genome.fa.s9582.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009582.1 Hibiscus syriacus cultivar Beakdansim tig00116959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4978262

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  8  of  24  ( 2799 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1582900--1583390	258	1.9	257	89	1	759	24	21	20	33	1.97
1583248--1583455	76	2.8	76	89	2	314	26	18	21	33	1.96
1584412--1584456	21	2.1	21	84	8	56	35	0	2	62	1.08
1587244--1587325	29	2.8	29	94	1	137	32	14	9	42	1.79
1591980--1592060	28	2.8	29	92	3	128	33	14	9	41	1.79
1595784--1595841	2	30.0	2	76	13	59	48	1	0	50	1.11
1595918--1596164	127	2.0	124	89	6	378	36	7	8	47	1.62
1607941--1608141	52	3.8	52	82	3	197	35	13	21	28	1.92
1607962--1608141	54	3.4	54	84	1	220	35	12	22	29	1.91
1608516--1608570	22	2.5	22	96	0	101	32	16	12	38	1.86
1609249--1609459	45	4.7	45	90	0	278	26	22	18	33	1.96
1609478--1609808	45	7.3	45	87	4	477	24	22	20	32	1.97
1609311--1609930	167	3.6	166	83	8	765	25	21	19	33	1.97
1609480--1609930	183	2.6	182	84	7	578	25	22	19	32	1.97
1609827--1609930	45	2.3	45	89	0	154	28	23	18	29	1.97
1609706--1610003	121	2.5	121	91	1	456	26	20	20	32	1.97
1610253--1610340	3	28.7	3	90	4	140	35	1	0	63	1.02
1611544--1611588	21	2.1	21	84	8	56	35	0	2	62	1.08
1623227--1623275	3	15.7	3	87	8	71	34	2	0	63	1.06
1623231--1623275	13	3.6	12	88	8	54	35	2	0	62	1.08
1623227--1623275	19	2.6	19	93	0	80	34	2	0	63	1.06
1623227--1623275	16	3.0	17	88	5	75	34	2	0	63	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1624869--1625115	128	1.9	128	94	0	440	36	7	7	48	1.59
1634587--1634788	45	4.5	45	91	0	269	25	22	18	33	1.97
1634807--1634955	45	3.3	45	90	0	217	26	22	18	32	1.97
1634685--1634910	122	1.9	122	87	0	335	26	22	17	33	1.96
1634642--1635121	167	2.9	167	92	0	773	25	22	18	33	1.97
1634587--1635333	212	3.5	209	78	7	722	25	22	19	32	1.97
1634974--1635211	45	5.3	45	91	0	377	23	23	19	33	1.97
1634974--1635044	25	3.0	25	60	19	62	18	22	21	38	1.94
1634807--1635333	257	2.1	256	89	0	802	25	22	19	32	1.97
1635230--1635333	45	2.3	45	89	0	154	28	23	18	29	1.97
1635109--1635406	121	2.5	121	89	1	438	26	21	20	32	1.97
1635657--1635726	3	22.7	3	94	5	122	34	0	0	65	0.93
1636930--1636974	21	2.1	21	84	8	56	35	0	2	62	1.08
1641732--1641787	20	2.8	20	97	0	103	28	14	19	37	1.91
1645866--1645901	3	11.7	3	88	5	54	36	2	0	61	1.11
1647360--1647423	2	33.5	2	73	14	55	50	1	0	48	1.10
1647511--1647754	128	1.9	127	95	0	443	36	7	7	47	1.61
1659520--1659710	54	3.6	54	85	1	242	36	13	20	29	1.91
1660074--1660150	22	3.5	22	96	0	136	32	15	12	38	1.86
1660830--1661035	45	4.6	45	88	0	277	25	22	18	33	1.97
1661054--1661384	45	7.3	45	89	3	493	24	22	20	32	1.98
1660887--1661506	167	3.6	167	83	7	758	25	21	19	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1661054--1661392	183	1.9	182	93	1	581	24	23	20	32	1.98
1661403--1661490	45	2.0	45	86	0	122	26	21	18	34	1.96
1661282--1661579	121	2.5	122	87	2	415	25	19	20	33	1.97
1661830--1661881	3	16.7	3	92	7	86	34	0	0	65	0.93
1661830--1661881	13	4.2	12	97	2	86	34	0	0	65	0.93
1663786--1663841	20	2.8	20	97	0	103	28	14	19	37	1.91
1666096--1666120	2	12.5	2	100	0	50	52	0	0	48	1.00
1666280--1666352	24	3.0	24	81	15	96	53	16	10	19	1.72
1666284--1666353	12	5.8	12	72	12	54	52	17	12	17	1.74
1666282--1666390	48	2.3	49	84	6	134	51	14	13	20	1.76
1666283--1666390	24	4.5	24	71	17	82	50	14	13	20	1.77
1667510--1667545	18	2.0	18	88	0	54	30	16	0	52	1.44
1668550--1668581	13	2.5	13	94	0	55	15	25	43	15	1.86
1668550--1668616	31	2.2	31	94	0	116	17	19	46	16	1.85
1668578--1668611	13	2.6	13	95	0	59	20	14	47	17	1.83
1668560--1668616	18	3.4	18	70	22	61	15	17	49	17	1.81
1670679--1670787	48	2.3	49	83	3	141	50	14	12	22	1.77
1670680--1670785	24	4.4	24	68	11	83	50	15	12	22	1.77
1671907--1671942	18	2.0	18	88	0	54	30	16	0	52	1.44
1672942--1672988	17	2.8	16	81	18	51	25	27	31	14	1.95
1676759--1676794	3	11.7	3	88	5	54	36	2	0	61	1.11
1678376--1678620	128	1.9	128	91	1	404	36	8	7	47	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1690991--1691065	35	2.1	35	95	0	132	33	28	28	10	1.90
1691143--1691233	24	3.8	24	85	2	121	37	19	17	25	1.94
1691143--1691233	47	1.9	48	88	2	139	37	19	17	25	1.94
1693818--1693944	29	4.3	29	84	1	146	45	24	8	21	1.79
1694645--1694813	54	3.2	53	80	5	189	36	14	20	28	1.92
1694676--1694813	54	2.6	54	86	0	195	36	14	21	28	1.92
1695177--1695255	22	3.6	22	94	0	131	34	13	13	37	1.85
1695928--1696138	45	4.7	45	87	1	262	26	22	19	31	1.98
1696157--1696305	45	3.3	45	91	0	226	24	22	18	34	1.96
1696035--1696260	122	1.9	122	87	1	337	25	20	19	34	1.96
1695990--1696471	167	2.9	167	93	0	793	24	21	19	33	1.97
1696324--1696561	45	5.3	45	93	2	406	23	22	21	33	1.97
1695928--1696683	212	3.6	210	78	8	748	24	22	19	32	1.97
1696157--1696693	257	2.1	256	90	1	842	24	22	20	33	1.97
1696585--1696683	45	2.2	45	90	0	153	28	23	17	31	1.97
1696459--1696756	121	2.5	121	90	2	458	26	21	20	32	1.97
1697008--1697037	3	9.7	3	92	7	51	33	0	0	66	0.92
1697527--1697567	19	2.2	19	100	0	82	21	43	24	9	1.83
1707217--1707268	3	16.7	3	80	7	59	34	3	1	59	1.27
1707220--1707279	29	2.2	29	79	8	72	40	3	1	55	1.27
1708340--1708427	28	3.0	28	74	15	72	34	12	2	51	1.52
1708522--1708616	45	2.1	45	82	7	111	44	3	3	49	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1708779--1708822	22	2.0	22	83	12	56	34	0	11	54	1.36
1722138--1722302	85	2.0	82	91	3	267	55	10	3	30	1.49
1724897--1724985	44	2.0	44	97	0	169	32	5	20	41	1.75
1730100--1730135	14	2.6	14	90	0	54	25	13	2	58	1.49
1730583--1730733	30	5.1	30	73	7	103	21	7	7	63	1.46
1736093--1736134	20	2.1	20	86	0	57	40	21	7	30	1.80
1740528--1740579	13	4.0	13	76	0	59	26	21	23	28	1.99
1743719--1743789	20	3.6	21	72	14	62	25	18	25	30	1.98
1748358--1748409	13	4.0	13	76	0	59	26	21	23	28	1.99
1748566--1748592	2	13.5	2	100	0	54	48	0	0	51	1.00
1754599--1754634	14	2.6	14	90	0	54	25	13	2	58	1.49
1760959--1760993	12	3.0	12	87	8	54	20	8	8	62	1.49
1765509--1765550	21	2.0	20	86	4	57	35	16	14	33	1.89
1775737--1775766	12	2.6	12	94	5	53	80	3	16	0	0.85
1778282--1778626	43	8.0	43	89	1	496	27	16	28	26	1.97
1778654--1779340	90	7.7	89	91	2	1042	26	18	21	33	1.96
1778654--1779340	179	3.8	177	90	2	1056	26	18	21	33	1.96
1778654--1779340	269	2.6	266	89	3	1072	26	18	21	33	1.96
1781166--1781299	60	2.3	59	79	8	148	20	8	7	63	1.46
1786543--1786581	15	2.6	15	79	0	51	35	7	12	43	1.72
1787324--1787368	20	2.2	20	88	7	65	37	13	15	33	1.86
1787356--1787394	20	2.0	19	95	5	69	17	30	20	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1787421--1787491	20	3.5	20	98	0	133	30	19	22	26	1.98
1792264--1792295	2	16.0	2	100	0	64	50	0	0	50	1.00
1794555--1794622	27	2.6	27	95	4	122	30	11	16	41	1.84
1796890--1796925	17	2.1	17	100	0	72	33	5	19	41	1.75
1811744--1811777	2	17.5	2	87	6	52	50	0	2	47	1.16
1812711--1812767	22	2.4	23	85	11	80	17	38	3	40	1.67
1812722--1812766	22	2.0	22	95	0	81	15	37	4	42	1.67
1814342--1814379	19	2.0	19	100	0	76	36	10	15	36	1.82
1817198--1817521	157	2.1	157	97	2	607	45	9	5	39	1.59
1830077--1830136	25	2.4	25	97	0	111	16	41	3	38	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24