genome.fa.s9591.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009591.1 Hibiscus syriacus cultivar Beakdansim tig00116970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2451160

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  9  of  11  ( 1252 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1879956--1879988	12	2.6	13	90	4	50	12	57	21	9	1.62
1880017--1880097	13	5.8	15	68	18	50	51	0	0	48	1.00
1880258--1880289	11	2.9	11	90	0	55	18	56	25	0	1.42
1885946--1885986	18	2.3	18	91	4	66	63	2	4	29	1.28
1886522--1886677	58	2.7	58	83	3	197	33	17	6	42	1.74
1886500--1886681	59	3.1	58	81	7	208	34	19	6	40	1.76
1889112--1889230	63	1.9	63	83	0	157	16	31	19	31	1.94
1889112--1889250	63	2.2	63	80	2	145	16	33	20	29	1.95
1898915--1898947	16	2.2	15	89	10	50	27	0	0	72	0.85
1910579--1910635	20	2.8	20	69	10	53	52	3	8	35	1.50
1912290--1912349	30	2.0	30	96	3	113	28	11	20	40	1.87
1913196--1913253	19	3.1	19	71	11	57	37	0	3	58	1.15
1913196--1913288	37	2.4	37	82	10	98	36	3	3	56	1.31
1916863--1916926	2	32.0	2	100	0	128	50	0	0	50	1.00
1920113--1920145	14	2.4	14	90	10	50	33	21	6	39	1.78
1920221--1920289	23	3.0	23	72	8	68	26	24	24	24	2.00
1920501--1920569	30	2.3	30	92	0	111	33	23	4	39	1.74
1920954--1921092	63	2.2	64	81	8	151	25	17	20	35	1.94
1922532--1922624	38	2.4	37	87	3	123	30	27	19	22	1.98
1922825--1922877	21	2.7	19	80	8	54	43	20	1	33	1.63
1930308--1930360	21	2.7	19	80	8	54	43	20	1	33	1.63
1932428--1932486	9	5.9	10	72	20	52	54	1	1	42	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1938720--1938759	20	2.0	21	85	5	55	22	22	20	35	1.96
1938787--1938822	17	2.1	17	89	0	54	27	8	8	55	1.58
1939560--1939649	44	2.0	44	100	0	180	37	6	22	33	1.80
1940376--1940434	31	1.9	31	82	0	73	40	10	8	40	1.69
1940861--1941101	120	2.0	120	98	0	464	33	14	18	33	1.91
1941896--1941947	20	2.6	20	96	0	95	40	17	19	23	1.91
1941936--1942003	20	3.4	20	91	0	109	26	27	20	25	1.99
1941916--1942003	40	2.2	40	81	4	97	29	25	20	25	1.99
1942823--1942876	24	2.2	24	90	0	81	22	18	18	40	1.91
1945217--1945486	140	1.9	140	96	0	495	28	14	14	42	1.84
1945457--1945755	20	15.9	20	76	13	285	33	22	19	25	1.97
1945559--1945735	34	4.9	34	76	16	151	33	23	19	23	1.97
1945541--1945735	74	2.6	73	87	4	284	32	24	20	23	1.97
1945541--1945767	94	2.4	93	84	7	280	33	23	20	22	1.97
1945485--1945799	54	5.7	54	74	9	253	33	22	19	24	1.97
1945593--1945799	94	2.2	94	92	0	344	31	21	21	25	1.98
1945950--1946011	14	4.3	14	73	6	52	46	12	0	40	1.42
1947403--1947504	21	4.9	21	74	3	98	22	17	36	23	1.95
1947395--1947504	42	2.6	42	81	5	125	22	16	38	22	1.93
1947999--1948054	20	2.8	20	88	0	85	37	25	17	19	1.94
1948272--1948321	18	2.8	18	100	0	100	42	6	20	32	1.76
1950070--1950130	19	3.2	19	81	4	77	40	21	19	18	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1950034--1950130	20	4.9	19	81	5	77	46	20	17	15	1.84
1950723--1950836	20	5.7	20	87	0	147	27	21	24	27	1.99
1950723--1950918	40	4.8	40	78	5	162	29	20	24	26	1.99
1950723--1950860	60	2.3	60	79	2	152	26	21	23	28	1.99
1955778--1955803	3	8.7	3	100	0	52	69	0	0	30	0.89
1961003--1961126	63	2.0	63	95	0	221	33	8	24	33	1.86
1963556--1963583	14	2.0	14	100	0	56	14	14	14	57	1.66
1969027--1969595	53	10.5	55	81	8	251	32	10	16	40	1.82
1969027--1969235	110	1.9	111	85	6	289	30	11	14	44	1.80
1969069--1969318	110	2.3	109	81	5	265	34	10	13	41	1.79
1969137--1969651	53	9.6	53	83	2	521	32	10	17	39	1.83
1969778--1970075	144	2.1	145	84	1	393	29	25	14	30	1.95
1971090--1971280	64	3.0	64	79	13	196	30	23	18	27	1.98
1973073--1973146	32	2.3	32	90	0	121	32	8	5	54	1.53
1973127--1973163	19	1.9	19	89	10	58	37	5	0	56	1.22
1977180--1977238	29	2.1	28	84	9	75	38	3	3	54	1.34
1986364--1986388	13	1.9	13	100	0	50	68	8	0	24	1.16
1988528--1988570	18	2.4	18	80	0	50	48	0	4	46	1.22
1989549--1989586	5	7.6	5	100	0	76	42	18	18	21	1.90
1989596--1989641	18	2.5	19	86	6	60	36	2	0	60	1.09
1990934--1991146	111	1.9	111	86	0	300	47	4	7	39	1.53
1991048--1991278	128	1.8	128	91	1	383	46	4	12	36	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1991268--1991414	30	5.1	29	70	17	101	53	1	5	39	1.32
1993784--1993818	2	17.5	2	100	0	70	48	0	0	51	1.00
1994093--1994176	21	3.9	21	73	6	87	32	28	17	21	1.96
1994086--1994178	44	2.1	44	89	0	150	34	25	18	21	1.96
2010931--2011142	111	1.9	111	90	0	334	32	13	20	33	1.91
2015688--2015750	22	2.9	22	81	11	85	28	15	25	30	1.96
2018903--2018937	17	2.0	17	88	5	52	25	8	22	42	1.82
2026156--2026356	108	1.9	108	91	2	332	31	16	18	32	1.94
2033092--2033136	19	2.3	20	81	14	58	44	2	0	53	1.13
2034959--2034998	20	2.1	19	85	4	53	37	12	5	45	1.64
2041469--2041527	23	2.6	21	79	12	64	76	5	5	13	1.13
2041891--2041976	15	5.6	15	73	17	70	62	0	4	32	1.15
2041910--2041976	16	4.3	17	71	19	65	65	0	2	31	1.07
2043337--2043535	110	1.8	110	86	4	294	22	17	23	36	1.95
2044256--2044438	65	2.8	65	84	4	215	38	8	20	32	1.84
2044387--2044555	36	4.9	36	72	15	149	35	12	21	30	1.91
2044324--2044561	101	2.3	102	84	2	300	37	11	21	29	1.88
2044490--2044561	37	1.9	37	88	0	108	38	13	20	26	1.90
2046213--2046272	26	2.4	25	83	8	70	3	18	3	75	1.09
2046214--2046266	13	4.0	13	81	11	63	1	16	3	77	1.01
2046213--2046265	28	2.0	25	89	10	79	3	16	3	75	1.10
2049460--2049506	17	2.7	17	78	12	51	72	0	10	17	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2049532--2049636	36	2.9	36	77	16	108	69	3	3	22	1.21
2049625--2049704	16	5.1	16	71	17	60	68	2	2	26	1.14
2049773--2049850	18	4.2	19	69	23	58	69	0	5	25	1.09
2051172--2051257	42	2.0	43	93	2	147	29	23	15	32	1.95
2053378--2053489	59	1.9	58	82	8	138	31	22	5	41	1.76
2056310--2056399	46	2.0	45	91	8	148	32	12	15	40	1.84
2056884--2057700	6	140.2	6	87	11	1170	49	16	0	33	1.47
2058006--2058038	12	2.8	12	95	0	57	0	9	66	24	1.20
2058006--2058038	15	2.2	15	94	0	57	0	9	66	24	1.20
2060965--2061031	20	3.3	20	87	6	100	55	10	16	17	1.69
2060810--2061208	200	2.0	201	87	4	574	43	13	16	27	1.84
2062068--2062116	19	2.6	19	96	0	89	32	2	10	55	1.45
2062226--2062972	197	3.8	200	91	4	1145	36	14	18	30	1.91
2064457--2064496	12	3.3	12	85	0	53	40	7	32	20	1.80
2064457--2064496	18	2.2	18	86	0	53	40	7	32	20	1.80
2065425--2065463	15	2.6	14	84	11	51	17	0	23	58	1.38
2065620--2066217	181	3.3	182	90	5	955	36	13	16	33	1.89
2066460--2066532	23	3.2	23	90	0	110	35	5	20	38	1.76
2074166--2074330	68	2.4	69	97	2	316	1	23	18	56	1.48
2074796--2074914	3	39.0	3	84	3	148	59	2	0	37	1.11
2075046--2076067	76	13.4	76	95	0	1715	34	20	21	22	1.97
2079354--2079682	92	3.6	92	95	0	579	35	23	14	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2082244--2082269	2	13.0	2	100	0	52	50	0	0	50	1.00
2086562--2086612	18	2.9	17	75	16	50	72	1	0	25	0.95
2088305--2088469	68	2.4	69	97	2	316	1	23	18	56	1.48
2088936--2089060	3	41.0	3	87	3	169	60	1	0	37	1.06
2093914--2093942	10	3.0	10	95	5	51	79	0	20	0	0.74
2098481--2098512	14	2.3	14	94	0	55	15	9	28	46	1.77
2107295--2107382	23	3.8	23	78	14	108	29	26	26	18	1.98
2108711--2108736	12	2.2	12	100	0	52	50	15	0	34	1.45
2113930--2114017	23	3.8	23	74	14	90	30	25	25	19	1.98
2115041--2115108	34	2.0	35	94	2	120	22	29	29	19	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11