genome.fa.s9591.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009591.1 Hibiscus syriacus cultivar Beakdansim tig00116970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2451160

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1252 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1648836--1648882	20	2.3	20	88	0	67	34	17	17	31	1.92
1652176--1652226	20	2.5	20	83	0	66	39	15	17	27	1.90
1656859--1657116	134	1.9	134	85	3	358	27	18	20	33	1.96
1657016--1657235	55	4.0	55	80	4	230	32	19	18	30	1.95
1657270--1657440	62	2.7	63	81	9	181	32	15	23	28	1.95
1657300--1657440	62	2.3	62	87	1	192	31	15	26	26	1.96
1659242--1659296	17	3.3	16	80	12	58	3	20	0	76	0.94
1660918--1661301	190	2.0	194	97	2	731	33	19	12	34	1.89
1672636--1672725	23	3.9	23	82	2	108	37	17	18	25	1.93
1672639--1672742	23	4.5	23	81	2	100	41	17	16	25	1.89
1672718--1672781	30	2.0	32	88	8	96	56	20	7	15	1.64
1673295--1673471	88	2.0	89	98	1	347	37	18	18	26	1.93
1674225--1675472	126	10.1	126	77	3	983	43	12	22	20	1.86
1674255--1675456	249	4.9	250	76	7	948	43	12	22	21	1.86
1675136--1675488	123	2.8	123	79	1	382	43	10	22	23	1.84
1675649--1675732	42	2.0	42	95	2	152	51	11	25	11	1.73
1684044--1684102	22	2.7	22	92	2	93	15	25	38	20	1.91
1687420--1687459	20	2.0	20	100	0	80	15	25	25	35	1.94
1690432--1690471	21	1.9	21	85	10	55	35	10	2	52	1.48
1695600--1695684	41	2.1	40	86	6	118	40	18	17	23	1.92
1695782--1695869	18	5.0	18	77	9	83	44	9	10	36	1.70
1695822--1695880	18	3.3	17	83	4	55	47	15	10	27	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1696086--1696131	3	15.3	3	100	0	92	34	0	0	65	0.93
1703702--1703790	18	4.9	18	83	9	110	43	11	8	35	1.72
1703703--1703790	36	2.4	36	88	0	131	44	11	9	35	1.72
1703991--1704060	3	23.0	3	97	2	131	32	0	0	67	0.91
1709090--1709155	30	2.2	30	89	5	98	30	16	30	22	1.96
1709850--1709885	2	18.0	2	100	0	72	50	0	0	50	1.00
1712606--1712671	30	2.2	30	89	5	98	30	16	30	22	1.96
1715111--1715338	72	3.2	70	77	10	207	47	13	8	30	1.73
1716172--1716211	20	2.0	21	90	5	64	47	5	10	37	1.59
1716935--1717065	3	43.7	3	92	0	190	62	0	4	32	1.15
1717280--1717584	100	3.0	99	87	2	414	45	11	10	32	1.74
1717500--1717660	78	2.1	76	89	2	241	42	9	14	33	1.79
1717391--1717931	171	3.1	174	83	4	678	43	11	11	32	1.78
1717578--1717760	100	1.8	99	80	6	217	45	11	13	29	1.78
1717678--1717815	71	1.9	71	86	2	197	44	12	12	30	1.79
1717749--1718044	100	3.0	100	87	0	403	43	12	10	33	1.76
1718695--1719262	107	5.3	106	85	5	692	36	13	11	38	1.81
1721653--1721700	20	2.3	22	85	7	64	43	0	2	54	1.12
1729100--1729126	2	13.5	2	100	0	54	48	0	0	51	1.00
1729787--1729822	3	12.0	3	93	0	63	63	0	2	33	1.08
1730344--1730381	19	2.0	19	89	0	58	47	0	0	52	1.00
1733312--1733351	18	2.3	17	86	4	53	67	2	0	30	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1733348--1733376	2	14.5	2	100	0	58	51	0	0	48	1.00
1733384--1733442	18	3.1	18	75	15	64	55	0	1	42	1.09
1733320--1733442	40	3.0	40	82	9	142	57	0	0	40	1.10
1734939--1735019	3	27.0	3	77	5	74	59	1	1	38	1.13
1734939--1735019	30	2.7	30	82	3	92	59	1	1	38	1.13
1735388--1735704	118	2.6	117	83	8	332	26	20	14	39	1.90
1735388--1735810	112	3.6	117	76	11	341	26	20	15	38	1.92
1735871--1736105	73	3.2	72	91	3	353	29	22	21	25	1.99
1736784--1736834	22	2.3	22	89	0	75	33	19	13	33	1.91
1736796--1736837	22	1.9	22	100	0	84	33	16	16	33	1.92
1740242--1740303	32	1.9	32	96	0	115	19	19	17	43	1.88
1740800--1740838	8	4.8	8	87	6	60	0	23	0	76	0.78
1743534--1743562	12	2.3	13	94	5	51	55	6	13	24	1.63
1745749--1745791	18	2.3	18	84	8	50	65	2	0	32	1.06
1745812--1745873	19	3.1	19	81	9	79	56	0	1	41	1.09
1745807--1745879	21	3.5	20	80	12	85	56	0	1	42	1.08
1747804--1747893	3	30.0	3	75	4	74	62	1	1	35	1.10
1747804--1747893	30	3.0	30	80	3	92	62	1	1	35	1.10
1752774--1752857	42	2.0	42	92	0	141	21	13	28	36	1.91
1753150--1753208	31	1.9	31	92	0	100	40	6	10	42	1.65
1753789--1753813	13	1.9	13	100	0	50	48	0	4	48	1.20
1754037--1754085	18	2.6	19	78	18	57	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1754114--1754162	14	3.8	14	69	20	52	57	0	0	42	0.99
1754104--1754167	24	2.5	24	80	7	74	56	0	0	43	0.99
1755451--1755540	21	4.3	21	76	0	63	32	14	16	36	1.89
1758389--1758461	3	24.3	3	97	0	137	67	1	0	31	1.00
1758807--1758856	26	2.0	24	84	7	64	20	8	20	52	1.71
1758961--1759007	21	2.2	21	84	0	58	36	12	14	36	1.85
1759890--1759934	22	2.0	22	83	8	56	64	0	2	33	1.06
1760047--1760076	13	2.2	13	94	5	51	86	0	0	13	0.57
1759996--1760074	5	14.8	5	76	18	54	78	2	6	12	1.04
1760141--1760180	18	2.2	18	90	0	62	70	0	7	22	1.12
1761481--1761752	123	2.2	123	84	2	368	26	12	22	38	1.90
1761673--1761804	57	2.3	56	94	1	228	30	14	19	35	1.92
1762900--1763058	85	1.9	80	87	6	228	36	9	24	29	1.87
1767578--1767634	26	2.2	26	100	0	114	54	3	15	26	1.57
1769276--1769399	59	2.1	59	100	0	248	23	18	12	45	1.84
1769467--1770255	139	5.7	138	77	8	653	27	20	17	34	1.95
1771368--1771711	144	2.4	144	86	3	494	29	14	27	28	1.95
1771591--1771842	84	3.0	83	84	2	306	32	16	25	25	1.96
1771819--1771905	41	2.1	42	85	6	115	35	19	17	27	1.94
1771819--1771925	42	2.6	41	79	8	128	34	20	18	26	1.96
1772026--1772212	52	3.6	52	83	3	205	41	19	10	29	1.84
1772237--1772371	40	3.5	38	76	9	132	39	14	18	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1772265--1772406	75	1.9	72	85	7	196	35	13	20	30	1.91
1772304--1772427	36	3.4	36	74	6	117	34	13	20	30	1.92
1772711--1772913	37	5.8	37	72	19	184	39	6	20	33	1.78
1772606--1772884	102	2.7	101	83	6	330	39	8	20	31	1.84
1772809--1772955	35	4.1	35	80	11	154	40	7	19	31	1.80
1772840--1772898	18	3.2	18	69	21	50	45	5	23	25	1.73
1775289--1775326	20	1.9	20	94	0	67	39	18	21	21	1.93
1775314--1775374	22	2.8	22	92	0	104	54	8	22	14	1.67
1779330--1779383	21	2.6	21	73	23	51	50	9	12	27	1.71
1783088--1783185	21	4.7	20	73	13	72	21	28	19	30	1.97
1783134--1783185	20	2.4	22	84	9	63	21	30	19	28	1.97
1783581--1783630	16	3.1	16	76	21	59	28	0	8	64	1.22
1785599--1785652	28	2.0	27	81	3	63	38	20	1	38	1.63
1790346--1790388	5	8.0	5	85	10	50	72	2	0	25	0.97
1790346--1790388	11	4.0	10	80	14	50	72	2	0	25	0.97
1790345--1790394	16	3.0	17	77	11	50	70	4	0	26	1.05
1791228--1791256	12	2.3	13	94	5	51	58	3	0	37	1.15
1792226--1792256	2	16.0	2	93	6	55	51	0	0	48	1.00
1792385--1792449	31	2.1	31	88	8	98	49	4	0	46	1.22
1805078--1805127	21	2.3	23	83	13	70	14	14	14	58	1.65
1815339--1815398	21	2.8	21	97	2	111	36	10	16	36	1.82
1816639--1816664	12	2.2	12	100	0	52	50	0	26	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1823828--1823864	18	2.1	18	94	0	65	40	16	18	24	1.90
1826746--1826770	10	2.5	10	100	0	50	20	8	20	52	1.71
1844171--1844221	23	2.3	22	83	6	59	23	15	29	31	1.95
1855143--1855174	12	2.8	11	90	9	55	87	0	12	0	0.54
1862223--1862272	24	2.1	24	85	7	66	60	12	2	26	1.43
1872659--1872708	24	2.1	24	85	7	66	60	12	2	26	1.43
1873603--1873801	54	3.7	54	85	5	260	38	17	12	31	1.86
1874060--1874118	22	2.7	22	83	0	82	27	13	13	45	1.81
1877305--1877364	23	2.7	23	86	2	86	30	20	21	28	1.98
1878857--1878886	16	1.9	16	93	6	53	70	0	6	23	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11