genome.fa.s9611.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009611.1 Hibiscus syriacus cultivar Beakdansim tig00116997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6671611

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  2  of  27  ( 3214 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
246287--246328	19	2.2	19	83	8	50	16	9	0	73	1.08
257188--257285	46	2.1	47	96	3	182	31	26	6	35	1.81
258431--258526	30	3.2	30	85	1	113	32	29	19	18	1.96
258475--258580	30	3.5	30	79	5	97	33	21	18	25	1.96
259225--259384	64	2.5	65	82	4	182	26	19	19	35	1.95
268354--268797	220	2.0	217	97	2	782	39	11	15	34	1.83
273771--273895	61	2.0	64	89	4	193	21	17	10	50	1.76
273810--274003	99	2.0	99	96	1	363	20	15	10	53	1.71
274872--274931	22	2.8	22	92	5	97	56	16	13	13	1.67
282606--282640	17	2.1	17	100	0	70	40	0	17	42	1.49
287015--287069	13	4.2	13	78	17	51	40	3	0	56	1.17
290379--290471	21	4.5	21	81	4	109	40	18	23	17	1.90
290379--290471	41	2.3	41	98	0	177	40	18	23	17	1.90
290398--290532	41	3.3	41	81	6	132	38	21	20	19	1.94
290460--290574	20	5.7	20	81	6	106	32	26	17	24	1.97
290457--290594	41	3.4	41	78	6	145	34	24	16	23	1.95
291069--291106	20	1.9	20	88	0	58	13	15	21	50	1.78
291244--291298	25	2.2	24	78	15	58	20	9	18	52	1.71
292235--292279	18	2.5	18	92	0	81	28	44	13	13	1.81
292761--292806	20	2.3	20	92	0	74	39	26	19	15	1.91
292816--292873	14	3.9	14	79	16	71	48	24	17	10	1.78
292800--292890	32	2.8	33	94	3	166	47	21	18	12	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292933--292988	20	2.8	19	86	7	76	16	25	23	35	1.94
294859--294894	14	2.6	14	90	0	54	30	0	22	47	1.52
294982--295097	33	3.4	33	80	11	142	43	19	22	14	1.88
295011--295097	19	4.8	19	83	10	121	45	17	21	14	1.84
295116--295193	20	3.9	20	91	0	129	17	21	23	37	1.94
296238--296291	24	2.2	24	90	0	81	24	16	20	38	1.92
296466--296490	12	2.1	12	100	0	50	72	0	28	0	0.86
298781--298839	19	3.4	19	68	22	65	47	18	20	13	1.82
298966--299002	14	2.6	14	91	0	65	45	24	0	29	1.53
300359--300425	21	3.2	21	68	4	55	19	20	35	23	1.95
300359--300481	42	2.9	41	79	7	113	22	18	36	21	1.95
302484--302544	20	3.1	19	79	9	68	44	18	24	13	1.85
302533--302597	14	4.6	14	96	0	121	43	23	26	7	1.80
302574--302686	33	3.2	33	78	7	109	44	24	19	11	1.84
302621--302691	19	3.7	19	92	3	115	45	22	19	12	1.84
302687--302753	19	3.5	19	83	2	89	8	16	23	50	1.73
303271--303323	20	2.7	20	93	0	88	26	20	28	24	1.99
303332--303385	20	2.7	20	88	5	74	25	16	22	35	1.95
303272--303406	61	2.2	61	81	2	155	22	19	23	34	1.97
303456--303496	21	2.0	21	85	0	55	34	31	17	17	1.93
303836--303886	23	2.2	22	80	10	57	47	0	1	50	1.12
308834--308903	30	2.3	31	90	2	106	25	10	12	51	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327066--327191	66	1.9	66	95	0	225	38	15	11	34	1.82
327078--327191	30	3.6	30	68	23	81	37	16	10	35	1.83
327315--327361	25	1.9	24	82	4	58	4	14	0	80	0.85
327656--327762	56	1.9	56	92	0	178	20	26	21	31	1.98
334258--334301	22	2.0	22	86	8	63	40	2	0	56	1.11
335936--336005	21	3.4	21	70	7	72	31	1	24	42	1.63
335942--336018	40	1.9	40	94	0	136	29	3	25	40	1.74
338908--338939	13	2.5	13	100	0	64	59	21	6	12	1.55
349660--349700	21	1.9	22	90	5	66	12	14	19	53	1.72
353654--353680	2	13.5	2	100	0	54	48	0	0	51	1.00
361307--361345	18	2.2	18	90	0	60	28	5	2	64	1.28
375292--375323	15	2.1	15	94	0	55	56	0	0	43	0.99
375300--375341	22	1.9	22	100	0	84	59	0	0	40	0.97
375637--375699	29	2.2	29	88	5	92	30	4	0	65	1.13
377521--377558	20	1.9	20	94	0	67	57	15	15	10	1.64
381561--381594	6	5.5	6	86	6	50	2	82	0	14	0.79
383376--383416	18	2.3	18	100	0	82	36	4	12	46	1.63
396609--396647	20	2.0	20	84	0	51	33	10	10	46	1.72
397326--397786	112	4.1	112	93	1	773	24	14	14	45	1.83
401581--401636	2	28.0	2	100	0	112	50	0	0	50	1.00
403637--403677	22	1.9	21	95	5	73	21	0	4	73	1.02
405736--405855	41	2.9	41	82	6	143	24	20	5	50	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405783--405873	43	2.1	43	81	0	101	24	17	5	52	1.65
406930--406978	19	2.6	19	87	9	66	30	16	20	32	1.94
407262--407632	184	2.0	186	98	1	728	48	11	17	22	1.78
407670--407736	2	34.0	2	96	3	127	50	0	0	49	1.00
413726--413792	3	22.0	3	87	3	98	64	1	2	31	1.18
414106--414780	113	5.9	113	91	2	964	29	19	14	37	1.91
414101--414785	227	3.0	225	88	3	973	29	18	14	37	1.90
414108--414775	340	2.0	341	89	3	1024	29	19	13	37	1.90
415430--415738	83	3.7	83	94	1	521	37	22	12	26	1.91
416878--416936	5	12.2	5	77	16	54	0	18	0	81	0.69
416878--416924	12	3.8	12	80	8	58	0	14	0	85	0.61
416876--416936	20	3.1	19	80	15	70	0	19	0	80	0.72
416877--416933	30	1.9	29	89	3	87	0	17	0	82	0.67
427517--427553	15	2.7	15	88	12	53	62	8	5	24	1.44
427544--427594	18	2.9	17	75	16	50	72	1	0	25	0.95
428281--428321	20	2.0	21	85	4	57	58	2	2	36	1.24
428938--428963	13	2.0	13	100	0	52	7	61	30	0	1.24
429720--429818	3	33.0	3	93	0	171	64	1	2	32	1.11
430885--430921	17	2.2	17	100	0	74	35	10	24	29	1.89
438596--438674	42	1.9	41	82	7	97	44	2	1	51	1.23
439085--439137	23	2.3	23	87	6	72	49	1	3	45	1.31
439085--439154	13	5.2	13	70	24	56	51	1	2	44	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
439208--439261	11	5.5	10	72	18	51	55	1	0	42	1.10
439208--439261	19	2.8	19	81	10	65	55	1	0	42	1.10
439199--439265	30	2.3	27	77	10	71	47	1	0	50	1.10
439989--440029	18	2.3	18	87	4	57	29	7	2	60	1.36
441121--441159	19	2.0	20	85	14	55	41	0	10	48	1.37
443938--443971	9	3.7	9	84	7	50	32	0	0	67	0.91
443995--444045	26	1.9	27	84	11	70	49	0	0	50	1.00
449358--449552	99	2.0	99	90	0	309	41	14	25	18	1.89
457729--457757	3	9.7	3	100	0	58	65	0	0	34	0.93
459434--459492	3	20.0	3	83	16	79	32	0	1	66	1.02
461055--461088	17	2.0	17	88	0	50	35	0	0	64	0.94
461146--461205	30	2.0	29	83	3	75	51	1	0	46	1.10
464875--464908	3	11.3	3	100	0	68	67	0	0	32	0.91
477073--477131	29	2.0	29	96	0	109	50	13	11	23	1.74
481754--481812	29	2.0	29	100	0	118	49	13	13	23	1.78
484169--484217	24	2.0	24	100	0	98	28	20	18	32	1.96
488986--489029	22	2.0	22	86	0	61	54	0	2	43	1.12
494724--494790	29	2.3	31	75	15	79	31	10	4	53	1.55
497778--497850	29	2.4	32	71	15	73	41	2	6	49	1.44
504503--504899	198	2.0	199	98	1	771	25	15	22	37	1.93
506184--506381	108	1.8	108	90	0	315	30	21	27	20	1.98
506186--506385	36	5.6	36	91	1	276	30	21	28	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510702--510744	22	2.0	22	85	0	59	16	18	23	41	1.89
540222--540281	20	3.0	20	88	9	79	45	3	0	51	1.17
540220--540281	21	3.0	21	90	9	101	43	3	0	53	1.17
540340--540407	32	2.1	32	83	0	82	32	36	10	20	1.86
542818--542890	27	3.0	24	70	26	71	24	12	9	53	1.68
543005--543097	25	3.7	25	73	9	82	37	33	1	27	1.64
542975--543094	50	2.4	51	87	1	161	35	35	1	28	1.67
545229--545260	17	1.9	17	93	6	57	65	3	0	31	1.08
546029--546061	2	17.0	2	93	6	59	48	0	0	51	1.00
562831--563747	457	2.0	459	98	1	1788	22	17	18	41	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27