genome.fa.s9582.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009582.1 Hibiscus syriacus cultivar Beakdansim tig00116959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4978262

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  13  of  24  ( 2799 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2623809--2623840	15	2.1	15	100	0	64	50	6	18	25	1.70
2628197--2628239	12	3.4	12	87	6	50	58	0	2	39	1.11
2628206--2628247	14	3.1	14	90	6	61	54	0	4	40	1.21
2628833--2628938	3	36.0	3	85	11	148	66	1	0	32	1.03
2629101--2629153	24	2.2	25	83	10	65	73	1	3	20	1.08
2629316--2629484	29	6.0	26	67	19	90	34	10	4	49	1.58
2629316--2629484	84	2.0	84	100	0	338	34	10	4	49	1.58
2631836--2631883	20	2.4	20	92	0	78	58	4	0	37	1.18
2632576--2632629	20	2.6	21	80	11	67	33	24	20	22	1.97
2632639--2632740	19	5.1	19	79	13	105	32	5	28	33	1.81
2633150--2633400	21	12.6	21	71	10	141	33	24	19	21	1.97
2633187--2633351	61	2.8	58	82	7	199	35	21	19	23	1.96
2633243--2633322	40	2.0	40	87	0	115	35	22	20	22	1.96
2633253--2633435	61	3.1	61	89	5	254	32	26	20	20	1.97
2642296--2642871	206	2.6	211	85	10	734	23	12	26	37	1.90
2642829--2642900	38	1.9	38	94	2	128	15	11	33	40	1.82
2643431--2643494	18	3.7	18	93	4	105	28	31	6	34	1.82
2643894--2643936	16	3.0	15	83	16	56	62	0	0	37	0.95
2643912--2643955	23	1.9	23	90	0	70	56	0	2	40	1.11
2645000--2645079	11	7.7	10	71	17	56	52	3	0	43	1.19
2644993--2645079	31	2.8	30	83	10	104	54	3	0	42	1.17
2644997--2645046	19	2.5	21	84	9	70	56	2	0	42	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2647228--2647295	3	22.7	3	88	5	102	63	0	32	4	1.14
2653975--2654001	4	6.8	4	100	0	54	25	0	0	74	0.83
2654805--2654955	15	10.0	15	91	1	248	51	0	0	48	1.00
2654805--2655019	30	7.0	30	85	9	265	47	0	2	49	1.16
2654805--2654997	45	4.2	45	89	6	264	49	0	1	49	1.10
2654962--2654996	14	2.5	14	95	0	61	42	0	0	57	0.99
2654976--2655086	50	2.1	52	93	6	190	36	0	10	53	1.36
2655031--2655415	80	4.7	81	77	13	335	34	0	12	52	1.42
2655102--2655240	47	2.9	47	87	7	206	35	0	12	51	1.44
2655201--2655401	32	6.5	32	74	19	194	32	0	13	53	1.40
2655094--2655367	99	2.8	99	78	14	229	33	0	13	52	1.43
2655304--2655494	83	2.2	83	85	9	238	33	0	14	52	1.42
2655382--2655462	22	4.0	22	70	16	84	33	0	17	49	1.47
2655352--2655637	90	3.3	89	82	13	312	32	0	13	53	1.41
2655451--2655504	14	3.6	14	72	18	54	33	0	7	59	1.25
2655442--2655530	36	2.6	34	92	7	146	31	0	12	56	1.37
2655343--2655526	18	10.4	18	66	23	90	30	0	14	54	1.41
2655442--2655610	32	4.6	36	77	20	156	31	0	13	54	1.40
2655497--2655574	22	3.4	22	69	19	68	26	0	16	56	1.41
2655499--2655573	26	3.1	24	75	13	82	26	0	17	56	1.42
2655471--2655627	80	1.9	82	92	5	264	31	0	14	54	1.40
2655657--2655715	31	1.9	31	92	0	100	42	10	6	40	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2663832--2663884	15	3.5	15	89	0	70	11	67	13	7	1.40
2664317--2664369	15	3.5	15	89	0	70	11	67	13	7	1.40
2666853--2666907	15	3.5	15	79	20	51	47	5	0	47	1.25
2668616--2668921	148	2.0	151	90	5	478	53	13	14	18	1.72
2670710--2670891	79	2.3	80	81	10	221	28	17	17	37	1.92
2671533--2671619	37	2.4	37	82	3	95	43	14	16	25	1.86
2672485--2672977	54	9.0	54	83	7	494	41	18	10	29	1.84
2672485--2672984	159	3.0	160	83	8	526	41	18	10	29	1.84
2672485--2672984	273	1.8	269	82	7	641	41	18	10	29	1.84
2675058--2675170	10	11.7	9	67	15	57	2	16	4	76	1.07
2675063--2675186	20	6.2	21	74	14	93	4	16	4	75	1.12
2675058--2675190	9	13.9	9	67	22	58	3	18	3	74	1.12
2680642--2680689	3	16.0	3	95	0	87	64	0	2	33	1.05
2688156--2688190	17	2.1	17	100	0	70	28	17	11	42	1.83
2690053--2690124	21	3.7	20	70	24	64	29	12	29	29	1.93
2690090--2690130	21	1.9	22	95	5	75	26	12	31	29	1.92
2694164--2694270	46	2.3	46	86	0	160	37	12	21	28	1.89
2694194--2694752	241	2.3	240	89	0	839	35	12	17	34	1.87
2696198--2696270	30	2.4	30	97	0	137	31	24	19	24	1.98
2696198--2696297	30	3.3	30	88	1	110	33	25	19	23	1.97
2696275--2696351	31	2.5	31	86	0	109	35	19	15	29	1.93
2699928--2699997	30	2.3	30	85	2	86	35	25	15	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2699956--2700051	31	3.1	31	81	0	93	36	20	13	29	1.91
2709387--2709659	136	2.0	136	100	0	546	32	24	16	26	1.96
2715474--2715802	77	4.2	77	82	4	408	34	10	20	34	1.86
2715663--2715791	40	3.3	40	69	6	120	34	7	21	36	1.82
2715643--2715762	37	3.2	37	67	6	96	34	9	22	34	1.86
2715464--2715801	158	2.2	154	83	5	410	36	10	20	33	1.86
2715680--2715805	40	3.2	40	69	10	116	35	7	19	36	1.81
2715800--2715891	39	2.4	38	87	5	125	35	15	7	41	1.75
2716138--2716178	17	2.4	17	88	8	57	48	14	12	24	1.78
2717257--2717370	35	3.3	35	88	0	165	42	21	0	34	1.59
2717364--2717438	35	2.1	35	90	4	116	34	1	18	45	1.58
2717415--2717486	24	3.0	24	67	28	62	37	5	12	44	1.66
2717878--2717926	2	24.5	2	100	0	98	48	0	0	51	1.00
2720775--2720807	11	3.1	11	86	8	50	36	3	0	60	1.12
2720813--2720860	21	2.3	21	77	0	51	58	2	0	39	1.10
2724925--2725766	182	4.6	182	91	1	1168	43	13	14	28	1.84
2725837--2725893	21	2.7	21	94	0	96	43	21	12	22	1.85
2728105--2728240	66	2.1	66	84	2	175	32	2	41	24	1.67
2733426--2733464	20	2.0	20	89	0	60	43	5	15	35	1.69
2733427--2733470	20	2.2	20	83	0	52	47	4	13	34	1.63
2732930--2733729	199	4.1	198	86	4	1073	39	13	15	31	1.86
2732930--2733655	392	1.9	391	89	3	1138	39	14	15	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2736514--2736565	24	2.2	24	89	6	79	32	1	15	50	1.55
2736525--2736576	24	2.2	24	82	0	59	34	3	15	46	1.64
2738044--2738980	199	4.7	198	88	1	1311	40	13	14	31	1.85
2738052--2738980	397	2.3	398	88	1	1380	40	13	14	31	1.85
2740436--2740468	17	1.9	17	100	0	66	54	0	0	45	0.99
2740433--2740487	28	2.0	27	85	3	74	56	0	0	43	0.99
2740437--2740474	17	2.2	17	90	0	58	57	0	0	42	0.98
2745196--2745348	75	2.0	75	87	6	220	32	15	15	37	1.89
2746741--2746791	20	2.5	20	90	0	84	43	17	11	27	1.84
2749815--2749878	32	2.0	32	93	0	110	29	12	20	37	1.89
2750908--2751107	99	2.0	99	98	0	382	37	25	11	26	1.89
2752866--2752915	21	2.3	23	80	16	61	40	8	6	46	1.58
2767564--2767602	21	1.9	20	84	5	51	35	10	15	38	1.81
2774826--2774877	23	2.3	23	100	0	104	51	13	26	7	1.67
2784078--2784197	57	2.1	57	98	0	231	28	10	22	38	1.88
2787397--2787640	23	10.0	22	67	22	107	34	0	13	51	1.42
2787398--2787589	76	2.5	75	92	3	312	32	0	15	52	1.43
2787731--2787789	21	2.8	21	92	7	102	37	0	15	47	1.45
2787701--2787929	107	2.2	108	86	7	328	34	0	13	51	1.42
2787776--2787929	32	4.5	32	74	19	141	33	0	12	53	1.39
2787776--2787859	31	2.7	32	89	5	111	33	0	10	55	1.34
2787799--2787943	75	1.9	76	94	1	256	31	0	15	53	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2787580--2787958	149	2.5	149	80	15	389	34	0	12	52	1.40
2787907--2787950	21	2.1	21	95	0	79	36	0	13	50	1.42
2787973--2788031	31	1.9	31	92	0	100	42	8	8	40	1.66
2787933--2788276	171	2.0	172	99	0	681	37	8	11	43	1.70
2788144--2788202	31	1.9	31	92	0	100	42	8	8	40	1.66
2792196--2792295	18	5.6	18	77	2	94	48	12	8	32	1.69
2794431--2794483	23	2.3	23	81	15	56	62	0	3	33	1.13
2802283--2802423	36	3.9	36	88	3	221	36	19	24	18	1.94
2802278--2802423	72	2.0	72	97	0	274	38	19	24	17	1.93
2802603--2802647	20	2.2	20	88	0	72	24	0	28	46	1.53

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24