genome.fa.s8955.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008955.1 Hibiscus syriacus cultivar Beakdansim tig00112285_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4658001

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  23  of  23  ( 2731 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4498803--4498898	33	2.8	33	88	3	129	43	18	22	14	1.87
4498909--4498975	20	3.7	19	73	20	72	11	22	19	46	1.82
4498913--4499008	33	2.9	34	88	3	140	13	22	20	42	1.87
4498980--4499068	20	4.4	20	91	2	144	16	22	25	34	1.95
4500448--4500594	64	2.3	65	85	7	192	33	21	17	28	1.95
4501250--4501357	31	3.5	31	79	3	103	24	18	22	35	1.96
4501272--4501378	31	3.5	30	79	6	90	24	18	24	32	1.97
4502598--4502671	20	3.7	20	94	0	130	28	18	24	28	1.98
4502597--4502684	20	4.4	20	89	0	104	27	19	23	29	1.98
4502597--4502684	40	2.2	40	87	0	131	27	19	23	29	1.98
4502671--4502763	20	4.7	20	91	0	150	23	19	17	39	1.92
4502760--4502805	21	2.2	21	92	0	74	39	17	26	17	1.91
4508930--4508985	27	2.1	28	80	9	64	44	1	8	44	1.45
4511251--4511467	54	4.0	54	81	2	256	22	23	22	31	1.98
4518464--4518505	21	2.0	21	100	0	84	28	14	4	52	1.62
4520522--4520561	17	2.3	18	83	12	57	55	17	2	25	1.55
4520569--4520645	22	3.5	22	89	3	118	38	25	9	25	1.85
4522996--4523100	54	1.9	54	84	7	142	31	15	6	46	1.71
4526337--4526444	36	3.0	35	89	5	162	45	10	32	12	1.75
4530837--4530871	18	1.9	18	88	0	52	28	17	0	54	1.43
4532018--4532067	19	2.6	19	93	0	82	16	36	30	18	1.92
4532042--4532075	14	2.4	14	90	0	50	17	38	29	14	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4535817--4535851	18	1.9	18	88	0	52	28	17	0	54	1.43
4537002--4537084	19	4.6	19	82	14	113	18	36	28	16	1.93
4537026--4537091	14	4.4	14	80	17	78	19	36	28	15	1.92
4537008--4537091	33	2.5	33	96	0	150	20	35	28	15	1.93
4540839--4540872	17	2.0	17	88	0	50	26	17	0	55	1.42
4542023--4542105	19	4.6	19	82	14	113	18	36	28	16	1.93
4542047--4542112	14	4.4	14	80	17	78	19	36	28	15	1.92
4542029--4542112	33	2.5	33	96	0	150	20	35	28	15	1.93
4546348--4546388	21	2.0	21	90	0	64	43	17	26	12	1.84
4554447--4554477	15	2.1	15	93	0	53	54	0	0	45	0.99
4571783--4571875	7	12.4	7	76	18	82	79	0	19	1	0.79
4571796--4571872	5	15.8	5	82	15	67	80	0	19	0	0.71
4571788--4571875	13	7.0	12	80	17	83	79	0	19	1	0.79
4571783--4571872	17	5.1	18	81	15	100	80	0	18	1	0.78
4571783--4571875	37	2.4	38	81	16	113	79	0	19	1	0.79
4571783--4571867	4	22.0	4	74	21	67	80	0	18	1	0.79
4572227--4572275	19	2.8	17	81	9	55	36	10	6	46	1.63
4572566--4572898	113	3.0	114	91	3	532	33	15	20	30	1.93
4573657--4573826	69	2.4	70	83	3	216	35	14	17	31	1.90
4573595--4573936	182	1.9	180	88	2	515	37	14	18	29	1.90
4573919--4573983	20	3.3	20	64	12	53	43	9	20	27	1.82
4573739--4574102	112	3.2	109	80	10	396	38	11	18	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4574159--4574247	39	2.3	39	100	0	178	50	7	19	22	1.73
4574472--4574533	3	21.0	3	90	9	101	32	0	0	67	0.91
4589466--4589513	21	2.3	20	79	10	60	22	27	16	33	1.96
4589495--4589541	20	2.3	21	81	7	60	31	23	19	25	1.98
4589447--4589596	82	1.8	80	80	12	180	28	26	16	29	1.96
4590398--4590451	24	2.2	24	93	0	90	20	18	20	40	1.91
4592989--4593115	33	3.8	33	93	0	209	47	18	22	11	1.81
4593125--4593204	33	2.4	33	87	0	115	10	18	22	48	1.77
4593311--4593347	14	2.6	14	91	0	65	45	21	0	32	1.52
4594697--4594762	21	3.2	21	69	2	62	19	19	36	24	1.95
4594697--4594814	42	2.8	41	81	6	112	22	17	36	22	1.95
4595216--4595283	17	3.6	18	80	13	75	44	22	20	13	1.86
4595274--4595309	14	2.6	14	90	0	63	44	19	25	11	1.83
4595339--4595465	19	6.7	19	73	17	95	11	17	24	47	1.80
4595516--4595894	94	4.1	94	93	1	611	46	18	12	21	1.82
4597586--4597648	20	3.2	20	82	8	83	46	17	23	12	1.83
4597584--4597674	33	2.5	34	79	13	103	45	19	24	10	1.83
4597689--4597764	20	3.8	20	84	5	84	11	18	17	52	1.74
4598294--4598339	20	2.2	20	80	3	56	26	19	23	30	1.98
4599900--4599964	31	2.1	31	85	5	87	38	12	26	23	1.90
4602007--4602065	31	1.9	31	100	0	118	20	25	16	37	1.93
4602646--4602678	13	2.4	14	85	10	50	6	9	6	78	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4602715--4602751	18	2.0	19	94	5	67	37	10	2	48	1.52
4608028--4608171	72	2.0	72	95	0	261	21	22	22	33	1.97
4611601--4611661	23	2.7	23	89	0	95	26	27	26	19	1.99
4612677--4612721	21	2.1	21	87	0	63	15	24	28	31	1.96
4613678--4613721	24	1.9	22	86	9	61	72	0	4	22	1.02
4615365--4615402	19	2.1	19	85	5	51	60	7	0	31	1.25
4618748--4618813	31	2.1	31	94	0	114	30	7	10	51	1.64
4618969--4619055	2	43.5	2	100	0	174	50	0	0	49	1.00
4619051--4619198	31	5.0	30	71	19	89	45	2	0	52	1.12
4619051--4619198	32	5.0	30	71	19	107	45	2	0	52	1.12
4628612--4628652	20	2.1	20	86	13	59	46	4	7	41	1.53
4631136--4631230	30	3.2	30	75	8	104	61	4	14	20	1.50
4633163--4633241	40	2.0	40	87	0	113	29	20	30	20	1.97
4633267--4633483	43	4.8	44	73	9	159	23	18	30	26	1.98
4633317--4633526	47	4.5	46	71	12	158	25	17	30	27	1.97
4633205--4633616	141	2.9	141	94	1	684	24	18	29	27	1.98
4633250--4633561	47	6.7	46	68	15	140	25	17	30	26	1.97
4646338--4646431	30	3.2	30	73	10	95	60	4	14	20	1.51
4648179--4648221	3	14.0	3	85	4	59	65	2	2	30	1.18
4649428--4649469	16	2.6	16	88	0	57	28	0	2	69	1.01
4653937--4654102	75	2.2	75	80	3	181	31	16	19	32	1.94
4655433--4655509	22	3.5	22	96	0	145	33	11	14	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4656015--4656327	156	2.0	162	85	7	435	34	14	12	38	1.84
4656468--4656892	108	3.9	112	90	3	616	36	14	20	28	1.92
4657195--4657240	16	2.9	16	84	9	51	19	2	2	76	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23

The End!