genome.fa.s9582.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009582.1 Hibiscus syriacus cultivar Beakdansim tig00116959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4978262

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  2  of  24  ( 2799 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350008--350211	85	2.4	85	86	5	272	23	19	33	23	1.97
350291--350348	30	2.0	29	90	10	91	44	17	5	32	1.70
350291--350350	29	2.0	30	93	6	104	43	16	6	33	1.74
350788--350844	27	2.1	27	80	6	62	49	15	14	21	1.80
355801--355919	32	3.7	32	75	0	112	30	23	14	31	1.94
356194--356311	32	3.7	32	77	0	119	32	20	13	33	1.91
355653--356410	393	1.9	392	91	0	1239	28	21	15	34	1.94
359345--359380	13	2.6	14	86	8	56	47	0	2	50	1.15
359354--359402	21	2.4	19	78	15	53	48	2	8	40	1.44
359842--359881	2	20.0	2	100	0	80	50	0	0	50	1.00
361192--361230	2	20.5	2	84	10	55	51	0	0	48	1.00
361177--361230	20	2.8	19	83	10	58	51	0	0	48	1.00
361770--361847	22	3.5	22	70	16	70	37	6	0	56	1.25
361767--361847	23	3.5	24	68	21	75	37	6	0	56	1.24
361771--361836	20	3.0	21	71	16	71	37	7	0	54	1.29
363558--363779	77	2.9	76	85	2	302	35	9	18	36	1.84
363718--364329	184	3.3	184	91	1	906	40	9	16	34	1.80
364078--364920	260	3.2	261	79	5	932	39	9	16	34	1.80
365153--365541	76	5.1	76	80	9	411	37	18	7	35	1.80
365421--365541	37	3.2	37	64	15	95	34	18	10	36	1.85
365159--365541	153	2.5	151	81	7	454	37	18	8	36	1.80
365425--365666	125	2.0	123	85	4	335	33	15	11	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
365548--365744	77	2.5	76	87	7	270	32	14	12	40	1.83
365579--365700	40	3.1	40	64	15	101	39	15	8	36	1.77
367184--367225	19	2.0	22	86	13	63	64	0	11	23	1.27
368175--368502	35	9.3	35	75	12	264	45	2	7	43	1.47
368185--368383	97	2.1	97	81	5	233	42	2	9	45	1.49
368278--368479	71	2.7	71	84	9	244	46	2	7	43	1.45
368873--368908	18	2.0	18	88	0	54	36	33	11	19	1.87
372857--372908	25	2.1	25	92	0	86	11	30	21	36	1.89
377930--377961	15	2.0	17	88	11	50	34	43	9	12	1.75
382855--382887	15	2.3	15	89	5	50	9	21	3	66	1.33
388594--388623	15	2.0	15	93	0	51	16	13	16	53	1.73
391886--391933	24	2.0	24	88	4	71	47	12	25	14	1.79
393439--393497	31	1.9	31	89	6	93	44	15	3	37	1.63
405810--405982	31	5.6	31	95	0	265	39	22	18	19	1.93
405810--405982	62	2.8	62	93	0	301	39	22	18	19	1.93
410027--410182	31	5.0	31	93	1	251	38	23	17	20	1.93
420523--420552	15	2.0	15	100	0	60	13	46	26	13	1.80
441635--441926	38	7.6	37	81	11	252	43	2	4	48	1.37
441700--441724	11	2.3	11	100	0	50	40	8	8	44	1.63
441634--441941	79	4.0	75	80	12	268	44	2	4	48	1.37
441635--441926	37	7.6	37	82	10	261	43	2	4	48	1.37
441962--441996	3	11.7	3	88	11	54	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446794--446879	31	2.7	31	75	10	77	60	2	0	37	1.10
448338--448492	65	2.4	65	96	0	283	19	21	23	36	1.95
450745--450785	16	2.6	16	100	0	82	19	26	31	21	1.97
450738--450790	16	2.8	20	72	27	60	18	28	32	20	1.97
450854--450933	31	2.6	31	97	0	151	43	22	15	18	1.87
450957--451058	11	8.9	11	70	17	57	28	21	18	31	1.97
450963--451047	23	3.7	23	83	0	116	27	21	18	32	1.97
452681--452740	23	2.7	23	79	7	61	53	3	1	41	1.27
455076--456404	249	5.3	249	80	8	1439	30	25	20	23	1.98
455076--456344	165	7.6	163	76	10	941	30	25	20	24	1.98
455723--455916	95	2.0	95	95	4	352	32	27	20	19	1.97
455076--456344	84	15.2	84	76	9	886	30	25	20	24	1.98
457069--457093	11	2.3	11	100	0	50	40	8	8	44	1.63
457125--457269	34	4.2	35	86	7	199	42	0	6	50	1.32
457284--457325	22	1.9	22	85	9	59	23	2	0	73	0.94
461158--461537	188	2.0	186	95	4	634	40	13	9	36	1.78
462933--462993	28	2.2	28	100	0	122	9	36	54	0	1.34
463513--463594	32	2.6	32	84	0	101	29	14	9	46	1.77
464960--465001	21	2.0	21	90	0	66	35	23	21	19	1.96
466045--466100	6	9.3	6	100	0	112	50	0	50	0	1.00
466672--466706	19	1.9	18	88	11	54	31	0	8	60	1.27
469147--469215	22	3.2	20	73	13	66	57	17	0	24	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482356--482416	31	1.9	33	90	6	99	31	0	22	45	1.53
487821--487908	29	3.0	29	78	3	104	44	9	4	42	1.56
487813--487938	30	4.3	29	72	11	89	42	8	4	43	1.56
487824--487938	59	1.9	59	89	0	176	42	8	5	43	1.58
487825--487934	30	3.7	29	76	4	96	41	8	5	44	1.57
488131--488171	2	20.5	2	100	0	82	51	0	0	48	1.00
493639--493674	18	2.0	18	88	0	54	25	2	0	72	0.98
494954--494993	14	2.9	14	81	3	55	22	0	2	75	0.93
495006--495035	2	15.0	2	100	0	60	50	0	0	50	1.00
495279--495321	18	2.5	17	82	14	52	44	0	2	53	1.13
496884--497101	105	2.1	105	98	0	420	34	16	18	30	1.93
499861--499899	16	2.4	16	100	0	78	35	38	5	20	1.75
500271--500330	29	2.1	29	96	3	113	25	21	20	33	1.97
505630--505743	56	2.0	57	98	1	221	28	19	20	32	1.97
507079--507776	124	5.7	123	90	1	1008	39	16	19	25	1.91
507896--507952	3	19.0	3	96	0	105	33	1	0	64	1.04
508754--508899	27	5.5	27	92	3	242	23	20	19	36	1.95
509272--509346	26	2.9	24	74	18	69	36	8	0	56	1.29
509377--509435	2	30.0	2	96	3	111	50	0	0	49	1.00
510811--510960	76	1.9	77	92	7	252	34	14	20	30	1.93
512231--512281	26	2.0	26	100	0	102	15	11	31	41	1.83
513416--513442	11	2.5	11	100	0	54	59	0	0	40	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515777--515861	23	3.7	23	82	3	100	28	24	23	23	2.00
515777--515867	11	7.9	11	74	15	69	27	25	23	24	2.00
515798--515862	34	1.9	34	90	6	105	30	23	23	23	1.99
522118--522244	63	2.0	63	96	3	238	29	9	17	44	1.80
523299--523338	21	1.9	21	89	0	62	25	40	25	10	1.86
529360--529680	162	2.0	163	99	0	635	34	18	13	33	1.90
531497--531537	14	2.9	14	100	0	82	36	14	12	36	1.84
532068--532149	28	2.9	28	96	0	146	36	13	32	17	1.88
532618--532679	32	1.9	32	100	0	124	29	19	22	29	1.98
536989--537051	32	2.0	32	100	0	126	25	22	22	30	1.99
540492--540995	53	9.6	54	88	6	468	29	25	15	28	1.96
540631--541003	51	7.2	51	91	3	386	28	27	16	27	1.97
542089--542207	8	13.4	8	67	21	51	6	18	0	73	1.09
542089--542140	24	2.1	26	89	7	81	7	19	0	73	1.07
542164--542210	19	2.5	19	82	3	60	6	17	0	76	0.98
549363--549418	18	3.1	19	71	7	53	58	8	10	21	1.58
551840--551937	44	2.1	46	88	7	146	39	21	11	27	1.87
558549--558577	14	2.1	14	93	6	51	58	0	0	41	0.98
573317--573420	54	1.9	54	96	0	190	38	4	6	50	1.50
574551--574611	16	3.8	16	82	6	70	59	21	11	8	1.58
577170--577219	25	2.0	25	88	0	73	32	20	26	22	1.98
580690--580759	31	2.4	30	80	7	81	35	5	10	48	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581782--581815	17	2.0	18	88	11	54	38	2	5	52	1.41
590159--590210	27	1.9	27	84	0	68	23	9	30	36	1.87
595759--595788	14	2.1	15	93	6	53	26	6	6	60	1.47
604979--605028	20	2.5	20	93	0	82	42	18	14	26	1.87
613329--613401	21	3.4	21	68	26	62	30	24	23	21	1.99
613315--613401	44	2.0	44	90	0	138	29	24	22	22	1.99
613684--613711	14	2.0	14	100	0	56	42	21	0	35	1.53
617870--617898	12	2.4	12	100	0	58	34	10	27	27	1.89
627190--627264	31	2.5	31	86	2	107	28	12	14	45	1.80
633147--633233	35	2.5	34	80	12	97	54	10	8	27	1.62

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24