Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009582.1 Hibiscus syriacus cultivar Beakdansim tig00116959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4978262

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  24  of  24  ( 2799 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4878039--4878080
13
3.0
14
79
10
50
66
16
7
9
1.42
4878039--4878080
15
3.0
15
76
16
54
66
16
7
9
1.42
4880130--4880170
2
20.5
2
100
0
82
51
0
0
48
1.00
4880128--4880445
149
2.2
145
79
9
367
50
6
4
38
1.50
4880438--4880607
91
1.9
91
97
0
322
65
5
2
25
1.28
4881932--4881973
3
14.0
3
80
9
50
64
0
4
30
1.14
4881932--4881973
18
2.3
18
92
8
68
64
0
4
30
1.14
4890231--4890269
17
2.2
18
86
4
53
25
15
23
35
1.94
4890231--4890277
18
2.7
17
86
3
58
25
14
23
36
1.93
4900130--4900217
43
2.0
43
88
0
131
38
23
13
23
1.91
4901410--4901448
21
1.9
20
89
5
60
35
23
15
25
1.94
4912502--4912605
31
3.4
30
78
12
104
33
10
27
27
1.90
4913918--4913966
24
2.0
24
100
0
98
42
12
12
32
1.79
4914509--4914572
31
2.1
29
85
5
83
35
17
9
37
1.82
4921371--4921448
41
1.9
41
89
0
120
23
6
39
30
1.79
4922324--4922363
2
20.5
2
94
5
73
47
0
0
52
1.00
4924200--4924261
31
2.0
31
81
12
74
16
14
33
35
1.89
4924270--4924407
46
3.0
46
82
1
152
23
14
20
42
1.89
4924714--4924739
5
5.2
5
100
0
52
38
0
0
61
0.96
4925153--4925189
14
2.6
15
83
12
51
27
5
35
32
1.79
4925266--4925308
19
2.2
19
83
4
50
67
4
2
25
1.22
4925965--4926195
125
1.8
125
84
7
317
25
19
24
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4927316--4927340
2
12.5
2
100
0
50
48
0
0
52
1.00
4927811--4927847
19
2.0
19
89
5
58
51
5
5
37
1.48
4928964--4929036
19
3.8
19
94
3
128
42
17
10
28
1.83
4932827--4932870
21
2.1
21
86
0
61
6
43
15
34
1.74
4932863--4932888
3
8.7
3
100
0
52
0
65
0
34
0.93
4933571--4933607
18
2.0
19
94
5
67
43
0
18
37
1.51
4934001--4934159
63
2.5
64
85
8
209
31
24
18
25
1.98
4934001--4934159
64
2.5
64
85
7
209
31
24
18
25
1.98
4934131--4934179
19
2.6
19
84
9
57
24
28
20
26
1.99
4934001--4934179
64
2.8
62
79
13
186
30
25
18
25
1.98
4936544--4936573
2
15.0
2
100
0
60
50
0
0
50
1.00
4937202--4937264
29
2.1
29
85
8
83
20
11
17
50
1.76
4948013--4948046
17
1.9
18
88
5
52
38
11
8
41
1.73
4957973--4958043
3
23.7
3
77
5
72
38
1
0
60
1.06
4957962--4958043
15
5.7
15
77
8
80
36
1
0
62
1.03
4959353--4959400
24
1.9
26
83
8
64
31
2
4
62
1.26
4959388--4959464
27
2.9
27
73
7
84
29
1
2
66
1.13

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24

The End!