genome.fa.s8955.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008955.1 Hibiscus syriacus cultivar Beakdansim tig00112285_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4658001

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   

This is table  22  of  23  ( 2731 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4342380--4342511	37	3.6	37	79	9	119	34	18	20	26	1.96
4342872--4343117	54	4.6	54	95	0	438	34	19	26	19	1.95
4342984--4343297	54	5.9	54	85	5	248	30	18	26	24	1.98
4343100--4343292	105	1.8	106	87	3	291	26	18	25	29	1.98
4343099--4343322	55	4.2	55	78	12	200	26	18	24	30	1.98
4352241--4352279	19	2.1	19	90	9	62	20	15	28	35	1.93
4352280--4352589	21	14.4	21	81	9	331	21	18	19	41	1.91
4352280--4352589	130	2.4	129	89	5	466	21	18	19	41	1.91
4352280--4352589	172	1.8	171	90	2	496	21	18	19	41	1.91
4352280--4352589	42	7.2	43	85	5	380	21	18	19	41	1.91
4352922--4353015	45	2.1	45	95	0	170	39	8	9	42	1.68
4353210--4353243	12	3.1	11	91	8	52	0	17	52	29	1.45
4353361--4353428	21	3.2	21	75	8	84	25	25	23	26	2.00
4353472--4353629	62	2.5	62	95	2	282	23	21	21	33	1.97
4353432--4353649	41	5.3	42	86	6	200	23	21	22	32	1.98
4353432--4353649	21	10.5	21	79	11	209	23	21	22	32	1.98
4353897--4353936	20	2.0	20	85	0	53	57	2	12	27	1.48
4353984--4354024	2	21.5	2	85	9	59	48	0	0	51	1.00
4356980--4357025	2	23.0	2	95	0	83	52	0	0	47	1.00
4357510--4357552	18	2.5	17	85	7	61	67	2	4	25	1.22
4357944--4358045	34	2.9	36	88	11	165	27	14	14	43	1.85
4358593--4359048	105	4.3	106	90	3	657	21	18	26	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4358593--4359048	211	2.1	212	87	2	666	21	18	26	33	1.97
4359977--4360030	22	2.5	22	93	3	92	22	12	25	38	1.90
4360646--4360690	12	3.6	12	85	8	54	0	13	6	80	0.91
4364777--4364878	34	2.9	36	88	11	165	27	14	14	43	1.85
4366612--4366686	6	12.2	6	91	5	96	29	49	16	5	1.67
4366614--4366640	14	1.9	14	100	0	54	33	51	14	0	1.43
4366684--4366732	5	9.8	5	93	0	62	16	36	40	6	1.73
4372226--4372275	21	2.3	22	79	6	57	40	26	8	26	1.83
4372553--4372607	6	9.2	6	95	0	92	30	49	16	3	1.63
4372605--4372652	5	9.8	5	88	4	53	16	35	41	6	1.74
4373359--4373398	14	3.1	13	82	10	55	60	0	0	40	0.97
4374804--4374866	3	21.0	3	90	0	99	65	0	1	33	1.03
4376275--4376367	21	4.6	20	78	4	96	38	18	24	18	1.92
4376272--4376367	41	2.3	41	98	0	183	39	17	23	18	1.92
4376275--4376367	20	4.6	20	78	4	96	38	18	24	18	1.92
4376294--4376428	41	3.3	41	81	6	123	37	20	21	20	1.94
4376356--4376449	20	4.7	20	80	2	89	34	24	18	23	1.96
4376966--4377032	19	3.5	19	83	2	80	49	23	16	10	1.77
4377028--4377097	19	3.7	19	94	0	122	11	20	21	47	1.81
4377028--4377135	38	3.0	38	81	9	118	12	23	21	43	1.85
4377080--4377167	33	2.8	32	88	10	119	14	25	20	39	1.90
4380645--4380680	14	2.6	14	95	0	63	30	0	25	44	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4381339--4381401	18	3.8	18	80	19	75	14	22	19	44	1.86
4381357--4381403	18	2.6	19	90	10	80	14	21	17	46	1.83
4381519--4381554	13	2.7	13	86	4	54	50	22	0	27	1.50
4381967--4382017	14	3.2	16	73	26	54	11	23	19	45	1.83
4381967--4382043	32	2.4	32	88	2	109	12	23	22	41	1.88
4383992--4384113	19	6.6	19	77	11	101	41	23	20	13	1.88
4384120--4384228	32	3.4	32	94	1	193	9	20	24	45	1.80
4384125--4384212	14	5.8	14	72	20	70	7	19	26	46	1.77
4384213--4384267	20	2.8	19	83	8	65	16	23	23	36	1.94
4384720--4384764	18	2.5	18	85	0	63	15	15	42	26	1.87
4385696--4385748	28	1.9	27	96	3	97	66	11	3	18	1.38
4386363--4386457	20	4.7	20	77	2	82	23	16	24	35	1.95
4386446--4386540	21	4.6	21	82	3	122	16	25	18	38	1.92
4386465--4386560	39	2.4	41	92	3	160	18	22	18	39	1.92
4390281--4390363	2	42.5	2	95	4	152	50	0	0	49	1.00
4390997--4391037	14	2.9	14	96	0	73	36	17	12	34	1.87
4390977--4391014	20	1.9	20	88	0	58	39	13	15	31	1.86
4391140--4391236	35	2.8	33	89	7	142	21	21	23	32	1.98
4391150--4391249	35	3.0	31	88	10	137	20	24	22	34	1.97
4392899--4392939	14	2.9	14	92	0	64	36	14	12	36	1.84
4393988--4394051	2	32.0	2	96	0	119	48	0	1	50	1.10
4395312--4395537	20	11.3	19	79	11	181	41	23	16	18	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4395287--4395537	120	2.1	120	88	4	382	41	23	15	18	1.89
4396081--4396123	14	3.1	14	80	6	52	44	27	18	9	1.80
4397831--4397878	15	3.2	15	96	0	87	14	22	33	29	1.94
4401811--4401851	17	2.4	17	100	0	82	48	0	21	29	1.50
4404519--4404554	12	3.0	12	87	0	54	30	8	25	36	1.85
4404699--4404746	15	3.2	15	96	0	87	14	22	33	29	1.94
4406845--4407053	75	2.8	74	84	5	242	23	32	22	21	1.98
4414825--4414866	17	2.7	15	82	13	57	14	0	28	57	1.38
4414829--4414862	17	2.0	17	94	0	59	11	0	32	55	1.36
4415453--4415658	75	2.7	76	84	3	256	23	30	23	21	1.99
4421875--4422097	105	2.1	104	84	0	284	22	15	21	39	1.91
4422114--4422163	24	2.1	24	96	0	91	24	26	28	22	1.99
4422114--4422176	24	2.6	24	87	5	74	25	25	25	23	2.00
4422967--4423034	34	2.0	34	94	0	118	27	7	27	36	1.84
4427609--4427642	16	2.2	16	89	5	52	55	5	5	32	1.48
4429959--4430004	21	2.2	21	88	0	65	39	19	10	30	1.86
4429924--4430569	90	7.3	88	75	7	502	28	19	18	33	1.96
4430105--4430425	87	3.7	86	75	5	295	27	19	21	31	1.97
4430052--4430517	177	2.6	176	86	2	587	28	20	19	32	1.97
4430408--4430448	21	2.0	21	85	0	55	39	21	9	29	1.86
4432298--4432348	24	2.1	24	82	7	59	31	7	3	56	1.46
4434084--4434111	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4434760--4434797	15	2.5	15	95	0	67	28	5	52	13	1.61
4442464--4442577	60	1.9	60	81	0	138	35	15	14	33	1.89
4443791--4443852	27	2.3	27	77	0	70	43	0	4	51	1.23
4444676--4444722	18	2.8	17	83	6	60	31	34	12	21	1.91
4444668--4444721	18	3.2	16	75	12	54	29	37	11	22	1.89
4454144--4454183	18	2.3	17	82	4	53	60	0	0	40	0.97
4454477--4454506	3	10.0	3	92	0	51	63	0	3	33	1.11
4455996--4456050	3	18.0	3	84	3	74	63	1	0	34	1.05
4457895--4457924	10	3.0	10	100	0	60	70	0	0	30	0.88
4458299--4458330	15	2.1	15	94	0	55	53	0	0	46	1.00
4459352--4459389	13	3.1	12	82	17	51	73	0	2	23	0.95
4460479--4460530	2	26.0	2	100	0	104	50	0	0	50	1.00
4468017--4468053	3	12.7	3	94	5	67	29	0	0	70	0.88
4472509--4472568	25	2.4	25	91	0	102	30	16	13	40	1.87
4475092--4475144	21	2.5	21	90	9	90	37	0	9	52	1.34
4478476--4478526	26	2.0	26	96	0	93	37	3	13	45	1.63
4479076--4479164	44	2.0	45	85	10	121	24	26	21	26	1.99
4479985--4480027	4	10.8	4	100	0	86	48	0	0	51	1.00
4481844--4481881	2	19.0	2	100	0	76	50	0	0	50	1.00
4483973--4484032	29	2.0	31	90	6	97	35	6	16	41	1.75
4484098--4484163	19	3.5	19	93	0	105	40	10	12	36	1.77
4490404--4490443	21	1.9	21	85	10	55	35	7	2	55	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4492389--4492543	62	2.5	61	77	12	165	27	18	23	30	1.97
4493687--4493839	20	7.7	20	92	0	252	39	18	18	22	1.92
4493687--4493857	60	2.8	60	91	1	272	38	19	19	22	1.93
4494036--4494101	22	3.0	22	88	4	98	25	39	13	21	1.90
4494438--4494507	20	3.5	20	84	1	97	12	15	21	50	1.78
4496382--4496538	33	4.5	33	74	11	143	42	20	19	17	1.89
4496449--4496514	20	3.3	20	91	2	98	36	22	19	21	1.95
4496561--4496687	20	6.3	20	94	0	173	21	18	22	37	1.94
4497220--4497278	21	2.8	21	71	5	57	22	38	20	18	1.93
4498662--4498697	14	2.6	14	90	0	54	30	0	22	47	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23