genome.fa.s9591.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009591.1 Hibiscus syriacus cultivar Beakdansim tig00116970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2451160

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  6  of  11  ( 1252 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1214371--1214521	42	3.6	41	89	5	207	35	23	19	21	1.96
1217449--1217499	23	2.2	23	100	0	102	45	13	17	23	1.84
1223941--1223993	21	2.7	19	85	8	72	22	24	30	22	1.99
1226966--1227260	151	2.0	150	96	3	549	39	13	11	35	1.82
1228864--1228908	22	2.0	22	100	0	90	33	35	4	26	1.77
1232041--1232069	2	15.0	2	92	7	51	48	0	0	51	1.00
1233940--1233998	30	2.0	30	83	6	75	35	18	6	38	1.78
1236401--1236455	20	2.8	20	85	0	65	29	20	27	23	1.99
1240792--1240848	26	2.4	24	78	16	64	64	0	1	33	1.04
1248629--1248698	19	3.7	19	98	0	131	32	17	27	22	1.96
1249223--1249435	101	2.1	102	94	1	383	24	14	24	36	1.93
1249455--1249498	23	1.9	23	90	0	70	22	31	22	22	1.98
1249454--1249516	23	2.8	23	75	15	69	22	26	23	26	2.00
1255621--1255748	64	2.0	67	89	7	201	34	19	18	27	1.95
1256197--1256401	103	2.0	103	98	0	392	25	13	25	35	1.93
1257098--1257304	75	2.8	76	86	5	271	20	23	31	24	1.98
1265652--1265855	75	2.7	74	86	3	266	21	25	30	22	1.98
1266332--1266542	88	2.4	89	84	6	275	20	21	22	34	1.97
1271275--1271312	19	2.1	19	90	5	60	47	5	0	47	1.24
1273195--1273242	10	4.7	10	78	2	51	68	0	0	31	0.90
1273185--1273243	19	2.8	20	87	10	75	66	0	0	33	0.92
1273295--1273347	20	2.6	21	78	3	63	45	0	7	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1278646--1278680	15	2.4	14	90	4	52	40	0	0	60	0.97
1282145--1282220	31	2.5	31	75	10	93	38	19	2	39	1.66
1292714--1292756	20	2.1	21	95	4	79	32	13	9	44	1.76
1296362--1296788	53	7.9	53	82	7	432	27	22	13	37	1.91
1296467--1296800	165	2.0	165	90	1	526	27	20	12	39	1.88
1296519--1296796	112	2.5	113	80	7	306	28	19	12	39	1.88
1300583--1300637	20	2.8	20	94	0	92	21	30	29	18	1.97
1306302--1306382	23	3.7	22	78	12	78	23	33	25	17	1.96
1306302--1306364	23	2.8	23	87	2	83	20	33	26	19	1.96
1311348--1311435	46	1.9	46	86	4	124	23	17	14	44	1.86
1311502--1312259	53	14.0	53	83	7	898	26	22	12	38	1.90
1311444--1312259	165	5.0	165	83	7	913	26	22	12	37	1.90
1311718--1311802	27	3.2	26	65	9	64	25	23	9	41	1.84
1311502--1312271	218	3.5	218	86	4	997	26	22	12	38	1.90
1311882--1312020	27	5.2	27	64	22	87	25	23	10	41	1.85
1312100--1312237	27	5.2	27	61	19	74	24	23	12	39	1.89
1312644--1312685	21	2.0	21	95	0	75	33	23	7	35	1.82
1313654--1314163	85	6.0	85	77	4	440	30	20	16	32	1.94
1313769--1314163	170	2.3	170	84	0	540	30	21	17	30	1.96
1315172--1315321	76	2.0	76	100	0	300	16	24	10	49	1.76
1320058--1320116	26	2.2	26	81	6	64	67	1	5	25	1.20
1320876--1320922	14	3.3	14	88	5	67	40	0	2	57	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1320876--1320922	7	6.6	7	83	11	60	40	0	2	57	1.11
1320875--1320922	15	3.3	15	83	13	64	39	0	2	58	1.10
1321397--1321442	12	3.8	12	88	2	65	39	0	0	60	0.97
1324915--1324940	4	6.5	4	100	0	52	23	0	0	76	0.78
1326174--1326212	21	1.9	20	84	5	51	69	20	2	7	1.26
1326677--1326729	25	2.0	27	82	7	65	7	26	35	30	1.84
1331766--1331890	15	8.6	15	72	14	66	81	0	14	3	0.86
1331810--1331885	1	76.0	1	81	0	89	90	1	6	1	0.55
1331811--1331885	23	3.2	23	90	3	114	90	1	6	1	0.55
1331810--1331887	11	6.8	11	87	12	113	89	1	7	1	0.59
1331810--1331887	34	2.2	36	93	6	135	89	1	7	1	0.59
1333012--1333102	3	31.0	3	93	4	159	32	0	1	65	1.00
1333226--1333286	28	2.1	29	90	3	97	29	22	18	29	1.97
1337781--1337820	17	2.3	18	87	12	57	67	0	7	25	1.16
1341949--1341999	22	2.4	22	83	3	59	50	1	7	39	1.42
1352575--1352609	18	1.9	18	100	0	70	11	5	40	42	1.65
1356588--1356627	2	20.0	2	100	0	80	50	0	0	50	1.00
1356817--1356853	14	2.7	15	88	12	53	43	0	0	56	0.99
1361947--1361997	27	1.9	26	88	4	75	31	47	0	21	1.51
1362861--1362909	22	2.2	23	88	3	73	18	4	10	67	1.36
1362900--1362957	15	4.0	15	72	22	61	18	3	0	77	0.91
1362908--1362972	29	2.3	27	84	12	78	21	4	0	73	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1362960--1363032	24	3.4	24	68	28	72	23	8	2	65	1.33
1362961--1363047	40	2.1	44	89	8	137	21	8	2	67	1.28
1367930--1368748	83	9.7	83	84	4	960	32	21	20	25	1.97
1367930--1368710	337	2.3	339	86	2	1099	32	21	20	25	1.97
1369096--1369128	17	1.9	17	100	0	66	36	36	0	27	1.57
1370005--1370055	21	2.5	20	87	3	66	19	3	9	66	1.36
1370046--1370102	15	3.9	15	72	23	59	19	3	0	77	0.92
1370048--1370169	43	2.9	41	77	11	115	20	7	0	71	1.15
1370113--1370191	39	1.9	43	85	10	112	22	7	1	68	1.22
1370056--1370645	320	1.9	310	88	4	887	29	10	8	51	1.65
1373881--1373924	19	2.2	21	88	8	65	20	9	9	61	1.53
1373881--1373924	20	2.2	21	88	8	65	20	9	9	61	1.53
1377182--1377231	26	1.9	26	84	8	66	56	2	4	38	1.30
1379123--1379558	105	4.1	105	93	0	710	22	17	25	33	1.96
1390639--1390663	10	2.5	10	100	0	50	76	8	0	16	1.02
1391614--1391651	20	1.9	20	88	0	58	5	39	36	18	1.73
1395371--1395516	77	1.9	78	81	9	183	42	9	4	43	1.56
1399311--1399359	24	2.0	24	84	0	62	53	16	6	24	1.66
1401824--1401918	18	5.6	18	80	12	119	13	20	48	17	1.81
1401818--1401918	49	2.1	49	92	3	168	14	19	47	17	1.82
1401842--1401914	31	2.4	31	88	0	119	13	20	47	17	1.81
1401818--1401896	13	6.3	13	75	16	62	16	20	45	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1404032--1404133	24	4.3	23	75	13	91	48	17	13	20	1.81
1404052--1404116	12	5.5	11	74	18	60	46	18	18	16	1.85
1406554--1406578	13	1.9	13	100	0	50	20	24	40	16	1.91
1406577--1406626	13	3.8	13	89	0	82	14	20	48	18	1.82
1406553--1406613	31	2.0	31	90	0	95	16	19	45	18	1.85
1406559--1406599	18	2.3	18	91	0	64	12	19	48	19	1.80
1407523--1407759	81	2.9	81	88	1	350	39	10	19	30	1.85
1407705--1407818	59	1.9	59	87	1	165	40	10	17	31	1.84
1407745--1408314	81	7.2	81	87	4	791	36	11	20	31	1.88
1410872--1411031	65	2.5	63	85	6	205	30	23	18	26	1.98
1419476--1419685	65	3.2	65	81	8	250	31	24	18	25	1.97
1423683--1424082	81	4.9	81	86	2	543	36	11	18	33	1.87
1423683--1424327	162	4.1	162	82	7	795	35	11	19	33	1.88
1424020--1424147	65	2.0	65	85	3	177	33	13	19	33	1.90
1423946--1424228	146	1.9	146	91	0	458	34	11	19	33	1.88
1424084--1424327	81	3.0	81	91	0	371	35	11	21	31	1.89
1424286--1424327	22	2.0	22	85	4	59	42	7	19	30	1.78
1427239--1427432	37	5.3	37	85	3	232	40	18	19	22	1.92
1427479--1427805	166	2.0	164	81	4	388	30	18	23	27	1.98
1427473--1427825	55	6.4	55	79	4	325	29	18	22	28	1.98
1427480--1427825	110	3.1	109	77	3	361	30	19	22	28	1.98
1430766--1430809	18	2.3	18	84	11	52	31	6	0	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1431320--1431374	25	2.2	24	81	12	67	40	18	9	32	1.82
1436618--1437185	290	2.0	291	97	0	1066	23	25	19	31	1.98
1439628--1439699	35	2.1	34	82	10	85	73	1	20	4	1.07
1439659--1439703	18	2.5	19	76	20	51	71	0	26	2	0.98
1439658--1439709	20	2.5	20	85	14	63	71	0	26	1	0.97
1443273--1443572	140	2.1	141	83	3	372	34	16	21	27	1.95
1443454--1443673	100	2.2	99	87	1	314	33	16	18	31	1.93
1443316--1443813	240	2.1	240	85	3	662	33	18	19	28	1.95
1443555--1443955	139	2.9	140	83	2	502	33	18	20	26	1.96
1444092--1444139	22	2.2	22	85	7	62	43	41	6	8	1.60

Tables:   1   2   3   4   5   6   7   8   9   10   11