genome.fa.s8955.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008955.1 Hibiscus syriacus cultivar Beakdansim tig00112285_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4658001

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  4  of  23  ( 2731 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535878--535904	2	13.5	2	100	0	54	51	0	0	48	1.00
535958--536000	18	2.5	17	85	7	61	67	2	4	25	1.22
536651--536693	17	2.5	17	92	0	68	27	20	23	27	1.99
537306--537731	106	4.0	106	89	0	627	22	18	23	35	1.96
538348--538419	37	1.9	37	85	0	99	40	12	20	26	1.88
538360--538474	37	3.1	36	77	7	97	43	14	19	22	1.87
538591--538667	36	2.1	38	85	4	104	37	14	23	24	1.92
540240--540296	18	3.1	19	75	10	73	0	14	7	78	0.94
540240--540302	16	3.8	16	78	17	74	0	14	7	77	0.97
540252--540289	11	3.7	10	83	16	51	0	13	7	78	0.94
543749--543808	11	5.5	11	78	4	59	76	3	8	11	1.12
543750--543818	33	2.1	34	91	8	115	72	2	11	13	1.23
544587--544663	40	2.0	40	85	10	106	57	7	5	29	1.49
545139--545174	18	2.1	18	89	5	56	66	2	5	25	1.27
547009--547066	25	2.2	27	87	6	84	22	32	32	12	1.91
547530--547568	21	1.9	20	84	5	51	10	0	20	69	1.17
553138--553691	199	2.8	198	81	4	596	40	12	11	35	1.80
554729--555101	179	2.1	178	81	2	435	35	13	12	38	1.83
554908--555461	200	2.8	199	79	5	616	35	12	12	39	1.82
557336--557970	318	2.0	314	96	4	1161	25	24	7	42	1.80
559805--559847	20	2.2	20	91	0	68	34	20	11	32	1.89
560216--560268	3	17.7	3	100	0	106	0	32	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564729--564771	20	2.2	20	86	0	59	37	20	9	32	1.85
564829--564877	22	2.2	22	100	0	98	36	32	6	24	1.80
566453--566492	21	1.9	21	100	0	80	35	10	7	47	1.65
576949--576991	21	2.0	21	91	8	70	67	4	6	20	1.33
580699--580730	5	6.8	5	92	7	50	81	0	0	18	0.70
582997--583350	177	2.0	177	100	0	708	35	14	21	28	1.93
592111--592171	28	2.1	28	81	3	68	24	8	8	59	1.54
594075--594119	21	2.1	21	87	0	63	15	24	35	24	1.94
595937--595968	5	6.8	5	92	7	50	21	0	0	78	0.76
596667--596724	29	1.9	31	82	6	75	48	0	0	51	1.00
597295--597329	5	7.0	5	87	12	54	60	0	0	40	0.97
601555--601601	20	2.2	21	85	11	60	34	0	0	65	0.93
601558--601609	20	2.6	21	80	14	56	38	0	0	61	0.96
603327--603393	30	2.2	30	94	0	116	43	14	17	23	1.87
607412--607546	56	2.3	57	81	11	159	11	12	17	58	1.63
612285--612379	31	3.1	31	80	3	111	34	21	17	26	1.95
613574--613714	64	2.2	63	80	7	151	26	19	17	36	1.94
618717--618783	30	2.2	30	94	0	116	43	14	17	23	1.87
621879--621908	16	1.9	15	93	6	51	36	0	0	63	0.95
622876--622917	16	2.6	16	92	0	75	40	7	28	23	1.81
624382--624419	20	1.9	20	100	0	76	28	28	5	36	1.79
626400--626431	16	1.9	17	93	6	57	40	21	0	37	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626894--626931	20	1.9	20	100	0	76	28	28	5	36	1.79
630576--630649	16	4.6	16	91	0	121	39	6	28	25	1.81
630576--630649	32	2.3	32	97	0	139	39	6	28	25	1.81
634905--634942	14	2.6	14	91	4	58	44	0	0	55	0.99
635072--635113	17	2.4	18	85	14	54	47	0	0	52	1.00
635087--635167	28	2.7	29	78	17	85	46	0	2	50	1.14
635206--635250	23	2.0	23	90	0	72	44	0	2	53	1.13
635207--635275	23	3.0	23	82	6	68	46	0	2	50	1.16
635392--635435	20	2.3	20	85	14	58	40	4	2	52	1.34
635424--635476	22	2.5	22	81	3	63	50	0	1	47	1.12
635871--635912	21	2.0	21	95	0	75	40	4	21	33	1.74
637313--637704	195	2.0	194	93	0	667	24	24	9	41	1.85
652568--652630	22	3.0	21	73	11	58	31	28	11	28	1.91
652739--652821	20	4.2	20	72	14	57	32	20	9	37	1.85
653143--653177	16	2.2	16	100	0	70	17	0	28	54	1.43
653608--653641	12	2.8	12	90	0	50	61	26	0	11	1.30
653762--653808	24	2.0	24	91	0	76	25	21	19	34	1.96
653767--653820	24	2.2	24	93	0	90	20	18	20	40	1.91
653999--654023	3	8.3	3	100	0	50	68	0	32	0	0.90
656478--656540	29	2.2	29	88	0	90	30	15	23	30	1.96
656555--656623	20	3.5	20	79	0	75	27	21	20	30	1.98
658125--658260	21	6.5	21	78	6	116	22	16	36	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
658146--658264	42	2.8	42	83	5	134	24	16	34	24	1.95
658555--658650	42	2.3	43	76	5	106	35	32	11	20	1.89
658592--658713	63	1.9	63	80	6	140	31	34	13	20	1.91
658667--658716	21	2.4	21	89	0	82	34	32	14	20	1.92
660227--660267	20	2.1	20	90	4	66	46	24	19	9	1.80
660820--660867	19	2.5	20	89	3	71	18	10	25	45	1.81
660855--660916	21	3.0	21	88	2	81	25	14	19	40	1.90
660858--660928	20	3.5	20	86	1	88	26	15	19	38	1.92
666126--666293	18	9.3	18	92	0	264	27	31	20	19	1.97
673090--673181	42	2.2	42	92	0	148	17	16	18	47	1.82
673470--673599	30	4.4	29	79	14	117	47	0	1	50	1.16
673505--673599	19	5.0	18	70	11	57	49	1	1	48	1.15
673594--673638	23	2.0	23	86	0	63	53	2	2	42	1.25
674306--675193	296	3.0	296	98	0	1697	39	13	10	36	1.80
675539--675606	3	22.7	3	100	0	136	0	33	0	66	0.92
676629--676666	17	2.2	17	100	0	76	50	28	0	21	1.49
678425--678458	18	1.9	18	88	5	52	20	5	23	50	1.70
688344--688540	107	1.8	105	94	4	349	15	19	12	51	1.75
701044--701076	2	16.5	2	100	0	66	51	0	0	48	1.00
704777--704816	21	1.9	21	84	0	53	55	20	15	10	1.68
720807--720964	83	1.9	83	96	0	289	45	12	1	40	1.50
726999--727032	3	11.0	3	87	6	50	61	0	2	35	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
727232--727289	23	2.5	23	81	8	64	32	24	29	13	1.94
727294--727358	22	3.0	20	76	8	51	44	18	9	27	1.80
737623--737687	23	2.8	23	69	0	58	38	16	24	20	1.93
738475--738532	21	2.8	21	86	0	89	27	25	22	24	2.00
741602--741684	3	27.7	3	95	0	148	33	2	0	63	1.07
741781--742116	169	2.0	167	95	3	604	25	29	25	20	1.99
743274--743313	12	3.1	13	82	10	55	40	0	0	60	0.97
747272--747304	16	2.1	16	88	5	50	30	21	3	45	1.67
754200--754260	17	3.6	17	86	0	77	85	0	14	0	0.60
754200--754260	24	2.5	24	86	0	77	85	0	14	0	0.60
755396--755945	83	6.6	83	97	0	1030	26	13	22	37	1.91
756661--757342	213	3.2	214	90	7	1053	35	16	19	28	1.93
757290--757394	53	2.0	53	88	3	158	25	22	13	38	1.91
757173--757507	166	2.0	166	98	0	643	33	17	18	29	1.94
757339--757576	112	2.1	113	90	2	381	37	15	19	27	1.92
757894--757964	3	23.7	3	94	0	124	33	2	0	63	1.09
759392--759431	12	3.1	13	82	10	55	40	0	0	60	0.97
763005--763048	23	1.9	23	85	0	61	29	25	27	18	1.98
768493--768536	23	1.9	23	85	0	61	29	25	27	18	1.98
774546--774588	22	2.0	22	85	0	59	41	20	6	30	1.79
775229--775296	35	1.9	35	85	5	93	20	25	19	35	1.96
775758--775795	17	2.1	19	85	14	53	15	18	7	57	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
776169--776214	22	2.1	22	87	0	65	30	6	10	52	1.62
794920--795079	80	2.0	80	98	0	311	41	12	23	22	1.87
796103--796203	21	4.8	21	75	1	85	39	20	13	25	1.90
796108--796203	42	2.3	42	79	0	102	40	19	14	25	1.90
803345--803404	21	2.8	21	79	5	66	31	30	18	20	1.96
806055--806080	2	13.0	2	100	0	52	50	0	0	50	1.00
806192--806232	10	4.1	10	90	0	64	70	9	0	19	1.14
806415--806791	55	7.0	55	85	4	412	29	24	18	28	1.98
806445--806797	106	3.3	106	86	1	463	28	24	17	28	1.97
806816--806925	37	3.0	37	84	5	134	24	18	18	39	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23