genome.fa.s9585.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009585.1 Hibiscus syriacus cultivar Beakdansim tig00116962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8285662

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   

This is table  32  of  35  ( 4106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7441221--7441267	20	2.3	20	92	0	76	21	19	27	31	1.97
7441256--7441331	20	3.8	20	75	3	80	21	21	19	38	1.94
7444327--7444371	20	2.2	20	100	0	90	20	13	24	42	1.87
7445658--7445700	17	2.5	17	96	0	77	9	23	16	51	1.73
7451194--7451377	42	4.5	41	89	2	253	39	21	17	21	1.93
7451194--7451342	21	7.2	21	69	14	112	37	22	19	20	1.94
7467729--7467758	12	2.5	12	94	0	51	30	10	10	50	1.69
7473792--7473846	28	2.0	28	92	0	92	30	23	18	27	1.97
7473998--7474110	60	1.9	60	85	3	156	39	17	10	31	1.84
7475908--7475953	23	2.0	23	86	4	65	67	0	2	30	1.03
7477666--7477818	44	3.5	44	84	6	177	47	7	18	26	1.74
7477737--7477832	44	2.2	44	77	7	104	50	8	15	26	1.72
7477895--7478003	43	2.5	44	76	15	111	56	4	10	28	1.52
7478734--7478777	18	2.6	17	85	7	63	70	0	4	25	1.06
7479134--7479238	37	2.8	37	82	0	129	30	14	13	41	1.84
7479781--7480442	105	6.3	105	90	3	931	22	18	26	33	1.96
7480611--7480686	36	2.1	36	90	0	116	40	15	21	22	1.90
7480807--7480881	39	1.9	39	83	5	98	37	13	22	26	1.91
7480586--7480904	105	3.1	104	92	2	518	36	11	20	30	1.89
7481027--7481134	36	3.0	36	75	2	119	44	13	14	26	1.83
7480975--7481149	72	2.4	75	83	8	209	42	12	17	27	1.86
7482290--7482826	183	2.9	183	96	0	968	29	21	21	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7486875--7486917	18	2.5	17	85	7	61	67	2	4	25	1.22
7495404--7495485	41	2.0	41	85	4	112	31	21	15	30	1.95
7495476--7495679	20	10.2	20	78	9	184	40	24	16	18	1.90
7495476--7495737	40	6.7	40	75	11	193	40	23	15	21	1.91
7495476--7495698	60	3.7	59	79	9	220	40	23	16	19	1.91
7495667--7495736	19	3.7	19	90	3	97	38	22	8	30	1.84
7495507--7495737	20	11.7	20	78	11	131	40	22	13	22	1.90
7503391--7503821	215	2.0	215	98	1	830	37	18	21	22	1.94
7504399--7504433	13	2.7	13	86	0	52	11	25	0	62	1.28
7506936--7506978	20	2.2	20	86	0	59	30	13	20	34	1.92
7509158--7509194	12	3.1	12	100	0	74	72	0	27	0	0.84
7511257--7511292	18	2.0	18	94	0	63	55	25	2	16	1.55
7511617--7511654	20	1.9	20	88	0	58	23	18	18	39	1.92
7512401--7512487	39	2.2	39	93	0	147	48	19	13	18	1.81
7512749--7512786	20	1.9	20	94	0	67	18	21	23	36	1.95
7512943--7512979	14	2.6	14	91	0	65	48	18	0	32	1.49
7512879--7513029	75	2.0	76	85	7	207	50	16	1	31	1.54
7514377--7514449	21	3.5	21	77	7	76	17	24	38	19	1.93
7514877--7514926	21	2.4	21	82	0	64	38	30	14	18	1.89
7516660--7516693	13	2.6	13	85	0	50	73	11	11	2	1.20
7517179--7517310	39	3.3	40	81	11	155	20	15	25	38	1.92
7517179--7517310	20	6.7	20	78	11	155	20	15	25	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7517168--7517351	99	1.8	101	88	3	282	19	14	24	41	1.88
7520121--7520150	12	2.5	12	94	0	51	36	6	13	43	1.70
7520601--7520642	22	2.0	22	85	4	59	69	2	2	26	1.13
7525091--7525115	6	4.2	6	100	0	50	48	0	0	52	1.00
7526329--7526403	31	2.4	31	91	4	116	24	22	16	37	1.93
7527985--7528019	10	3.5	10	88	0	52	11	5	20	62	1.48
7528856--7528916	31	2.0	32	84	12	83	59	22	1	16	1.46
7530773--7530851	23	3.6	22	81	8	90	18	25	31	24	1.98
7538277--7538541	130	2.0	129	90	3	417	35	19	13	30	1.91
7547197--7547280	40	2.2	37	85	8	114	59	4	1	34	1.26
7547500--7547530	2	15.5	2	100	0	62	51	0	0	48	1.00
7547588--7547735	82	1.9	76	82	10	181	57	2	6	33	1.37
7548199--7548268	35	2.0	35	94	0	122	30	17	11	41	1.84
7548891--7549353	106	4.5	106	84	6	644	24	18	22	35	1.95
7548987--7549353	201	1.8	201	92	1	619	23	18	22	35	1.95
7548790--7549353	106	5.6	99	81	8	502	24	18	22	35	1.96
7548754--7549353	307	2.0	306	85	5	825	24	18	22	34	1.96
7557919--7557943	9	2.8	9	100	0	50	80	0	0	20	0.72
7558249--7558307	23	2.6	23	76	10	66	66	0	3	30	1.08
7558487--7558511	2	12.5	2	100	0	50	52	0	0	48	1.00
7558407--7558522	14	8.1	14	64	20	53	56	2	5	35	1.35
7558967--7559038	35	2.1	35	94	0	126	27	18	11	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7568146--7568177	3	10.7	3	100	0	64	68	0	0	31	0.90
7581447--7581936	123	4.0	125	88	2	704	35	14	13	36	1.85
7581447--7581936	247	2.0	247	88	2	725	35	14	13	36	1.85
7583986--7584058	24	3.0	25	80	9	80	60	1	2	35	1.20
7584197--7584254	29	1.9	31	89	6	93	63	5	15	15	1.47
7585540--7585588	16	3.1	15	80	16	55	55	2	0	42	1.11
7590554--7590729	84	2.1	84	91	2	282	23	21	36	18	1.95
7594338--7594446	31	3.5	31	76	10	123	28	16	18	36	1.92
7594341--7594464	63	2.0	62	87	4	178	28	16	20	34	1.94
7594360--7594478	31	3.8	31	78	4	107	26	16	21	36	1.94
7594424--7594495	30	2.4	31	85	2	92	19	18	25	37	1.94
7594668--7594725	30	1.9	30	86	13	84	31	0	20	48	1.50
7597337--7597493	63	2.5	62	86	3	206	34	21	21	23	1.97
7598280--7598352	31	2.4	31	80	0	83	28	13	23	34	1.93
7598233--7598352	63	1.9	62	81	8	145	27	15	20	35	1.94
7602052--7602104	27	1.9	28	88	3	81	24	1	11	62	1.39
7602214--7602302	37	2.5	36	87	7	119	48	1	1	49	1.16
7602569--7602657	27	3.3	26	74	13	67	44	2	3	49	1.31
7606012--7606044	12	2.5	14	90	9	52	81	0	3	15	0.80
7621215--7621246	16	1.9	16	93	6	55	37	0	0	62	0.95
7625848--7625882	3	11.7	3	93	0	61	65	0	34	0	0.93
7629878--7629919	19	2.3	18	84	12	50	54	11	14	19	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7629888--7629926	19	2.1	19	100	0	78	46	17	15	20	1.84
7634096--7634152	18	2.8	22	66	20	59	42	14	10	33	1.79
7639863--7639917	20	2.8	20	86	5	69	58	1	3	36	1.26
7639906--7639946	15	3.0	14	80	13	50	51	2	0	46	1.14
7639906--7639944	14	2.7	15	88	7	55	53	2	0	43	1.14
7640389--7640451	29	2.2	29	91	0	99	17	33	30	19	1.95
7640515--7640552	20	1.9	20	94	0	67	15	13	50	21	1.78
7640516--7640559	20	2.2	20	87	0	61	15	13	50	20	1.78
7640502--7640608	51	2.1	51	100	0	214	15	12	50	21	1.77
7640566--7640603	20	1.9	20	94	0	67	15	13	50	21	1.78
7641094--7641144	19	2.5	21	72	21	54	31	0	15	52	1.43
7641117--7641179	28	2.2	30	91	5	103	31	0	11	57	1.34
7643526--7643816	146	2.0	145	97	2	548	25	15	29	28	1.96
7644404--7644576	26	7.2	26	73	20	135	42	2	10	44	1.51
7644417--7644483	12	5.3	12	73	16	64	46	4	7	41	1.52
7644484--7644514	15	2.0	16	93	6	55	45	0	9	45	1.36
7644324--7644568	118	2.0	121	89	6	374	43	2	8	45	1.48
7644565--7644600	11	3.4	11	88	3	56	36	0	5	58	1.22
7644407--7644628	14	16.1	14	70	19	85	42	2	9	45	1.48
7644581--7644654	38	1.9	38	83	5	96	45	4	5	44	1.45
7644834--7644866	17	1.9	17	93	0	57	36	6	12	45	1.66
7647066--7647140	32	2.5	30	85	8	91	50	12	0	37	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7647188--7647308	42	2.8	42	72	20	99	47	12	0	40	1.41
7647710--7647840	29	4.6	29	91	1	194	25	31	28	14	1.95
7647881--7647927	21	2.2	21	100	0	94	14	29	25	29	1.95
7647928--7647987	29	2.1	29	96	0	111	18	28	28	25	1.98
7648521--7648652	45	3.0	45	80	14	134	40	0	12	47	1.41
7648810--7648856	16	3.0	16	84	9	53	29	0	10	59	1.31
7648831--7648861	15	2.1	14	94	5	53	38	0	6	54	1.26
7653496--7653558	28	2.2	30	91	5	103	57	11	0	31	1.34
7653500--7653565	28	2.4	28	85	10	98	56	10	0	33	1.34
7653535--7653583	21	2.3	21	85	3	71	53	16	0	30	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35