genome.fa.s9591.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009591.1 Hibiscus syriacus cultivar Beakdansim tig00116970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2451160

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1252 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2316716--2316771	21	2.7	21	100	0	112	39	10	10	39	1.75
2320243--2320276	16	2.1	16	89	10	52	61	2	0	35	1.11
2321540--2321571	16	1.9	17	93	6	57	46	28	0	25	1.53
2326184--2326225	22	1.9	22	95	0	75	23	21	28	26	1.99
2331073--2331141	18	3.6	18	80	14	84	20	23	31	24	1.98
2336010--2336073	18	3.3	18	80	16	83	21	23	32	21	1.98
2342772--2342822	24	2.1	24	82	7	59	13	21	31	33	1.92
2343844--2343918	18	4.1	18	86	6	114	28	30	21	20	1.98
2343843--2343916	38	1.9	38	94	0	130	27	31	21	20	1.98
2344480--2344600	63	1.9	63	89	0	188	23	19	21	36	1.95
2345216--2345250	18	1.9	18	88	11	54	20	22	2	54	1.58
2350526--2350600	18	4.1	18	84	6	105	28	29	21	21	1.98
2363901--2363939	20	2.0	20	89	0	60	33	10	23	33	1.88
2378840--2378917	31	2.5	31	95	0	147	35	15	33	15	1.89
2380153--2380196	13	3.4	13	80	0	52	40	6	15	36	1.74
2380143--2380196	26	2.1	26	89	0	81	38	7	18	35	1.79
2380150--2380207	26	2.2	26	87	0	80	36	8	20	34	1.84
2382375--2382471	44	2.2	44	84	14	121	27	23	20	27	1.99
2383442--2383581	64	2.2	65	87	3	194	27	19	21	31	1.97
2385621--2385715	47	2.0	47	97	0	181	25	15	18	40	1.91
2386406--2386462	30	1.9	29	86	10	80	33	7	5	54	1.50
2389995--2390031	2	19.0	2	94	5	67	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2390914--2391017	37	2.8	37	83	1	129	29	13	14	42	1.84
2391560--2392218	105	6.3	105	87	4	850	23	17	25	33	1.96
2391561--2392218	207	3.2	205	86	4	813	23	17	24	33	1.96
2392387--2392457	35	2.0	35	83	2	88	40	15	21	22	1.90
2392362--2392679	105	3.1	103	90	3	471	37	11	20	30	1.88
2392794--2392906	36	3.2	36	70	5	104	43	14	16	25	1.86
2392749--2392922	71	2.4	73	84	9	214	41	12	18	27	1.87
2392766--2392881	36	3.1	35	68	8	88	37	14	18	28	1.91
2394065--2394416	183	1.9	183	96	1	652	30	21	20	27	1.98
2398488--2398531	2	22.0	2	95	0	79	52	0	0	47	1.00
2398727--2398778	14	3.8	14	75	14	54	76	0	1	21	0.87
2402956--2403109	55	2.7	55	80	7	159	37	16	3	42	1.65
2409480--2409520	21	1.9	21	90	5	64	41	2	0	56	1.13
2409480--2409532	21	2.5	20	82	14	61	41	3	0	54	1.18
2415513--2415668	47	3.4	45	86	6	224	39	5	23	32	1.76
2424413--2424451	14	2.8	14	76	0	51	30	10	25	33	1.89
2424661--2424686	3	8.7	3	100	0	52	0	0	30	69	0.89
2425213--2425322	45	2.5	45	88	4	152	29	22	10	38	1.87
2425427--2425628	40	5.1	40	95	0	350	33	26	15	24	1.95
2428111--2428251	47	3.1	45	90	5	228	41	6	20	31	1.78
2429204--2429281	24	3.2	24	77	0	75	25	12	17	43	1.85
2431275--2431307	15	2.2	15	94	0	57	21	48	21	9	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2431978--2432033	28	2.0	28	89	3	87	30	12	14	42	1.82
2433339--2433388	24	2.1	24	85	7	66	28	10	16	46	1.78
2436479--2436522	17	2.6	17	89	7	63	11	2	31	54	1.48
2438924--2439897	134	7.3	134	81	4	1013	30	15	20	32	1.94
2438924--2439941	399	2.5	397	78	6	1093	30	15	20	33	1.94
2440466--2440566	42	2.4	41	75	4	105	35	19	20	23	1.96
2440876--2442582	4	430.0	4	97	1	3172	25	0	25	49	1.56
2443909--2444041	44	3.0	43	82	4	158	30	20	13	36	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!