genome.fa.s9605.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009605.1 Hibiscus syriacus cultivar Beakdansim tig00116989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9158330

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   

This is table  2  of  35  ( 4090 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
215643--215682	21	1.9	21	94	0	71	22	22	22	32	1.98
216853--216904	25	2.1	25	100	0	104	25	25	19	30	1.98
218723--218761	20	1.9	21	94	5	71	23	23	20	33	1.97
220071--220165	37	2.6	36	78	17	106	45	14	5	34	1.68
220130--220242	59	2.0	56	94	5	199	36	15	5	42	1.70
220224--220360	39	3.5	39	78	1	157	38	13	7	40	1.72
220315--220552	91	2.6	89	80	8	230	41	11	7	39	1.71
220592--220677	26	3.1	28	68	31	78	47	11	1	39	1.47
220590--220736	56	2.6	55	87	5	206	50	10	2	37	1.48
220600--220958	57	6.4	56	79	11	224	45	11	6	35	1.66
220601--220979	58	6.7	57	79	12	313	45	12	6	35	1.68
221128--221241	44	2.6	43	83	6	140	42	14	9	33	1.79
223753--224146	197	2.0	197	100	0	788	25	15	26	32	1.96
225287--225341	23	2.5	23	88	8	80	7	14	20	58	1.60
225291--225341	10	4.8	10	75	20	50	7	15	19	56	1.63
225965--226113	77	1.9	77	97	0	280	34	10	12	42	1.78
226910--226949	2	20.0	2	100	0	80	50	0	0	50	1.00
229527--229563	2	18.5	2	100	0	74	51	0	0	48	1.00
230031--230107	35	2.2	35	97	0	145	25	20	10	42	1.84
230853--231289	106	4.1	106	91	0	667	21	17	24	36	1.95
231903--231995	36	2.6	36	79	6	98	43	13	21	21	1.87
232134--232210	36	2.1	38	90	4	122	37	15	20	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
232690--232724	17	2.0	18	88	5	54	42	31	8	17	1.79
238133--238161	15	1.9	15	100	0	58	55	0	0	44	0.99
238136--238161	13	2.0	13	100	0	52	53	0	0	46	1.00
239029--239104	35	2.2	35	97	2	145	26	19	10	43	1.83
239833--239859	12	2.2	12	100	0	54	74	7	0	18	1.05
241552--241584	16	2.0	17	94	5	59	42	6	3	48	1.43
242884--242978	3	32.7	3	85	6	97	62	5	2	30	1.29
242917--242978	20	3.0	20	85	2	88	61	0	3	35	1.12
243235--243288	20	2.7	20	88	0	81	29	22	20	27	1.98
243106--243387	119	2.4	119	91	0	456	32	19	16	31	1.94
243255--243684	99	4.3	99	94	0	734	30	19	16	33	1.93
250902--250994	46	2.0	47	83	10	120	32	20	10	36	1.87
253175--253208	16	2.1	17	88	5	52	47	5	2	44	1.42
253320--253357	19	2.1	19	85	9	53	63	0	2	34	1.09
253817--253850	12	2.8	12	90	0	50	17	35	14	32	1.91
254562--254604	3	14.7	3	81	13	54	60	2	2	34	1.22
255971--255995	12	2.1	12	100	0	50	16	0	8	76	1.02
255967--256012	17	2.8	16	86	3	56	19	2	4	73	1.10
256327--256377	22	2.4	21	76	3	57	17	1	3	76	1.03
256407--256499	47	2.0	47	83	12	120	15	4	5	75	1.14
259133--259392	95	2.7	94	86	5	308	31	18	16	32	1.94
260514--262085	84	18.7	84	85	0	1791	33	23	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260514--262098	252	6.3	252	86	1	2028	33	23	19	23	1.97
263955--264017	29	2.2	29	81	13	69	17	7	1	73	1.16
264113--264192	17	4.6	17	74	11	56	18	1	7	72	1.15
264319--264356	17	2.3	17	90	4	60	10	2	0	86	0.66
264319--264356	8	4.6	8	87	6	58	10	2	0	86	0.66
265194--265224	16	1.9	16	100	0	62	25	6	19	48	1.72
270615--270858	37	6.4	37	73	19	96	43	5	7	43	1.56
270688--270964	39	7.0	38	78	12	152	42	3	7	45	1.49
270718--270983	39	6.8	38	80	12	276	40	3	8	47	1.49
270967--271027	22	2.7	24	82	12	76	29	1	1	67	1.10
276506--276539	16	2.1	16	88	0	50	20	2	0	76	0.92
276484--276583	26	3.9	24	77	13	85	21	4	2	73	1.10
285693--285741	20	2.5	20	75	0	53	32	10	4	53	1.54
290092--290207	42	2.8	42	89	0	169	18	16	17	48	1.82
290404--290550	54	2.7	55	78	13	153	48	0	1	48	1.14
290521--290558	11	3.5	11	82	10	51	47	0	0	52	1.00
290553--290597	23	2.0	23	86	0	63	53	2	2	42	1.25
290639--290696	29	2.0	30	86	10	84	55	3	0	41	1.17
290690--290763	19	3.9	19	74	13	64	51	1	1	45	1.18
290917--290955	20	2.0	20	84	0	51	33	17	7	41	1.79
290930--291001	30	2.4	30	95	2	128	33	20	4	41	1.72
290929--291001	15	4.9	15	79	3	94	32	20	5	41	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293817--293878	20	3.2	20	72	23	60	20	1	1	75	0.97
293817--293877	11	6.1	10	72	12	54	19	1	1	77	0.95
295356--295381	2	13.0	2	100	0	52	50	0	0	50	1.00
299244--299282	14	2.8	14	92	0	69	43	15	5	35	1.69
300740--300808	18	3.8	18	79	9	59	71	0	27	1	0.95
300772--300905	5	26.8	5	79	17	145	79	0	20	0	0.79
300788--300906	22	5.2	22	77	22	122	79	0	19	0	0.78
300766--300905	55	2.6	53	86	9	196	79	0	20	0	0.78
300901--300934	9	3.9	9	88	3	52	64	0	35	0	0.94
302664--303190	42	13.0	40	77	10	434	25	18	16	38	1.92
302662--303190	80	6.5	80	80	10	499	25	18	16	39	1.92
303836--304443	134	4.5	134	86	1	768	29	17	18	34	1.94
303907--304471	134	4.2	134	87	1	785	28	17	19	34	1.95
303907--304436	270	2.0	268	89	1	819	28	17	19	34	1.95
305471--305498	2	14.0	2	100	0	56	50	0	0	50	1.00
309949--310001	2	26.5	2	100	0	106	50	0	0	49	1.00
310646--310753	37	2.9	37	95	0	198	41	12	10	35	1.77
311117--311170	21	2.6	21	82	11	58	18	0	1	79	0.82
311142--311169	8	3.5	8	100	0	56	10	0	0	89	0.49
311553--311577	11	2.3	11	100	0	50	16	0	8	76	1.02
314753--314822	12	5.3	12	75	18	52	75	5	15	2	1.11
314753--314805	12	4.2	13	83	9	56	75	3	16	3	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315898--315969	32	2.2	32	82	0	90	31	13	22	31	1.93
316493--317008	221	2.3	221	90	0	811	33	22	18	25	1.97
316493--317008	110	4.7	110	91	0	816	33	22	18	25	1.97
318051--318199	37	4.0	37	95	0	271	40	13	12	33	1.82
318438--318484	22	2.1	22	100	0	94	34	19	12	34	1.89
318900--318937	3	12.7	3	94	0	67	31	0	2	65	1.06
321096--321121	3	8.7	3	100	0	52	30	0	0	69	0.89
321869--322362	102	4.5	107	71	19	304	31	2	12	53	1.53
324892--324949	2	29.0	2	100	0	116	50	0	0	50	1.00
327478--327524	21	2.2	21	84	0	67	21	23	19	36	1.95
327520--327566	20	2.3	20	96	0	85	36	25	19	19	1.95
327657--327706	20	2.5	20	93	0	82	28	20	14	38	1.91
328663--328716	24	2.2	24	93	0	90	20	18	20	40	1.91
331014--331049	18	2.0	18	94	0	63	55	22	2	19	1.56
331223--331284	29	2.1	29	84	0	79	29	16	27	27	1.97
332814--332927	21	5.5	22	68	14	62	26	19	34	20	1.96
332814--332931	41	2.8	42	83	2	139	27	18	33	20	1.96
332827--332929	21	5.0	21	70	8	77	28	17	33	20	1.95
335410--335466	22	2.6	22	85	0	78	17	19	42	21	1.90
335640--335685	21	2.2	21	88	0	65	36	19	23	19	1.95
335891--335938	25	2.0	25	91	4	80	39	4	2	54	1.32
336221--336280	25	2.4	25	97	0	111	35	8	1	55	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
341815--342048	117	2.0	117	100	0	468	39	12	6	41	1.70
342474--342643	55	3.1	55	91	0	279	35	19	11	34	1.87
349351--349616	55	4.9	55	91	0	417	34	16	12	36	1.86
355873--355913	2	20.0	2	95	5	73	48	2	0	48	1.14
364888--364971	32	2.6	31	80	9	89	32	15	20	32	1.94
366142--366183	22	1.9	22	85	0	57	42	0	19	38	1.51
366206--366247	2	21.0	2	90	0	66	47	2	2	47	1.28
366269--366310	3	13.7	3	87	9	59	35	0	2	61	1.09
367172--367205	2	17.5	2	93	6	61	50	0	0	50	1.00
367240--367299	27	2.1	29	87	6	88	43	3	5	48	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35