genome.fa.s9611.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009611.1 Hibiscus syriacus cultivar Beakdansim tig00116997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6671611

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  25  of  27  ( 3214 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6185430--6185471	14	3.1	14	79	3	50	50	0	2	47	1.14
6186634--6186666	16	2.1	16	100	0	66	24	30	21	24	1.99
6191518--6191567	16	3.1	16	94	0	91	26	32	22	20	1.98
6195731--6195824	43	2.2	42	83	5	118	48	3	17	30	1.62
6209521--6209582	31	2.0	31	100	0	124	19	29	3	48	1.64
6209864--6209888	12	2.1	12	100	0	50	80	0	8	12	0.92
6214326--6214360	2	17.5	2	100	0	70	51	0	0	48	1.00
6216517--6216664	75	2.0	74	98	1	287	22	4	33	39	1.73
6223950--6224035	3	28.3	3	85	11	104	66	0	3	30	1.08
6223950--6224035	28	2.9	30	88	10	115	66	0	3	30	1.08
6223958--6224035	22	3.6	22	86	8	81	66	0	3	29	1.09
6230703--6230826	21	6.0	21	72	3	117	23	16	24	35	1.95
6230699--6230817	41	2.9	41	96	0	220	20	18	24	36	1.94
6230724--6230796	20	3.6	20	72	3	74	15	20	23	41	1.90
6231403--6231438	5	6.5	6	90	9	51	0	16	52	30	1.44
6231403--6231438	17	2.2	16	90	5	54	0	16	52	30	1.44
6231569--6231788	20	10.8	20	78	8	158	39	24	20	15	1.92
6231569--6231784	82	2.6	82	75	13	201	38	24	21	15	1.92
6236268--6236300	14	2.2	16	89	10	52	39	0	0	60	0.97
6238749--6238829	29	2.8	29	92	1	137	44	9	13	32	1.77
6243459--6243541	29	2.8	29	92	1	139	43	9	14	32	1.78
6259043--6259118	38	2.0	38	92	0	125	46	11	14	27	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6269631--6269703	36	2.1	35	84	2	92	28	23	21	26	1.99
6278619--6278829	107	2.0	107	96	0	386	26	27	12	34	1.92
6281317--6281554	120	2.0	119	84	4	311	37	8	8	44	1.66
6281518--6281572	27	2.0	27	86	6	76	47	1	0	50	1.11
6281544--6281634	47	1.9	47	82	4	112	45	2	5	47	1.38
6282065--6282126	8	6.5	10	80	16	62	20	1	0	77	0.85
6282066--6282126	12	5.3	11	75	21	54	19	1	0	78	0.83
6286548--6286603	2	28.0	2	100	0	112	50	0	0	50	1.00
6286890--6286943	26	2.0	27	89	3	83	68	11	16	3	1.33
6286931--6287031	7	14.0	7	77	13	64	79	3	13	2	1.00
6286929--6286959	16	1.9	16	100	0	62	77	0	22	0	0.77
6286948--6287003	26	2.2	26	83	6	69	83	5	5	5	0.89
6287005--6287041	7	5.7	7	81	18	53	78	0	21	0	0.75
6286927--6287031	8	13.4	8	78	16	53	79	3	14	2	1.00
6291553--6291664	54	2.1	54	89	0	170	38	16	24	20	1.93
6292031--6292085	22	2.5	22	87	0	83	34	14	14	36	1.87
6292521--6292767	113	2.2	113	97	0	467	36	14	21	27	1.93
6292675--6292840	73	2.3	73	97	0	314	31	18	18	31	1.94
6292562--6292948	186	2.1	186	96	0	702	33	16	20	29	1.94
6292492--6293066	299	1.9	298	93	0	988	35	15	19	28	1.93
6292748--6293571	113	7.3	113	93	0	1380	36	15	19	28	1.92
6293913--6294005	3	31.0	3	79	12	102	33	1	0	65	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6295352--6295577	120	1.9	118	82	4	285	37	8	8	46	1.65
6300507--6300541	3	11.7	3	93	0	61	31	0	2	65	1.07
6307016--6307439	145	3.0	145	96	2	770	28	20	17	34	1.95
6319044--6319086	21	2.0	21	86	8	61	2	34	18	44	1.63
6323709--6323746	17	2.2	17	85	0	58	50	13	0	36	1.42
6323931--6323993	31	2.3	26	73	23	65	55	0	4	39	1.21
6323939--6324170	30	7.8	30	74	11	156	55	1	6	36	1.35
6324199--6324277	28	3.2	23	75	20	70	55	0	7	36	1.28
6324218--6324290	28	2.5	29	91	6	112	57	0	6	35	1.25
6323939--6324290	60	5.9	59	67	14	179	53	0	6	38	1.33
6324666--6324764	21	4.8	20	75	6	81	37	23	18	21	1.94
6324731--6324924	20	9.6	20	80	5	212	36	25	19	19	1.95
6324731--6324924	60	3.2	60	83	0	244	36	25	19	19	1.95
6325307--6325377	33	2.2	33	89	0	106	11	21	18	49	1.78
6325457--6325566	21	5.8	20	74	17	108	45	18	24	11	1.83
6325450--6325566	41	3.1	38	81	14	145	46	17	25	11	1.81
6325517--6325573	14	3.7	14	75	20	60	43	22	24	8	1.81
6325509--6325589	33	2.5	33	95	0	144	46	22	22	8	1.78
6325585--6325682	19	5.7	19	70	22	90	10	23	22	43	1.83
6325607--6325696	14	5.7	14	72	23	72	8	24	23	43	1.82
6325590--6325704	33	3.5	33	97	0	221	9	23	20	46	1.80
6327399--6327867	93	5.1	93	99	0	922	21	12	19	46	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6327915--6328013	19	5.4	19	78	12	109	45	28	17	9	1.78
6327952--6328044	33	2.8	33	86	0	132	44	23	20	11	1.85
6327985--6328182	52	3.9	52	77	11	228	42	18	22	15	1.88
6327931--6328164	19	12.5	19	71	21	129	44	20	20	14	1.85
6328189--6328420	33	6.9	33	80	13	285	13	22	18	45	1.84
6328211--6328406	19	11.4	19	73	22	193	13	21	18	45	1.84
6328189--6328420	52	4.6	52	82	13	306	13	22	18	45	1.84
6330701--6330725	12	2.1	12	100	0	50	0	28	0	72	0.86
6330900--6330946	24	2.0	24	87	8	69	38	21	14	25	1.92
6331628--6331857	20	11.5	20	84	1	228	20	18	24	36	1.94
6331844--6331926	21	4.0	21	70	6	69	26	16	22	33	1.96
6332685--6332743	25	2.4	25	91	0	91	64	1	0	33	1.04
6333011--6333074	27	2.4	28	76	5	69	67	3	0	29	1.06
6333029--6333078	21	2.3	21	86	13	66	64	0	0	36	0.94
6333498--6333579	41	2.0	42	87	2	121	25	9	18	46	1.79
6342845--6342898	21	2.6	21	93	0	99	20	14	16	48	1.81
6345382--6345486	40	2.6	41	85	8	137	42	24	15	17	1.87
6345407--6345598	20	9.6	19	72	13	154	40	24	17	17	1.90
6345418--6345599	60	3.0	58	80	6	202	41	23	17	18	1.90
6345419--6345599	40	4.5	40	81	5	186	40	23	17	18	1.90
6345382--6345598	100	2.2	100	90	0	344	41	24	16	17	1.90
6345709--6345759	22	2.3	22	96	0	93	21	43	13	21	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6346145--6346193	20	2.5	20	86	3	64	12	22	20	44	1.84
6348347--6348400	21	2.4	24	78	18	78	24	27	12	35	1.92
6348356--6348408	21	2.5	21	96	0	97	26	26	18	28	1.98
6348374--6348470	21	4.6	21	79	12	83	24	32	19	22	1.97
6348374--6348470	42	2.3	41	76	11	106	24	32	19	22	1.97
6348399--6348487	21	4.2	21	75	12	67	21	35	20	22	1.96
6349901--6349937	14	2.6	14	95	0	65	32	0	18	48	1.49
6349847--6350016	80	2.2	78	94	2	295	32	1	17	49	1.54
6349981--6350016	14	2.6	14	95	0	63	33	0	19	47	1.50
6350340--6350375	18	2.0	18	94	0	63	16	2	25	55	1.55
6352636--6352689	24	2.2	24	93	0	90	40	20	18	20	1.91
6352636--6352703	24	2.8	24	84	0	64	38	20	17	23	1.93
6354537--6354613	29	2.7	29	95	0	136	25	24	33	15	1.95
6358303--6358411	35	3.0	37	89	8	170	44	18	7	30	1.77
6358340--6358403	20	3.4	20	66	29	59	45	18	6	29	1.74
6369594--6369668	31	2.5	29	83	12	89	66	2	6	24	1.28
6369670--6369711	22	1.9	22	85	9	59	57	9	0	33	1.31
6371309--6371369	25	2.3	26	83	13	81	55	3	0	40	1.16
6371558--6371811	135	1.9	135	95	1	456	26	22	18	33	1.96
6371481--6372056	247	2.3	248	86	5	763	25	22	17	35	1.95
6371974--6372147	91	1.9	92	90	1	278	25	22	13	37	1.91
6372072--6372271	105	1.8	105	84	8	267	23	23	14	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6372190--6372246	16	3.4	16	69	21	53	21	26	8	43	1.81
6373126--6373188	19	3.4	19	76	12	69	4	12	0	82	0.82
6373126--6373162	16	2.4	16	91	8	60	2	13	0	83	0.74
6373140--6373190	20	2.5	20	84	12	77	5	11	0	82	0.83
6373128--6373195	17	3.9	17	77	7	57	5	13	0	80	0.87
6373140--6373198	20	3.0	19	76	16	66	6	10	0	83	0.82
6373137--6373203	10	6.4	11	75	15	54	7	13	0	79	0.94
6384893--6384956	22	2.9	22	77	15	60	60	6	0	32	1.21
6386537--6386627	3	30.0	3	77	10	71	57	2	1	39	1.18
6387488--6387552	3	21.0	3	87	6	94	63	0	0	36	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27