Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009605.1 Hibiscus syriacus cultivar Beakdansim tig00116989_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9158330

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   

This is table  35  of  35  ( 4090 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9136146--9136317
90
1.9
89
93
1
299
37
9
6
45
1.63
9154826--9154850
3
8.3
3
100
0
50
64
0
36
0
0.94
9155259--9155301
20
2.2
20
83
8
52
2
18
0
79
0.85
9155866--9155958
18
5.1
18
76
13
82
35
3
2
59
1.26
9155865--9155941
38
2.0
39
87
2
111
36
2
2
58
1.26
9155865--9155922
20
3.0
20
78
14
68
37
0
3
58
1.15
9155913--9155959
19
2.5
19
93
3
78
31
6
0
61
1.21
9155938--9155974
13
2.7
14
84
15
51
37
2
0
59
1.12
9156527--9156588
23
2.7
23
90
2
90
35
29
14
20
1.93
9156676--9156720
20
2.2
20
88
0
63
57
13
11
17
1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35

The End!