genome.fa.s9591.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009591.1 Hibiscus syriacus cultivar Beakdansim tig00116970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2451160

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  7  of  11  ( 1252 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1449123--1449531	59	6.9	59	88	2	518	31	21	14	32	1.93
1449855--1449891	17	2.1	19	90	10	60	35	32	5	27	1.79
1449853--1449902	17	2.6	18	81	18	57	34	28	12	26	1.92
1452090--1452181	34	2.7	35	81	3	105	38	10	13	38	1.79
1452090--1452189	17	5.7	18	75	12	75	39	11	13	37	1.79
1456914--1456977	32	2.0	32	96	0	119	28	17	21	32	1.96
1459875--1459988	55	2.1	56	93	1	194	21	19	14	45	1.85
1464269--1464296	2	14.0	2	100	0	56	50	0	0	50	1.00
1464592--1464665	10	7.0	10	72	11	58	14	10	21	52	1.72
1464611--1464662	24	2.2	24	92	0	86	11	11	23	53	1.69
1464618--1464682	34	1.9	34	87	6	96	15	9	15	60	1.59
1465615--1465704	45	2.0	46	88	2	137	30	16	24	28	1.97
1472312--1472351	21	1.9	21	85	10	55	35	10	2	52	1.48
1474334--1474386	26	2.0	26	88	0	79	30	15	24	30	1.95
1474680--1474757	7	11.1	7	83	0	84	46	33	0	20	1.51
1474680--1474761	28	2.9	28	85	7	112	46	31	0	21	1.52
1476006--1476063	23	2.6	23	97	2	109	32	18	20	27	1.97
1476305--1476371	16	4.3	16	92	3	102	10	10	19	59	1.58
1476303--1476363	32	1.9	32	96	0	113	8	13	22	55	1.64
1476602--1476646	21	2.1	21	91	0	72	46	6	17	28	1.73
1476877--1476966	31	2.9	31	85	5	110	51	12	4	32	1.59
1478183--1478226	20	2.3	19	80	4	52	54	2	2	40	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1478169--1478240	30	2.5	28	84	8	90	47	5	1	45	1.34
1478183--1478303	32	3.9	31	78	10	113	47	5	2	44	1.40
1480786--1480832	18	2.6	18	89	3	67	63	4	4	27	1.31
1481219--1481274	27	2.0	28	86	3	78	48	3	0	48	1.19
1481259--1481297	18	2.2	18	90	0	60	56	0	0	43	0.99
1482509--1482551	3	14.3	3	90	0	68	30	2	0	67	1.03
1482748--1482788	21	1.9	21	85	5	55	65	2	0	31	1.05
1486781--1487010	102	2.3	102	89	0	379	18	18	28	34	1.95
1486793--1487076	102	2.8	102	84	3	259	21	18	26	33	1.96
1499825--1499935	37	3.0	36	89	2	159	41	18	15	24	1.89
1499934--1500069	48	2.8	48	87	0	200	30	20	16	33	1.94
1500100--1500315	48	4.5	48	88	5	303	30	24	13	31	1.94
1500244--1500653	115	3.6	114	85	5	551	31	22	15	31	1.94
1501706--1501771	28	2.4	28	97	0	123	27	16	25	30	1.97
1502173--1502198	10	2.6	10	100	0	52	26	0	0	73	0.84
1507307--1507361	19	3.0	18	79	12	67	23	18	10	47	1.80
1507306--1507358	18	2.9	18	81	13	63	20	18	11	49	1.78
1509798--1509918	63	1.9	63	91	0	197	35	22	19	23	1.96
1510325--1510379	21	2.7	20	80	11	58	41	3	18	36	1.68
1510483--1510555	18	3.9	18	82	7	101	20	21	30	27	1.98
1511864--1511927	14	4.6	14	98	1	121	28	7	35	28	1.85
1516676--1516726	21	2.4	21	100	0	102	31	23	15	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1516739--1516859	63	1.9	63	91	3	199	35	22	19	23	1.96
1516761--1516902	63	2.2	64	79	8	157	33	19	21	25	1.97
1517424--1517496	18	3.9	18	85	7	110	19	20	31	28	1.97
1517424--1517497	38	1.9	38	94	0	130	20	20	31	28	1.97
1521596--1521712	23	5.4	21	75	9	76	71	0	9	17	1.17
1521671--1521802	57	2.3	55	78	8	133	72	2	3	21	1.09
1521676--1521818	31	4.7	32	76	16	94	71	2	3	23	1.12
1521764--1521858	35	2.6	36	78	15	115	64	3	1	31	1.16
1521846--1521875	2	15.0	2	100	0	60	50	0	0	50	1.00
1523255--1523331	39	2.0	38	87	2	109	24	6	24	44	1.77
1523329--1523447	36	3.2	37	85	11	172	41	14	19	25	1.89
1523522--1523580	29	2.0	29	83	6	75	30	10	22	37	1.87
1523556--1523628	37	2.0	37	94	0	128	41	13	19	26	1.88
1523529--1523764	102	2.3	102	90	0	373	37	11	18	32	1.87
1523558--1523642	37	2.3	37	84	6	111	44	12	17	24	1.84
1523677--1523942	87	3.1	87	93	0	451	36	11	18	34	1.86
1524273--1524507	106	2.2	106	89	2	350	22	18	22	36	1.95
1525129--1525209	32	2.5	32	85	2	117	40	17	11	30	1.84
1526131--1526265	69	2.0	69	89	0	207	24	14	24	37	1.92
1526340--1526393	28	2.0	27	89	7	83	5	12	3	77	1.07
1526340--1526392	27	2.0	27	89	10	83	5	13	3	77	1.09
1526341--1526391	13	3.7	15	75	15	56	3	13	3	78	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1529661--1529685	2	12.5	2	100	0	50	52	0	0	48	1.00
1532841--1532962	4	30.5	4	93	0	163	44	0	6	49	1.28
1532841--1532974	28	4.8	28	93	0	187	42	0	8	49	1.32
1532900--1532976	8	9.6	8	85	0	73	33	0	15	50	1.44
1541903--1542082	90	2.0	90	100	0	360	24	20	11	44	1.83
1544063--1544178	40	2.8	40	80	5	108	27	22	12	37	1.91
1544063--1544176	20	5.6	20	72	4	86	27	22	13	36	1.91
1544090--1544178	40	2.2	40	85	0	124	29	22	12	35	1.91
1548150--1548193	20	2.2	20	87	0	61	36	22	11	29	1.89
1560130--1560571	218	2.0	219	95	0	796	34	19	17	28	1.94
1564475--1564512	19	2.0	19	94	0	67	39	28	21	10	1.86
1565150--1565197	21	2.3	22	85	7	73	12	20	0	66	1.24
1565131--1565454	152	2.1	151	94	2	562	18	22	3	55	1.56
1565306--1565346	21	2.0	21	90	9	66	14	19	0	65	1.26
1565307--1565351	20	2.2	21	84	11	58	13	22	0	64	1.28
1574985--1575014	15	2.0	15	93	0	51	33	10	26	30	1.89
1578148--1578273	23	5.4	23	80	3	119	29	24	19	26	1.99
1584289--1584347	10	6.0	9	79	15	55	1	16	3	77	0.98
1584601--1584651	19	2.7	19	85	14	70	60	0	15	23	1.35
1585939--1586244	151	2.0	152	98	0	596	41	12	15	30	1.84
1588590--1588628	20	1.9	21	94	5	71	69	7	0	23	1.14
1590756--1591244	83	5.9	83	81	4	509	24	17	23	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1590663--1591244	167	3.5	166	79	4	543	24	17	23	34	1.96
1591633--1591734	43	2.4	43	86	3	134	22	15	30	31	1.95
1591812--1591941	64	2.0	64	88	2	190	30	12	21	36	1.90
1592197--1592271	32	2.3	32	88	0	105	33	24	10	32	1.89
1592418--1592479	22	2.7	22	78	14	72	46	4	14	33	1.66
1597618--1597716	49	2.0	49	94	3	173	32	11	1	55	1.42
1612505--1612587	38	2.2	38	95	0	148	38	16	8	36	1.79
1614338--1614371	18	1.9	18	94	5	61	38	5	5	50	1.51
1614719--1614797	24	3.5	24	67	19	60	30	20	15	34	1.93
1614719--1614817	44	2.2	44	83	0	135	29	21	16	33	1.95
1614859--1614915	22	2.6	21	83	10	78	33	24	21	21	1.97
1620345--1620776	103	4.2	103	96	0	774	25	14	24	36	1.93
1620785--1620847	23	2.7	23	85	9	76	19	25	28	26	1.98
1626317--1626645	103	3.2	103	96	0	613	24	13	24	36	1.92
1626654--1626716	23	2.7	23	87	0	90	20	28	25	25	1.99
1629634--1629668	18	1.9	18	94	0	61	25	0	8	65	1.21
1629634--1629678	18	2.4	18	85	7	54	24	2	8	64	1.34
1631981--1632059	24	3.5	23	71	28	71	31	20	16	31	1.95
1631982--1632079	44	2.2	41	81	18	110	32	20	16	30	1.94
1633197--1633234	9	4.2	9	100	0	76	31	10	10	47	1.72
1639569--1639972	30	13.5	31	71	14	201	39	7	1	51	1.38
1639582--1639972	62	6.6	58	73	13	241	39	6	1	51	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1639570--1639780	32	6.9	31	72	16	138	39	7	1	51	1.40
1639731--1639888	57	2.7	56	75	17	135	39	6	1	51	1.40
1639864--1639970	56	1.9	57	86	5	155	39	7	0	52	1.36
1639864--1639964	25	3.7	26	74	15	80	38	7	0	52	1.37
1639980--1640079	30	3.1	31	80	9	103	55	2	9	34	1.43
1640061--1640203	29	4.9	29	79	11	132	55	0	6	37	1.30
1640061--1640203	60	2.4	57	79	9	153	55	0	6	37	1.30
1644026--1644248	107	2.1	107	87	3	315	37	18	10	33	1.85
1645023--1645077	20	2.8	20	89	5	78	58	0	3	38	1.16
1648736--1648796	20	3.1	20	83	2	79	40	16	14	27	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11