genome.fa.s9585.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009585.1 Hibiscus syriacus cultivar Beakdansim tig00116962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8285662

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   

This is table  35  of  35  ( 4106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8238580--8238635	17	3.5	16	81	13	71	78	1	12	7	1.02
8239774--8240158	48	8.3	48	79	9	433	26	22	18	32	1.97
8239772--8240132	89	4.0	89	88	6	519	27	22	18	31	1.97
8240394--8240434	3	13.7	3	85	10	57	34	0	2	63	1.08
8240394--8240443	12	4.2	12	82	14	50	34	2	2	62	1.18
8245051--8245093	12	3.6	12	87	0	68	6	39	2	51	1.42
8245043--8245097	24	2.3	24	93	0	92	7	38	1	52	1.40
8247965--8248023	29	2.0	29	100	0	118	47	3	13	35	1.60
8249283--8249340	10	5.6	10	73	15	55	22	46	20	10	1.81
8249562--8249645	29	2.9	29	83	0	96	13	29	39	17	1.88
8264131--8264195	20	3.2	20	79	12	78	29	27	18	24	1.98
8264131--8264227	41	2.4	41	85	0	131	30	22	18	27	1.97
8264370--8264420	22	2.3	22	96	0	93	19	45	15	19	1.86
8264503--8264556	22	2.5	22	93	0	90	29	1	7	61	1.34
8264496--8264557	22	2.6	24	82	12	83	30	1	6	61	1.31
8264853--8264920	20	3.4	20	79	0	64	17	13	23	45	1.84
8266740--8266828	20	4.4	20	84	0	88	19	14	23	42	1.88
8266775--8266838	20	3.2	20	86	0	83	15	14	20	50	1.78
8267309--8267410	21	4.9	21	73	4	80	20	33	19	26	1.97
8268898--8268961	20	3.2	20	84	0	83	46	20	17	15	1.83
8269000--8269210	20	10.9	20	83	6	245	25	18	21	34	1.96
8269181--8269463	140	2.0	140	97	0	539	43	15	12	27	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8271769--8271828	24	2.5	24	83	0	84	38	18	18	25	1.93
8272644--8272770	20	6.3	20	75	8	114	23	18	25	32	1.97
8280871--8280910	13	3.0	13	92	3	62	42	0	57	0	0.98
8281185--8281220	2	18.0	2	100	0	72	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35

The End!