genome.fa.s9582.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009582.1 Hibiscus syriacus cultivar Beakdansim tig00116959_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4978262

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   

This is table  4  of  24  ( 2799 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
866696--866727	16	1.9	17	93	6	57	40	0	0	59	0.97
866700--866749	19	2.6	19	84	9	66	44	0	0	56	0.99
868165--868197	16	2.1	16	88	11	50	39	0	0	60	0.97
868364--868426	33	2.0	33	84	6	85	41	0	1	57	1.08
868419--868740	129	2.5	129	96	0	590	37	10	9	41	1.74
868745--868796	25	2.0	25	82	17	63	44	1	0	53	1.11
869264--869307	17	2.6	16	86	10	61	27	2	0	70	0.99
870796--870837	7	6.0	7	81	8	50	14	16	14	54	1.71
870796--870837	15	3.0	14	83	10	50	14	16	14	54	1.71
870896--870935	12	3.3	12	89	0	62	22	15	7	55	1.65
870895--870968	27	2.9	27	82	7	93	21	13	6	58	1.59
870895--870956	12	4.9	12	75	11	61	20	12	8	58	1.60
872909--872947	12	3.4	11	82	10	51	82	0	17	0	0.68
877317--877525	54	3.9	54	90	1	321	39	15	21	23	1.91
877897--877950	22	2.5	22	90	0	81	38	9	12	38	1.76
878651--878805	81	1.9	81	89	2	240	27	20	21	30	1.98
878816--879543	113	6.5	113	88	2	1007	37	14	19	28	1.90
878814--879543	338	2.2	339	90	2	1128	37	13	19	28	1.90
879903--879962	20	3.0	20	85	9	79	25	0	3	71	1.01
879913--879963	3	18.0	3	88	11	72	29	0	1	68	1.00
881417--881449	16	2.1	16	88	11	50	39	0	0	60	0.97
881606--881674	33	2.1	33	81	10	79	39	1	1	57	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
881667--881989	129	2.5	129	94	1	549	36	10	10	42	1.73
881985--882034	23	2.0	26	85	11	70	46	2	0	52	1.12
886624--886666	20	2.1	21	86	4	61	60	13	13	11	1.59
886958--886982	10	2.5	10	100	0	50	56	12	12	20	1.67
887918--887951	16	2.3	14	90	10	50	55	0	0	44	0.99
887796--887935	71	2.0	70	84	5	185	52	6	8	32	1.57
888423--888484	21	3.0	21	81	11	65	50	20	0	29	1.49
888446--888485	21	1.9	22	90	10	66	50	22	0	27	1.50
888731--888768	14	2.8	13	84	7	58	52	0	5	42	1.24
895461--895495	18	1.9	18	100	0	70	45	11	0	42	1.40
900285--900329	23	2.0	23	100	0	90	22	8	20	48	1.76
900548--900606	30	2.0	30	82	0	73	32	8	22	37	1.84
904146--904188	15	2.9	14	80	10	50	0	23	9	67	1.19
904553--904613	31	2.0	31	90	0	95	49	1	1	47	1.21
905546--905631	30	2.8	30	80	5	84	40	2	8	48	1.45
907470--907494	4	6.2	4	100	0	50	76	0	0	24	0.80
907892--907922	15	2.1	15	100	0	62	67	19	0	12	1.22
910632--910669	2	19.0	2	100	0	76	50	0	0	50	1.00
919352--919378	14	1.9	14	100	0	54	44	0	22	33	1.53
923409--923975	283	2.0	283	98	0	1089	28	15	26	30	1.96
935129--935154	8	3.2	8	100	0	52	23	0	11	65	1.25
936683--936812	45	2.9	45	78	10	131	43	17	7	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
939177--939216	21	1.9	21	100	0	80	20	27	22	30	1.98
939895--940008	21	5.4	21	91	0	192	32	22	25	19	1.97
940000--940056	21	2.7	21	83	0	78	28	19	22	29	1.98
951420--951461	18	2.3	19	84	12	61	61	4	9	23	1.45
955000--955112	32	3.5	32	92	0	190	16	31	20	30	1.95
964603--964638	4	9.0	4	100	0	72	75	0	25	0	0.81
965377--965409	17	1.9	17	88	11	50	33	0	0	66	0.92
966000--966174	85	2.0	86	98	1	343	33	21	11	33	1.89
969851--970167	157	2.0	160	98	1	613	41	9	11	37	1.74
971470--971518	25	1.9	26	84	12	66	36	20	20	22	1.95
971485--971518	13	2.6	13	80	0	50	41	20	20	17	1.91
976261--976781	262	2.0	262	96	0	963	34	7	20	37	1.81
977540--977698	40	4.0	39	90	2	255	23	15	26	34	1.95
977540--977698	79	2.0	79	91	2	257	23	15	26	34	1.95
977838--977912	25	3.2	25	62	30	65	37	9	25	28	1.87
977802--977973	45	3.8	45	92	0	265	39	8	23	29	1.83
980493--980522	14	2.1	14	93	0	51	23	3	0	73	0.98
980589--980637	13	3.6	13	76	17	55	22	2	16	59	1.47
984040--984065	13	2.0	13	100	0	52	53	0	23	23	1.46
991196--991239	22	2.1	21	84	12	56	31	2	9	56	1.43
995061--995219	63	2.5	63	83	4	178	31	20	21	27	1.98
995205--995262	20	2.6	22	79	20	68	31	20	25	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
995562--995632	30	2.3	30	87	2	97	38	2	23	35	1.70
995828--995907	25	3.2	24	81	13	92	22	27	25	25	2.00
1002838--1002882	21	2.1	22	83	4	56	37	0	2	60	1.09
1004234--1004278	2	22.5	2	95	0	81	51	2	0	46	1.13
1005903--1006649	105	7.1	105	95	1	1318	22	17	26	33	1.96
1007773--1007812	16	2.4	17	83	8	55	0	17	10	72	1.11
1007798--1007833	13	2.6	14	86	4	56	0	13	8	77	0.98
1011584--1011648	2	32.5	2	100	0	130	50	0	0	49	1.00
1013959--1014013	22	2.5	22	78	0	65	30	9	21	38	1.85
1019163--1019189	2	13.5	2	100	0	54	48	0	0	51	1.00
1019556--1019594	5	7.8	5	94	0	69	2	41	38	17	1.64
1019592--1019622	6	5.2	6	100	0	62	0	16	48	35	1.46
1020670--1020716	24	1.9	25	82	4	60	25	19	14	40	1.90
1020932--1020996	30	2.2	30	88	0	94	12	30	23	33	1.91
1023302--1023364	29	2.2	29	91	0	99	53	6	11	28	1.60
1026189--1026262	2	36.5	2	83	12	89	48	1	5	44	1.34
1027354--1027424	33	2.2	33	87	2	99	21	16	21	40	1.91
1033578--1033633	21	2.8	20	91	5	94	30	30	14	25	1.95
1033501--1033691	99	1.9	99	92	2	321	34	26	13	26	1.93
1033619--1033747	57	2.2	58	91	1	206	36	23	11	28	1.90
1034125--1034202	20	3.9	20	77	11	88	26	14	26	32	1.94
1037384--1037415	16	2.0	16	100	0	64	31	18	18	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1040950--1040999	3	16.7	3	91	0	82	68	4	0	28	1.08
1044228--1044289	2	31.5	2	96	3	117	50	0	0	50	1.00
1046843--1046880	19	2.0	19	94	0	67	31	18	5	44	1.72
1047352--1047380	11	2.7	11	94	5	51	0	27	0	72	0.85
1048832--1048881	20	2.5	20	90	0	73	30	20	18	32	1.96
1052905--1053019	36	3.2	36	96	0	203	21	20	31	26	1.98
1054022--1054074	28	1.9	27	92	3	88	52	9	9	28	1.64
1057843--1057896	21	2.6	21	93	0	90	37	12	18	31	1.89
1064221--1064262	3	14.0	3	100	0	84	33	0	0	66	0.92
1067952--1067989	13	2.7	15	84	15	55	34	0	7	57	1.28
1068902--1068930	3	10.0	3	92	7	51	34	0	0	65	0.93
1068999--1069040	2	21.0	2	100	0	84	50	0	0	50	1.00
1069138--1069178	20	2.0	20	95	0	73	39	4	9	46	1.58
1070084--1070150	20	3.3	20	78	0	71	37	20	16	25	1.93
1070141--1070189	20	2.5	20	96	0	89	46	24	12	16	1.81
1070337--1070416	22	3.6	22	89	0	124	20	43	17	18	1.88
1070798--1070869	20	3.7	20	83	1	74	15	16	18	50	1.79
1070806--1070862	20	2.8	20	86	0	78	12	19	17	50	1.77
1072563--1072615	21	2.5	21	81	0	70	18	13	35	32	1.90
1072604--1072738	63	2.1	63	78	5	148	22	12	31	32	1.92
1072835--1072876	12	3.5	12	83	6	50	23	0	7	69	1.13
1073020--1073094	21	3.7	20	78	8	80	24	34	16	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1074576--1074625	20	2.5	20	93	0	82	50	18	14	18	1.79
1074627--1074655	14	2.0	15	93	6	51	10	13	27	48	1.75
1074668--1074740	29	2.5	29	90	0	110	27	20	16	35	1.94
1074953--1074988	18	2.0	18	94	0	63	16	2	25	55	1.55
1077186--1077239	24	2.2	24	87	6	74	42	16	18	22	1.89
1077980--1078017	16	2.5	15	84	12	51	65	0	5	28	1.14
1081354--1081397	21	2.1	21	95	0	79	31	25	20	22	1.98
1081502--1081541	19	2.0	20	90	4	64	37	17	5	40	1.72
1082040--1082176	71	1.9	71	89	2	213	30	13	20	35	1.92
1092495--1092545	11	4.8	11	78	9	52	21	1	3	72	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24