genome.fa.s8955.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008955.1 Hibiscus syriacus cultivar Beakdansim tig00112285_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4658001

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  10  of  23  ( 2731 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1929068--1929125	23	2.7	21	72	5	53	25	12	24	37	1.90
1930850--1930875	8	3.2	8	100	0	52	15	0	11	73	1.11
1931549--1931594	22	2.2	22	84	7	60	39	4	2	54	1.32
1933301--1933408	36	3.0	36	100	0	216	27	19	16	36	1.93
1934531--1934593	31	2.0	31	87	0	90	53	1	0	44	1.10
1934715--1934774	11	5.5	11	74	18	54	66	3	1	28	1.17
1935566--1935603	13	2.9	13	100	0	76	0	31	23	44	1.54
1936009--1936043	3	11.3	3	93	6	61	62	0	0	37	0.95
1936532--1936592	31	2.0	31	86	0	86	55	1	0	42	1.09
1937554--1937578	13	1.9	13	100	0	50	0	32	24	44	1.54
1937964--1938004	2	22.0	2	80	14	52	51	0	0	48	1.00
1937990--1938066	3	25.3	3	97	2	145	64	0	0	35	0.93
1938552--1938612	31	2.0	31	86	0	86	55	1	0	42	1.09
1939585--1939622	13	2.9	13	100	0	76	0	31	23	44	1.54
1940032--1940073	3	13.7	3	90	5	66	66	0	0	33	0.92
1940191--1940400	76	2.8	76	94	0	366	35	21	20	23	1.96
1940332--1940445	45	2.5	45	95	2	201	33	21	21	23	1.97
1940342--1940411	20	3.0	25	61	26	62	34	18	21	25	1.96
1940379--1940521	76	1.9	74	97	2	268	34	20	21	22	1.96
1940453--1940608	45	3.4	45	98	1	294	33	20	23	22	1.97
1940332--1943550	166	20.0	166	81	9	2589	35	20	21	22	1.96
1940545--1940684	76	1.9	74	90	3	226	37	20	21	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1940619--1940780	45	3.6	45	89	2	218	37	20	20	20	1.94
1940711--1940928	76	2.9	76	94	2	379	35	21	20	22	1.96
1940860--1940973	45	2.5	45	89	2	174	33	20	21	24	1.97
1940981--1941094	45	2.5	45	97	2	210	33	21	22	22	1.97
1941028--1941170	76	1.9	74	97	2	268	34	20	21	22	1.96
1941102--1941257	45	3.4	45	98	1	294	33	20	23	22	1.97
1940191--1941215	121	8.5	118	82	8	832	35	20	21	22	1.96
1941149--1942222	121	8.9	119	79	10	834	35	20	21	22	1.96
1941194--1941333	76	1.9	74	90	3	226	37	20	21	20	1.95
1941268--1941430	45	3.6	45	88	1	218	37	20	20	21	1.95
1941360--1941653	76	3.9	76	95	1	522	35	21	19	23	1.96
1941360--1941653	151	2.0	150	95	2	527	35	21	19	23	1.96
1941585--1941698	45	2.5	45	89	2	174	33	20	21	24	1.97
1941706--1941865	45	3.5	45	98	1	302	33	20	23	23	1.97
1941798--1941941	76	1.9	74	91	2	234	34	20	20	25	1.97
1941872--1941985	45	2.5	45	89	2	174	33	20	21	24	1.97
1941993--1942105	44	2.5	45	94	5	201	33	21	23	22	1.97
1942113--1942267	45	3.4	45	98	1	292	33	20	23	22	1.97
1942204--1942343	76	1.9	74	90	3	226	37	20	21	20	1.95
1942278--1942440	45	3.6	45	88	1	218	37	20	20	21	1.95
1942370--1942663	76	3.9	76	95	1	522	35	21	19	23	1.96
1942370--1942663	151	2.0	150	95	2	527	35	21	19	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1942595--1942708	45	2.5	45	89	2	174	33	20	21	24	1.97
1942716--1942875	45	3.5	45	98	1	302	33	20	23	23	1.97
1942808--1942951	76	1.9	74	91	2	234	36	20	20	22	1.96
1942882--1943044	45	3.6	45	89	1	227	37	20	20	20	1.95
1942159--1942992	121	6.9	119	73	13	575	35	20	21	22	1.96
1942974--1943550	76	7.6	76	96	1	1025	35	20	20	23	1.96
1944214--1944255	22	1.9	22	85	0	57	38	14	11	35	1.83
1944220--1944274	22	2.5	22	84	0	74	36	14	12	36	1.84
1945743--1945808	35	1.9	34	90	3	105	34	22	9	33	1.86
1949025--1949078	1	54.0	1	84	0	72	0	7	0	92	0.38
1949025--1949089	7	8.2	8	83	16	75	1	9	0	89	0.56
1949025--1949089	17	3.9	17	87	2	87	1	9	0	89	0.56
1949383--1949423	2	20.5	2	100	0	82	51	0	0	48	1.00
1950399--1950436	12	3.2	12	81	3	51	28	2	2	65	1.19
1950450--1950477	2	14.0	2	100	0	56	50	0	0	50	1.00
1950571--1950631	31	2.0	31	86	0	86	42	0	1	55	1.09
1954367--1954425	29	2.0	29	100	0	118	49	13	13	23	1.78
1959054--1959112	29	2.0	29	100	0	118	49	13	13	23	1.78
1959532--1959571	18	2.2	18	86	8	55	70	0	2	27	1.01
1968895--1968940	23	2.0	23	95	0	83	32	21	17	28	1.96
1974588--1974726	65	2.1	66	94	2	253	26	10	17	45	1.81
1976887--1977066	89	2.0	92	89	3	276	28	26	25	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1979920--1979944	12	2.1	12	100	0	50	24	16	24	36	1.94
1981362--1981722	178	2.0	181	96	3	667	36	8	22	32	1.84
1984799--1984855	24	2.4	24	96	0	105	52	33	3	10	1.53
1990156--1990190	2	17.5	2	100	0	70	48	0	0	51	1.00
1996011--1996368	183	2.0	182	94	0	635	39	21	10	28	1.87
1998987--1999038	24	2.1	24	82	3	59	32	23	28	15	1.95
2002485--2002536	13	4.0	13	75	9	61	26	21	21	30	1.98
2002634--2002658	10	2.5	10	100	0	50	60	20	0	20	1.37
2006779--2006834	26	2.2	26	83	0	67	28	1	14	55	1.49
2006787--2006842	26	2.2	26	86	0	76	25	1	16	57	1.49
2017031--2017123	30	3.1	30	85	1	125	30	31	7	31	1.85
2017073--2017171	30	3.3	30	79	6	87	25	34	5	35	1.78
2024035--2024065	14	2.2	14	94	0	53	70	0	9	19	1.14
2040629--2040675	22	2.1	22	100	0	94	31	19	4	44	1.70
2042774--2042817	20	2.2	20	84	4	63	65	0	15	18	1.27
2052408--2052455	21	2.3	21	82	13	55	33	25	14	27	1.94
2052420--2052502	23	3.7	23	81	12	102	27	21	20	30	1.98
2059316--2059397	38	2.2	38	95	2	148	21	14	29	34	1.93
2069710--2069761	23	2.3	23	96	0	95	34	21	15	28	1.94
2071793--2071889	49	2.0	49	97	0	185	26	14	13	45	1.82
2093913--2093938	13	2.0	13	100	0	52	23	23	15	38	1.92
2096159--2096196	17	2.2	18	85	4	51	71	0	5	23	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2098533--2098644	2	56.0	2	100	0	224	0	0	50	50	1.00
2099154--2099237	23	3.7	23	93	0	105	17	21	25	35	1.95
2103461--2103488	2	14.0	2	100	0	56	50	0	0	50	1.00
2107770--2107939	20	8.5	20	86	3	182	35	25	17	20	1.95
2108601--2108647	24	2.0	24	87	8	69	25	14	21	38	1.92
2108822--2108846	12	2.1	12	100	0	50	72	0	28	0	0.86
2111182--2111279	19	5.4	19	84	13	143	14	22	17	45	1.84
2111163--2111279	53	2.2	53	98	1	227	13	23	17	44	1.85
2111338--2111499	33	4.7	33	74	16	150	45	17	22	14	1.84
2111338--2111505	19	9.6	19	75	18	168	44	17	22	14	1.86
2111338--2111505	52	3.2	52	95	0	300	44	17	22	14	1.86
2111512--2111611	19	5.5	19	83	12	138	15	22	17	46	1.84
2111495--2111611	53	2.2	53	93	1	200	14	23	17	44	1.85
2111718--2111754	14	2.6	14	91	0	65	45	21	0	32	1.52
2113737--2113793	14	3.7	14	77	20	60	45	22	21	10	1.82
2113718--2113810	33	2.8	33	95	0	168	47	21	20	10	1.80
2113681--2113815	19	7.6	19	76	16	128	45	23	19	11	1.82
2113811--2113939	19	7.3	19	75	17	125	8	17	28	45	1.77
2113811--2113902	33	2.8	33	93	3	150	7	18	28	45	1.76
2113983--2114361	93	4.1	93	97	1	726	45	18	12	22	1.83
2113983--2114361	184	2.0	185	97	1	724	45	18	12	22	1.83
2116068--2116157	14	5.7	14	74	23	81	42	23	25	8	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2116060--2116174	33	3.5	33	95	0	212	45	20	24	9	1.81
2116067--2116179	19	6.8	18	72	23	88	43	22	24	9	1.83
2116175--2116219	19	2.4	19	92	0	72	8	17	26	46	1.78
2116217--2116294	41	1.9	41	94	0	138	11	26	16	44	1.82
2116218--2116293	21	3.7	21	82	3	100	10	26	17	46	1.80
2116373--2116443	33	2.2	33	89	0	106	47	16	23	11	1.79
2116625--2116679	22	2.5	22	81	0	74	20	16	40	23	1.91
2116825--2117018	20	9.6	20	82	5	221	19	19	25	35	1.95
2116825--2117018	60	3.2	60	83	0	253	19	19	25	35	1.95
2116966--2117060	20	4.7	20	79	5	102	16	17	24	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23