genome.fa.s9611.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009611.1 Hibiscus syriacus cultivar Beakdansim tig00116997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6671611

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  1  of  27  ( 3214 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598--636	14	3.1	14	72	27	50	51	25	15	7	1.70
588--636	24	2.0	24	96	0	89	53	22	14	10	1.71
3430--3504	30	2.5	30	97	2	141	50	8	2	38	1.46
4944--5007	2	34.0	2	77	22	68	48	0	3	48	1.17
13051--13122	24	2.9	24	75	20	60	45	4	9	40	1.56
15944--15993	23	2.2	23	82	3	57	22	12	12	54	1.69
22390--22444	17	3.4	17	72	7	51	63	5	3	27	1.33
23905--23967	26	2.4	26	81	0	63	44	20	4	30	1.72
25043--25113	20	3.5	20	100	0	142	19	23	11	45	1.83
32155--32189	18	1.9	18	94	0	61	28	11	11	48	1.74
33014--33089	29	2.6	29	85	4	91	36	10	11	40	1.76
50440--50470	2	15.5	2	93	0	53	48	0	3	48	1.17
54956--54991	18	1.9	18	88	5	54	55	2	2	38	1.29
55526--55676	21	7.2	21	80	12	161	31	23	21	23	1.99
55691--55734	21	2.1	21	100	0	88	18	18	34	29	1.94
55812--55843	6	5.3	6	100	0	64	34	46	18	0	1.49
56206--56320	21	5.6	21	69	11	60	33	26	18	21	1.96
56308--56479	20	8.6	20	87	2	238	32	27	19	19	1.97
56860--56930	33	2.2	33	94	0	124	11	23	16	47	1.79
57010--57083	21	3.5	20	80	8	94	47	17	20	14	1.83
57071--57127	14	3.7	14	70	20	51	45	22	22	8	1.80
57064--57143	33	2.4	33	93	0	133	48	22	20	8	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57169--57233	21	3.1	21	82	4	96	10	26	15	47	1.78
57168--57231	20	3.2	20	82	4	92	12	25	15	46	1.81
58917--59231	93	3.4	93	99	0	614	22	13	19	45	1.85
59347--59403	14	3.7	14	72	20	51	43	24	22	8	1.81
59361--59452	19	5.4	18	72	24	65	46	28	17	7	1.75
59329--59452	33	3.7	33	91	1	185	45	27	17	8	1.78
59378--59436	14	3.9	14	76	20	64	47	28	16	6	1.72
59448--59620	19	9.6	19	76	12	159	10	20	23	45	1.81
59470--59526	14	3.7	14	75	20	51	10	22	22	43	1.84
59448--59620	33	4.8	38	80	8	168	10	20	23	45	1.81
61536--61571	14	2.6	14	95	0	63	33	0	22	44	1.53
61678--61776	20	5.4	19	84	12	136	45	17	23	14	1.84
61678--61794	54	2.2	53	96	3	218	43	17	24	13	1.86
61828--61882	14	3.6	14	73	21	56	10	23	20	45	1.82
61811--61901	33	2.7	33	98	1	173	13	24	17	45	1.84
61791--61998	86	2.3	89	91	5	325	14	22	16	46	1.83
61842--62040	53	3.8	51	84	11	262	14	21	18	46	1.84
61791--62026	72	3.4	72	79	12	260	14	21	17	46	1.83
61894--62040	33	4.2	33	78	13	170	14	20	19	46	1.84
64325--64349	12	2.1	12	100	0	50	0	28	0	72	0.86
64524--64570	24	2.0	24	87	8	69	38	21	14	25	1.92
65263--65490	20	11.4	20	85	2	235	19	17	25	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66059--66195	21	6.6	21	84	5	170	30	27	18	23	1.98
66204--66382	21	8.6	21	81	7	186	24	22	22	30	1.99
66180--66383	104	2.0	103	92	0	336	25	22	21	30	1.98
72475--72541	2	33.5	2	100	0	134	0	49	0	50	1.00
72541--72573	2	16.5	2	100	0	66	48	0	0	51	1.00
76338--76374	6	6.2	6	100	0	74	16	0	0	83	0.64
78681--78758	32	2.5	32	85	2	95	47	12	11	28	1.76
87929--87986	30	1.9	31	89	3	91	53	3	17	25	1.59
87929--87997	30	2.3	30	82	7	86	52	4	21	21	1.64
88308--88346	19	2.1	18	85	4	51	53	2	2	41	1.28
104777--105280	251	2.0	251	98	0	963	42	16	18	22	1.88
106985--107100	57	2.0	57	100	0	232	35	20	12	31	1.89
111800--111906	46	2.3	46	98	0	205	29	17	16	35	1.93
113015--113105	31	2.9	31	87	6	139	31	8	24	35	1.86
119199--119290	19	4.7	19	84	8	105	34	23	10	30	1.89
119100--119291	20	9.6	20	81	7	178	40	23	11	23	1.88
119447--119484	16	2.5	15	84	12	51	28	5	0	65	1.14
120200--120253	24	2.2	24	93	0	90	20	18	20	40	1.91
126635--126672	20	1.9	20	88	0	58	47	18	18	15	1.83
126697--126764	20	3.4	20	83	6	93	8	17	22	51	1.72
127274--127335	20	3.1	20	92	0	97	19	11	25	43	1.84
127329--127380	20	2.5	20	87	9	70	26	17	19	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128633--128996	181	2.0	181	85	2	498	39	13	18	29	1.88
129378--129422	21	2.1	21	88	8	65	31	11	6	51	1.63
131687--131717	2	15.5	2	100	0	62	51	0	0	48	1.00
137497--139160	6	283.2	6	92	7	2839	32	0	16	50	1.47
142295--142452	21	7.8	20	70	7	77	39	25	16	18	1.91
142439--142665	20	11.5	20	80	9	198	36	25	17	20	1.94
142439--142665	60	3.8	60	81	4	237	36	25	17	20	1.94
143345--143391	24	2.0	24	87	8	69	25	14	21	38	1.92
145845--145940	18	5.4	19	83	14	125	14	22	17	44	1.85
145826--145940	53	2.2	50	95	4	203	13	24	18	43	1.86
145999--146159	33	4.7	33	76	15	157	44	17	22	14	1.85
145999--146165	52	3.2	52	93	2	291	43	17	23	15	1.87
146172--146271	19	5.5	19	83	12	138	16	23	16	45	1.85
146155--146271	53	2.2	53	93	1	200	15	24	16	43	1.86
146376--146412	14	2.6	14	91	0	65	45	21	0	32	1.52
148343--148435	33	2.8	33	93	0	159	47	21	19	11	1.81
148306--148440	19	7.6	19	75	16	119	45	23	18	11	1.82
148436--148563	19	7.3	19	73	19	116	8	17	28	45	1.78
148436--148526	33	2.8	33	91	5	141	7	18	28	45	1.77
148605--148979	92	4.1	93	94	4	674	45	18	12	22	1.83
148605--148979	181	2.0	184	94	4	670	45	18	12	22	1.83
150673--150760	14	5.6	14	73	23	77	43	22	25	9	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150665--150765	33	3.1	33	92	0	175	43	20	25	9	1.83
150672--150753	19	4.9	18	73	21	72	43	21	25	8	1.81
150777--150830	14	3.5	14	73	22	54	7	25	24	42	1.80
150761--150841	33	2.5	33	93	0	135	7	23	22	46	1.76
150817--150872	21	2.7	21	84	10	71	10	28	17	42	1.83
150818--150893	20	3.8	20	81	8	91	10	26	17	46	1.80
150971--151041	33	2.2	33	86	0	97	49	16	22	11	1.78
151414--151607	20	9.6	20	82	5	221	19	19	25	35	1.95
151414--151607	60	3.2	60	83	0	253	19	19	25	35	1.95
151555--151649	20	4.7	20	79	5	102	16	17	24	41	1.90
151594--151717	21	6.0	21	72	5	108	25	16	23	34	1.95
151580--151691	41	2.7	41	91	6	174	23	16	21	38	1.93
162635--163036	198	2.0	201	98	1	783	37	16	15	29	1.91
165349--165391	12	3.6	12	87	0	59	23	23	9	44	1.82
165853--165928	31	2.5	31	77	0	89	27	9	14	48	1.74
166322--166427	39	2.7	39	75	18	112	36	16	2	44	1.62
166680--166793	25	4.4	26	73	23	80	42	1	0	55	1.10
166690--166793	26	3.9	26	70	20	81	42	1	0	55	1.10
169672--169697	6	4.3	6	100	0	52	34	0	15	50	1.45
174977--175079	53	1.9	53	98	0	197	30	12	16	40	1.85
185661--185687	2	13.5	2	100	0	54	0	48	0	51	1.00
188661--188883	110	2.0	110	93	1	385	34	7	23	34	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189403--189460	24	2.4	24	78	18	66	62	0	0	37	0.96
192835--192881	22	2.2	21	85	11	60	38	0	0	61	0.96
204106--204163	28	2.1	28	100	0	116	37	8	18	34	1.82
216097--216147	24	2.1	24	100	0	102	37	11	23	27	1.90
217171--217261	40	2.3	40	90	0	137	27	19	17	35	1.95
224209--224337	2	66.0	2	82	7	158	51	1	0	46	1.10
229409--229437	15	1.9	15	100	0	58	27	34	17	20	1.95
238626--238706	2	41.5	2	95	4	148	48	0	0	51	1.00
242537--243798	106	11.9	106	92	0	2037	33	24	18	23	1.96
244015--244399	84	4.7	83	81	3	402	30	25	19	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27