genome.fa.s9591.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009591.1 Hibiscus syriacus cultivar Beakdansim tig00116970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2451160

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1252 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317134--317292	21	7.7	21	79	2	126	21	19	23	35	1.96
317281--317352	22	3.4	22	73	11	87	18	19	25	37	1.94
317302--317370	19	3.5	19	73	11	75	18	20	21	39	1.93
317281--317370	41	2.2	41	100	0	180	18	20	23	37	1.94
317158--317330	82	2.1	81	86	6	233	19	20	23	36	1.95
317370--317465	39	2.4	40	89	5	149	22	20	22	33	1.97
317237--317487	135	1.8	135	86	6	364	19	20	24	35	1.96
317457--317502	22	2.1	22	100	0	92	17	19	28	34	1.94
317371--317490	39	3.0	39	85	7	116	21	20	24	34	1.97
317603--317645	6	7.2	6	100	0	86	34	48	16	0	1.46
318245--318337	22	4.4	22	72	9	86	36	24	17	21	1.94
318302--318467	41	4.0	41	92	3	273	37	22	19	19	1.94
318329--318442	20	5.6	20	69	4	93	39	23	20	16	1.92
318326--318471	21	7.1	21	71	3	127	38	24	18	18	1.93
319093--319142	25	2.0	25	88	0	73	70	0	2	28	0.99
323892--323921	15	2.0	15	100	0	60	26	0	46	26	1.53
330681--330765	27	3.5	24	77	12	84	31	16	14	37	1.88
345529--345787	87	3.0	87	86	0	349	44	9	11	33	1.73
345720--345769	23	2.2	23	85	0	64	38	8	18	36	1.80
345827--346140	155	2.0	156	92	1	524	40	13	13	32	1.84
346286--346336	23	2.2	23	89	0	75	33	19	9	37	1.85
346260--346423	87	1.9	87	96	0	301	31	15	12	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
346373--346452	23	3.5	23	91	0	124	35	18	7	38	1.79
346658--347209	274	2.0	275	97	0	1034	43	9	5	42	1.58
347506--347579	23	3.2	23	92	0	112	33	20	10	35	1.87
347616--347672	23	2.5	23	91	0	87	35	21	5	38	1.76
347809--347867	23	2.6	23	94	0	100	38	6	8	45	1.61
349249--349441	75	2.6	75	82	4	212	51	15	6	26	1.68
349366--349394	12	2.5	12	94	5	51	62	10	0	27	1.28
351986--352011	11	2.4	11	100	0	52	50	15	7	26	1.71
356852--356876	10	2.5	10	100	0	50	20	0	0	80	0.72
358850--358875	11	2.4	11	100	0	52	57	7	0	34	1.27
359647--359723	36	2.1	36	90	4	120	32	14	37	15	1.88
368257--368296	6	6.7	6	100	0	80	32	35	15	17	1.91
370524--370572	21	2.3	21	79	6	55	42	0	6	51	1.27
382099--382173	4	18.8	4	91	0	69	37	24	13	25	1.91
382094--382173	32	2.5	32	97	0	151	38	23	12	25	1.90
384505--384556	2	26.0	2	92	0	86	48	1	0	50	1.12
385043--385088	2	23.0	2	100	0	92	50	0	0	50	1.00
393556--393600	20	2.4	19	92	7	74	33	17	24	24	1.96
403129--403171	20	2.2	20	86	0	59	30	20	16	32	1.95
403323--403353	6	5.2	6	92	0	53	0	16	45	38	1.47
403582--403641	22	2.7	23	84	2	77	35	6	20	38	1.79
408996--409049	22	2.4	24	87	9	78	35	7	20	37	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416080--416119	20	2.0	20	90	5	62	80	0	7	12	0.91
416080--416127	21	2.2	22	85	10	64	79	0	6	14	0.92
423136--423450	153	2.1	153	96	1	578	35	12	16	34	1.87
425931--425988	30	1.9	30	96	0	107	25	20	13	39	1.90
431884--431928	23	2.0	23	86	4	65	48	0	2	48	1.13
436742--436786	22	2.0	22	91	0	72	46	22	0	31	1.52
442604--442651	21	2.2	22	85	3	62	56	2	0	41	1.11
443159--443272	29	3.9	29	95	0	192	29	25	13	31	1.93
443993--444026	16	2.1	16	88	0	50	50	0	2	47	1.16
444068--444101	16	2.0	18	88	11	54	26	2	5	64	1.30
444571--444818	130	1.9	130	93	0	424	35	12	15	36	1.86
445215--445288	35	2.1	35	92	0	121	33	1	24	40	1.64
446257--446337	19	4.3	19	72	20	64	46	1	2	49	1.23
446288--446362	27	2.8	26	70	29	68	48	2	1	48	1.24
446348--446409	21	3.0	22	77	13	69	53	0	0	46	1.00
446397--446450	23	2.3	23	87	6	74	42	1	1	53	1.22
446373--446477	53	2.0	53	81	7	124	45	0	1	51	1.18
446378--446497	28	4.3	28	66	17	79	45	0	1	51	1.16
446435--446482	22	2.2	22	88	0	69	43	0	2	54	1.12
447922--447956	12	2.9	12	82	0	52	40	14	11	34	1.82
449142--449236	3	29.0	3	80	16	100	62	1	4	32	1.22
449145--449236	40	2.3	40	90	3	141	61	1	4	32	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449142--449236	43	2.3	40	87	8	129	62	1	4	32	1.22
450308--450350	21	2.0	21	86	0	59	41	0	2	55	1.12
454244--454286	19	2.4	19	88	7	63	46	0	0	53	1.00
454301--454345	23	2.0	23	86	8	65	40	0	0	60	0.97
454324--454397	30	2.6	30	91	6	118	35	5	0	59	1.20
454408--454469	30	2.0	31	87	3	90	41	6	0	51	1.27
460104--460180	27	3.0	26	76	18	81	49	2	0	48	1.15
460145--460253	31	3.7	31	72	18	83	48	0	1	48	1.18
460283--460334	23	2.3	23	86	0	68	46	1	0	51	1.12
461869--461895	9	3.0	9	100	0	54	0	55	0	44	0.99
473523--473559	2	18.5	2	94	0	65	48	0	2	48	1.15
474759--474799	21	1.9	22	90	5	66	21	14	19	43	1.87
474990--475038	20	2.5	20	89	0	80	28	20	24	26	1.99
477570--477616	23	2.2	23	85	11	64	38	0	12	48	1.41
482979--483042	29	2.2	29	97	0	119	43	14	28	14	1.83
487173--487288	5	23.2	5	98	0	133	60	9	0	30	1.28
487247--487305	15	4.0	15	91	2	66	69	0	0	30	0.89
502085--502199	57	2.0	57	100	0	230	29	17	13	39	1.88
509445--509491	18	2.8	17	77	6	51	55	2	2	40	1.24
509635--510223	225	2.6	224	93	4	1008	45	7	8	39	1.63
510184--510230	18	2.7	18	80	3	51	44	8	8	38	1.65
510481--510527	20	2.4	19	89	10	76	55	10	17	17	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510278--510740	180	2.6	181	87	3	646	42	14	16	26	1.87
510670--510712	20	2.3	19	88	11	63	51	11	16	20	1.75
512368--512824	230	2.0	226	97	2	862	29	15	23	31	1.95
513032--513060	15	1.9	15	100	0	58	20	6	55	17	1.65
513142--513193	20	2.5	21	81	3	70	40	13	32	13	1.83
513239--513304	33	2.0	33	90	0	105	28	0	48	22	1.51
515047--515094	19	2.6	19	93	3	80	31	2	10	56	1.45
515212--516732	191	7.9	196	93	4	2431	37	15	15	31	1.89
515212--516732	582	2.6	586	92	4	2528	37	15	15	31	1.89
518077--518180	12	8.4	12	84	6	100	34	7	34	23	1.83
518074--518135	18	3.4	18	79	0	79	37	9	35	17	1.83
518074--518180	6	17.3	6	77	5	61	35	7	34	22	1.82
518089--518181	3	31.0	3	78	0	96	34	6	34	24	1.81
519287--519325	20	2.0	20	89	0	60	28	12	7	51	1.67
519623--520099	178	2.7	179	90	6	763	34	14	16	34	1.90
522560--522624	25	2.6	25	80	0	85	35	9	13	41	1.77
522970--523032	23	2.7	23	90	4	92	34	4	20	39	1.74
522970--523042	23	3.2	23	82	7	85	32	4	21	41	1.72
523465--523501	18	2.1	18	89	0	56	32	5	10	51	1.60
523457--523503	24	2.0	24	86	0	67	34	4	14	46	1.64
523775--523840	34	1.9	34	96	0	123	48	18	16	16	1.82
524257--524329	23	3.2	23	88	0	101	34	4	21	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524931--524959	14	2.0	15	93	6	51	41	3	6	48	1.47
529923--530001	30	2.8	28	75	7	86	53	27	15	3	1.59
529923--530013	33	3.0	33	74	19	99	51	28	14	5	1.64
535316--535374	21	2.8	21	82	14	68	8	15	5	71	1.28
540602--540679	32	2.5	32	85	4	106	38	10	12	38	1.78
544736--544764	3	9.7	3	100	0	58	68	0	0	31	0.89
551622--551661	16	2.4	17	87	8	64	45	20	15	20	1.86
558409--558445	18	2.0	19	89	5	58	24	21	10	43	1.84
569242--569304	18	3.4	18	77	12	65	52	0	6	41	1.27
569295--569338	17	2.6	17	82	10	56	63	0	0	36	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11