genome.fa.s9591.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009591.1 Hibiscus syriacus cultivar Beakdansim tig00116970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2451160

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  3  of  11  ( 1252 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
569288--569333	23	2.0	23	83	8	58	65	0	0	34	0.93
569343--569386	20	2.1	21	83	4	54	59	6	0	34	1.24
569723--569766	22	2.0	23	86	13	65	47	2	4	45	1.35
570291--570340	23	2.2	23	88	0	73	66	14	6	14	1.43
593661--593766	31	3.5	30	79	5	106	44	3	3	48	1.38
593677--593766	29	3.0	29	83	3	108	44	3	4	47	1.39
594195--594243	22	2.3	21	85	3	62	67	0	4	28	1.09
594209--594287	30	2.5	31	78	13	83	70	1	3	24	1.11
594214--594317	32	3.7	26	75	19	86	70	0	3	25	1.10
594195--594341	79	1.9	78	84	9	201	69	1	3	25	1.12
594229--594335	28	4.2	25	72	20	78	71	1	3	23	1.13
594211--594398	43	4.5	42	72	16	142	68	2	2	27	1.13
594214--594425	83	2.6	82	76	13	184	67	1	2	28	1.13
594209--594388	38	4.6	39	72	12	138	69	2	2	26	1.12
594933--595043	37	3.0	37	89	1	161	34	10	14	40	1.81
595539--595783	84	2.9	83	80	6	237	25	17	23	33	1.96
596433--597025	102	5.8	102	96	0	1069	36	12	19	30	1.89
596960--597089	64	2.0	64	92	2	217	36	13	16	32	1.89
596858--597191	166	2.0	166	94	0	578	37	12	18	31	1.88
596701--597709	268	3.8	265	77	11	1074	37	12	18	31	1.88
597036--597222	37	5.3	36	69	18	117	40	12	18	28	1.87
596970--597298	102	3.2	101	88	5	459	38	12	17	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597238--597312	37	2.0	37	86	0	105	42	12	16	29	1.83
597455--597597	65	2.2	66	93	1	243	37	11	20	31	1.88
597482--597719	102	2.3	102	90	0	368	39	12	18	28	1.87
597548--597633	37	2.4	37	84	2	111	43	12	20	23	1.86
597728--597901	73	2.3	73	86	4	224	40	14	17	27	1.89
598185--598209	12	2.1	12	100	0	50	28	0	24	48	1.52
599009--599197	95	2.0	95	87	0	270	31	19	16	32	1.94
601993--602111	23	5.3	23	83	2	152	28	21	24	25	1.99
602001--602111	46	2.4	46	93	0	186	26	22	26	25	2.00
602123--602443	103	3.1	103	95	0	597	37	22	13	27	1.91
603878--603921	21	2.1	21	86	0	61	15	27	27	29	1.96
607612--607730	23	5.3	23	78	2	125	28	21	25	25	1.99
607620--607730	46	2.4	46	92	3	179	26	21	27	25	2.00
607742--608062	103	3.1	103	95	0	588	37	22	13	27	1.91
609501--609544	21	2.1	21	86	0	61	15	27	27	29	1.96
610955--610988	15	2.2	16	89	5	52	70	0	17	11	1.16
610998--611043	17	2.8	17	80	9	51	78	0	6	15	0.95
611008--611215	46	4.3	47	77	13	160	68	2	3	25	1.18
611059--611140	35	2.4	34	82	8	96	69	2	2	25	1.13
612499--612544	19	2.5	19	85	3	67	43	4	13	39	1.63
615181--615254	2	37.5	2	91	2	123	52	0	0	47	1.00
615884--615918	2	18.0	2	94	5	63	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
616013--616105	23	4.2	22	74	12	82	53	1	4	40	1.27
616065--616105	15	2.5	17	76	15	50	56	0	7	36	1.27
616099--616129	2	15.5	2	100	0	62	51	0	0	48	1.00
616319--616376	31	1.9	30	82	10	73	41	3	17	37	1.66
620100--620163	30	2.1	30	100	0	128	10	53	6	29	1.60
620262--620287	13	2.0	13	100	0	52	46	23	7	23	1.78
630062--630127	12	5.5	11	76	18	53	54	0	1	43	1.09
630060--630129	15	4.4	16	72	21	58	54	0	1	44	1.09
631943--632066	6	20.0	6	73	12	63	41	3	41	13	1.61
631942--632063	24	4.9	24	73	10	111	40	3	42	13	1.61
631943--632066	18	7.0	18	71	9	85	41	3	41	13	1.61
645492--645592	17	5.6	18	69	21	68	28	1	2	66	1.17
645843--645889	17	2.7	17	96	3	85	12	6	4	76	1.12
645888--645933	13	3.3	15	77	20	55	17	8	2	71	1.21
645955--646007	12	4.5	12	81	13	65	15	18	0	66	1.26
658775--658887	55	2.1	55	100	0	226	25	17	18	38	1.93
659611--659684	37	2.0	36	84	7	96	45	0	4	50	1.20
659841--659896	20	2.8	20	86	0	76	23	19	10	46	1.81
659408--661232	660	2.7	654	86	5	2413	36	13	9	40	1.77
665958--666018	31	1.9	32	90	3	97	34	14	1	49	1.54
667117--667299	93	2.0	93	90	0	285	36	10	12	40	1.77
667530--667572	2	21.5	2	100	0	86	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
670604--670672	23	3.0	22	76	4	66	31	23	23	21	1.98
671319--671457	63	2.2	64	85	3	183	25	15	23	35	1.94
672351--672411	20	3.3	20	66	29	62	21	27	34	16	1.95
672354--672424	35	2.0	36	97	2	135	19	30	29	19	1.97
673049--673140	38	2.4	38	88	0	139	26	22	27	23	2.00
673057--673125	21	3.5	21	70	22	67	24	27	26	21	1.99
679875--679939	17	3.6	17	69	28	53	21	24	29	24	1.99
679846--679937	38	2.4	38	90	0	148	25	23	27	23	2.00
681132--681188	29	1.9	29	89	10	89	36	12	3	47	1.58
682613--682733	44	2.8	44	89	0	197	69	6	3	20	1.26
683119--683235	21	5.6	21	78	6	130	22	13	34	29	1.92
687569--687638	34	2.0	35	94	2	124	51	14	8	25	1.70
690943--691017	38	2.0	37	82	10	91	46	4	1	48	1.29
691995--692050	15	3.7	15	73	20	53	48	1	3	46	1.30
692301--692357	7	8.1	7	98	0	96	0	61	0	38	0.96
693538--693631	31	3.0	31	83	9	120	23	18	20	38	1.93
694394--694456	22	2.9	22	78	0	81	22	12	15	49	1.79
695244--695306	33	1.9	33	93	0	108	47	4	11	36	1.60
713527--713556	15	1.9	16	93	6	53	43	0	10	46	1.37
719151--719202	21	2.5	21	90	0	86	46	11	9	32	1.73
719338--719719	189	2.0	189	98	0	737	31	11	15	41	1.83
720025--720079	20	2.8	20	77	5	58	38	14	9	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
721296--722637	670	2.0	674	81	5	1602	23	17	18	40	1.91
722968--722995	2	14.0	2	100	0	56	50	0	0	50	1.00
727179--727239	32	1.9	32	89	0	95	36	22	14	26	1.93
729803--729854	25	2.1	25	85	3	70	51	9	5	32	1.58
736341--736393	21	2.5	21	78	0	61	20	26	16	35	1.94
736402--736448	20	2.3	20	92	0	76	31	27	19	21	1.97
737290--737343	24	2.2	24	93	0	90	20	18	20	40	1.91
739764--739872	20	5.5	19	85	12	148	34	24	22	18	1.96
739868--739939	33	2.1	34	87	2	101	47	18	20	13	1.82
739953--740023	33	2.1	34	84	7	92	18	21	16	43	1.88
742151--742259	20	5.4	20	86	2	130	37	21	19	22	1.94
742304--742480	20	9.5	20	78	16	175	17	18	22	41	1.90
742283--742480	40	5.5	37	75	13	173	16	19	21	42	1.89
742276--742477	107	1.9	107	93	0	350	16	19	20	43	1.89
742605--742994	194	2.0	196	98	1	766	35	22	14	27	1.93
744551--744606	20	2.8	20	86	0	76	50	25	16	8	1.74
744959--745034	22	3.5	22	87	0	98	19	17	39	23	1.92
745221--745334	20	5.7	20	77	2	129	21	20	19	38	1.93
745228--745330	41	2.5	41	80	1	118	22	19	17	40	1.91
745331--745371	21	2.0	21	95	0	73	41	17	24	17	1.89
748440--748472	17	1.9	17	100	0	66	42	6	12	39	1.67
753990--754057	30	2.2	31	94	2	120	35	16	14	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
759124--759151	2	14.0	2	100	0	56	50	0	0	50	1.00
772716--772755	20	2.0	20	85	9	55	37	0	0	62	0.95
777718--777765	22	2.2	22	85	14	64	43	0	0	56	0.99
777769--777818	23	2.2	23	85	0	64	42	2	2	54	1.23
777918--777958	14	2.8	15	88	7	66	58	0	2	39	1.11
781936--782013	35	2.2	35	88	0	111	30	1	23	44	1.61
783337--783412	35	2.2	35	82	0	89	40	21	1	36	1.61
789679--789718	21	1.9	21	89	0	62	25	40	25	10	1.86
791669--791719	9	6.2	8	76	19	52	13	0	27	58	1.36
791671--791714	17	2.6	17	85	7	63	13	0	29	56	1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11