genome.fa.s9585.2.7.7.80.10.50.1000.30.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009585.1 Hibiscus syriacus cultivar Beakdansim tig00116962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8285662

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   

This is table  30  of  35  ( 4106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6964281--6964543	95	2.7	94	83	5	312	32	17	17	32	1.93
6968518--6968581	28	2.3	28	82	12	78	78	3	9	9	1.07
6971004--6971086	37	2.2	37	87	4	114	38	37	10	13	1.79
6971263--6971352	37	2.5	36	85	5	110	35	38	13	12	1.82
6982560--6982593	17	1.9	18	88	5	52	35	0	29	35	1.58
6985721--6985805	31	2.8	31	98	1	163	18	18	22	40	1.92
6989376--6989534	64	2.5	64	83	4	178	33	20	16	28	1.95
6990183--6990276	31	3.0	31	90	0	143	22	20	22	35	1.96
6990280--6990336	30	1.9	30	100	0	114	22	17	24	35	1.95
7001238--7001274	13	2.8	13	83	0	56	21	45	21	10	1.82
7001234--7001286	17	3.3	17	72	22	60	20	47	20	11	1.81
7003610--7003712	24	4.3	24	75	7	102	26	12	20	40	1.88
7004774--7004853	36	2.2	36	84	0	97	45	8	3	42	1.53
7012242--7012288	25	1.9	24	86	4	67	46	8	29	14	1.74
7017843--7017872	15	2.0	15	93	0	51	43	0	0	56	0.99
7018648--7018695	19	2.4	19	82	6	60	68	10	2	18	1.28
7024265--7024317	21	2.5	21	84	6	72	20	24	18	35	1.95
7024925--7024973	20	2.5	20	86	0	71	34	24	20	20	1.96
7025002--7025045	20	2.2	20	87	0	61	20	18	25	36	1.95
7025013--7025068	21	2.7	21	88	2	78	10	16	23	50	1.76
7026915--7027016	20	5.4	20	81	13	135	37	21	20	20	1.95
7027060--7027106	20	2.3	20	88	0	67	21	19	23	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7027147--7027190	20	2.2	20	87	0	61	25	20	18	36	1.95
7027178--7027210	14	2.4	14	94	0	57	12	18	21	48	1.80
7027043--7027210	87	1.9	87	92	2	284	17	19	21	41	1.90
7027682--7027723	21	2.2	19	87	12	59	21	35	19	23	1.96
7029236--7029306	33	2.1	34	89	2	108	15	23	15	45	1.85
7029251--7029331	33	2.4	33	83	2	90	17	24	17	40	1.90
7029303--7029391	20	4.4	20	82	2	108	19	20	23	37	1.94
7029379--7029433	14	3.9	14	95	0	101	9	21	27	41	1.83
7031815--7031868	24	2.3	23	90	6	90	38	20	18	22	1.93
7031815--7031881	24	2.8	24	84	2	64	37	20	17	23	1.94
7032723--7032831	41	2.7	40	84	4	139	22	21	20	36	1.95
7032725--7032831	20	5.3	20	83	4	135	22	20	19	37	1.94
7032828--7032873	21	2.2	21	88	0	65	36	13	28	21	1.91
7032921--7032962	19	2.2	19	95	0	75	21	19	26	33	1.97
7032932--7032971	19	2.1	19	90	0	62	27	20	22	30	1.98
7033236--7033297	19	3.6	19	70	30	66	58	3	6	32	1.40
7033234--7033292	31	2.0	27	87	12	82	61	3	6	28	1.38
7035257--7035307	24	2.1	24	100	0	102	11	29	13	45	1.79
7043527--7043896	185	2.0	185	97	0	704	40	19	20	18	1.92
7049786--7049812	2	13.5	2	100	0	54	48	0	0	51	1.00
7069320--7069371	22	2.4	22	96	3	97	51	0	0	48	1.00
7069359--7069405	22	2.1	23	88	4	69	53	8	0	38	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7070924--7070962	15	2.4	17	79	20	55	25	33	25	15	1.95
7070931--7070963	15	2.2	15	100	0	66	27	33	24	15	1.95
7071048--7071117	29	2.4	29	97	2	133	18	21	15	44	1.87
7071104--7071156	23	2.2	26	86	10	76	32	24	5	37	1.79
7071468--7071691	64	3.5	63	83	6	245	27	19	20	32	1.97
7075695--7075723	15	1.9	15	100	0	58	27	27	24	20	1.99
7075807--7075880	29	2.6	29	97	2	141	18	21	16	43	1.88
7076227--7076450	64	3.5	65	84	3	249	27	19	20	32	1.97
7076484--7076537	21	2.6	21	100	0	108	31	22	18	27	1.97
7077246--7077919	216	3.1	215	91	4	1032	23	12	27	37	1.90
7077875--7077963	38	2.4	37	85	7	117	15	11	34	38	1.83
7078504--7078553	18	2.9	18	82	5	68	32	28	6	34	1.81
7082915--7083025	27	4.1	27	97	0	204	12	45	13	28	1.80
7089477--7089513	14	2.6	15	79	12	51	51	0	21	27	1.48
7093493--7093831	169	2.0	170	99	0	671	29	12	28	29	1.93
7094370--7094422	2	27.0	2	96	3	99	49	0	0	50	1.00
7094524--7094582	14	4.1	14	80	4	64	38	5	18	37	1.73
7094526--7094584	29	2.0	29	90	0	91	40	6	18	33	1.77
7094821--7094886	32	2.2	28	80	17	80	48	0	4	46	1.22
7095071--7095135	21	3.2	20	82	4	67	46	1	1	50	1.20
7095087--7095235	49	3.1	49	77	16	134	48	0	2	48	1.17
7095133--7095172	20	1.9	20	90	10	62	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7095119--7095232	27	4.7	24	68	25	71	49	0	1	49	1.11
7095793--7095830	19	2.0	19	100	0	76	21	36	31	10	1.87
7095796--7095843	19	2.4	19	89	6	69	22	39	22	14	1.91
7101232--7101312	21	3.8	21	82	7	83	23	34	24	17	1.96
7101230--7101291	23	2.9	21	85	7	72	22	33	25	17	1.96
7106541--7106717	60	3.0	60	75	5	151	40	7	17	33	1.79
7109849--7110108	75	3.5	75	92	0	421	24	30	10	34	1.89
7113647--7113672	5	5.2	5	100	0	52	23	57	19	0	1.40
7123254--7123306	21	2.5	21	81	6	63	20	24	18	35	1.95
7123296--7123386	20	4.5	20	87	2	137	37	18	20	23	1.94
7123281--7123369	41	2.2	41	89	0	133	34	19	19	26	1.95
7123564--7123625	18	3.0	22	72	18	69	25	38	16	19	1.92
7123961--7124083	20	6.6	19	83	11	121	13	18	23	44	1.85
7124048--7124091	20	2.2	20	87	0	61	13	13	20	52	1.74
7126121--7126161	21	1.9	21	85	5	55	26	14	14	43	1.84
7126281--7126384	20	5.5	20	83	13	148	40	22	20	17	1.91
7126284--7126422	54	2.6	54	93	1	226	41	21	21	15	1.90
7126412--7126564	34	4.4	34	73	11	137	16	21	20	40	1.91
7126431--7126584	20	8.4	20	75	18	129	17	19	21	41	1.90
7127070--7127111	21	2.2	19	87	12	59	21	35	19	23	1.96
7127065--7127166	42	2.4	42	75	3	107	21	34	20	23	1.97
7128531--7128566	14	2.6	14	90	0	54	30	0	22	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7128780--7128866	19	4.6	19	100	0	174	14	26	16	42	1.87
7128868--7128936	20	3.5	20	86	4	95	17	20	26	36	1.94
7131368--7131421	24	2.2	24	93	0	90	40	20	18	20	1.91
7131368--7131435	24	2.8	24	84	0	64	38	20	17	23	1.93
7132274--7132331	20	2.9	20	79	5	55	25	22	20	31	1.98
7132299--7132370	20	3.5	20	75	3	81	22	22	20	34	1.97
7132360--7132412	21	2.5	21	81	0	61	33	16	26	22	1.96
7147740--7147770	2	15.5	2	100	0	62	51	0	0	48	1.00
7152769--7152798	2	15.0	2	100	0	60	50	0	0	50	1.00
7153280--7153346	30	2.2	29	89	5	107	4	22	25	47	1.70
7154610--7154650	4	11.0	4	94	5	61	73	0	0	26	0.84
7157455--7157514	3	20.3	3	80	10	70	65	0	1	33	1.03
7158304--7158337	10	3.4	10	91	0	50	70	0	8	20	1.13
7158301--7158339	15	2.6	15	87	0	51	71	0	10	17	1.12
7158779--7158818	19	2.2	19	86	13	57	67	12	0	20	1.22
7159682--7159730	19	2.6	19	84	9	57	24	28	20	26	1.99
7159768--7159823	21	2.7	21	94	0	94	25	25	26	23	2.00
7168249--7168391	56	2.5	55	78	9	155	28	24	20	25	1.99
7180480--7180517	2	20.0	2	89	10	62	50	0	0	50	1.00
7181149--7181175	2	13.5	2	100	0	54	48	0	0	51	1.00
7181990--7182023	2	17.0	2	100	0	68	50	0	0	50	1.00
7182212--7182376	82	2.0	83	96	1	305	52	7	0	39	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7184043--7184144	50	2.0	50	100	0	204	28	15	13	42	1.85
7187227--7187474	123	2.0	123	99	0	487	35	16	16	31	1.91
7187535--7187676	71	2.0	71	100	0	284	23	12	30	32	1.92
7188711--7188741	2	15.5	2	100	0	62	51	0	0	48	1.00
7189007--7189054	25	1.9	25	95	0	87	18	35	10	35	1.85
7190768--7190839	3	24.0	3	100	0	144	33	0	0	66	0.92
7191473--7191525	20	2.9	18	76	13	54	39	7	0	52	1.30
7192832--7192909	39	2.0	39	92	0	129	38	14	21	25	1.91
7206996--7207103	53	2.0	53	100	0	216	25	22	12	39	1.89
7211620--7211663	15	2.8	16	80	16	56	59	0	0	40	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35