genome.fa.s9611.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009611.1 Hibiscus syriacus cultivar Beakdansim tig00116997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6671611

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  27  of  27  ( 3214 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6536412--6536498	19	4.8	19	82	13	94	8	20	24	47	1.77
6536456--6536513	14	3.8	14	77	20	62	10	24	20	44	1.82
6536437--6536528	33	2.8	33	91	3	152	10	22	21	44	1.83
6536413--6536528	19	6.8	17	77	16	82	9	21	23	45	1.81
6536616--6536995	94	4.1	93	93	1	589	47	18	11	22	1.81
6538700--6538755	20	2.8	20	84	10	87	39	21	25	14	1.91
6538691--6538812	33	3.5	33	82	7	136	45	19	22	13	1.85
6538691--6538817	20	7.1	19	67	20	67	44	19	22	13	1.86
6538844--6538915	20	3.5	20	84	5	92	12	16	19	51	1.76
6539452--6539646	20	9.6	20	75	6	196	19	18	24	37	1.94
6539454--6539648	40	4.8	41	92	1	304	20	17	23	38	1.93
6539674--6539726	20	2.7	20	81	0	70	13	13	24	49	1.77
6539776--6539829	20	2.7	19	75	8	63	16	18	31	33	1.93
6539817--6539870	19	2.8	19	94	0	90	14	16	16	51	1.76
6544712--6544740	14	2.1	14	100	0	58	31	27	13	27	1.94
6546572--6546609	20	1.9	20	88	0	58	21	26	10	42	1.85
6547298--6547340	21	2.0	21	100	0	86	27	23	18	30	1.98
6564856--6564903	19	2.5	20	82	6	62	35	2	18	43	1.62
6564988--6565101	38	3.0	38	93	0	183	28	25	17	28	1.98
6581084--6581133	15	3.3	15	94	0	82	16	12	32	40	1.84
6582865--6582895	8	3.9	8	91	0	53	12	25	12	48	1.77
6586144--6586204	23	2.7	23	82	5	70	29	27	24	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6586199--6586248	21	2.3	22	86	10	68	38	30	10	22	1.86
6589811--6589866	29	1.9	29	100	0	112	44	25	3	26	1.70
6591952--6592037	38	2.2	38	82	10	95	41	6	1	50	1.37
6592003--6592128	29	4.4	28	74	11	78	34	8	1	54	1.41
6592114--6592174	28	2.2	27	82	8	70	57	3	4	34	1.36
6592202--6592344	30	4.8	30	73	9	107	51	0	6	41	1.32
6592553--6592593	18	2.3	18	95	0	73	48	9	0	41	1.36
6592727--6592852	37	3.2	37	81	16	162	45	4	14	35	1.66
6592764--6592856	45	2.1	45	95	0	168	47	4	13	34	1.63
6593268--6593448	89	2.0	92	91	3	296	37	15	9	38	1.80
6594768--6594800	3	11.0	3	87	12	50	63	0	0	36	0.95
6595615--6595760	73	2.0	73	97	2	276	28	26	13	32	1.93
6595897--6595930	18	1.9	18	94	5	61	61	0	0	38	0.96
6596801--6596840	20	2.0	20	90	4	55	57	0	0	42	0.98
6597017--6597055	19	2.1	19	85	0	51	61	0	2	35	1.10
6599850--6599911	27	2.3	27	100	0	124	16	14	29	40	1.88
6600799--6600855	30	1.9	30	88	0	87	42	5	3	49	1.42
6601115--6601161	23	2.0	24	95	4	87	44	17	8	29	1.78
6604769--6604807	19	2.1	19	85	0	51	51	2	7	38	1.44
6606154--6606245	39	2.3	43	83	9	113	31	20	21	26	1.98
6606191--6606428	41	5.8	41	68	7	124	28	16	21	33	1.95
6606191--6606330	42	3.3	43	72	8	119	27	15	22	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6606470--6606556	43	2.1	41	82	4	102	20	13	21	43	1.87
6609055--6609080	2	13.0	2	100	0	52	50	0	0	50	1.00
6610255--6610313	21	2.8	21	86	0	82	20	5	20	54	1.63
6610461--6610734	43	6.4	43	86	4	313	27	24	20	27	1.99
6610461--6610734	129	2.1	129	84	2	345	27	24	20	27	1.99
6611145--6611210	28	2.3	29	84	7	91	42	4	16	36	1.69
6615100--6615158	31	1.9	31	96	0	109	35	8	23	32	1.85
6616046--6616100	23	2.3	24	96	3	103	29	18	16	36	1.92
6616766--6616875	29	3.8	29	96	2	195	39	5	20	35	1.75
6621734--6621852	42	2.9	42	83	1	159	19	14	16	49	1.79
6622206--6622250	23	2.0	23	86	0	63	53	2	2	42	1.25
6622290--6622359	29	2.3	32	81	13	85	51	2	0	45	1.16
6622218--6622388	90	1.9	86	81	9	202	50	3	0	45	1.18
6622326--6622432	48	2.2	47	77	12	108	50	0	0	48	1.07
6622899--6622955	26	2.2	26	83	0	69	43	17	17	21	1.88
6623614--6623650	7	4.9	8	87	12	60	72	0	0	27	0.84
6623614--6623656	7	5.9	7	89	8	59	69	0	0	30	0.88
6623614--6623650	15	2.5	15	100	0	74	72	0	0	27	0.84
6623791--6623821	2	15.5	2	100	0	62	51	0	0	48	1.00
6624086--6624472	185	2.1	182	89	3	582	45	8	3	42	1.50
6631952--6632064	31	3.6	31	77	9	106	33	15	15	36	1.88
6641281--6641310	6	4.8	6	92	8	51	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6642621--6642668	25	2.0	23	84	8	60	0	8	27	64	1.22
6643183--6643612	37	12.3	36	76	16	306	44	6	3	45	1.48
6643405--6643459	27	2.0	28	89	3	85	45	7	3	43	1.49
6643410--6643467	27	2.1	27	87	0	80	51	6	3	37	1.46
6643432--6643592	36	4.5	35	78	13	150	45	7	4	42	1.52
6643386--6643515	63	2.0	64	83	1	163	47	7	3	40	1.50
6643502--6643527	11	2.4	11	100	0	52	42	7	7	42	1.62
6644299--6645275	84	11.8	83	82	4	960	25	18	24	31	1.98
6644299--6645275	327	3.0	326	80	5	1036	25	18	24	31	1.98
6646468--6646651	95	1.9	94	93	1	314	29	16	19	34	1.94
6650161--6650206	19	2.5	20	82	13	62	80	2	4	13	0.95
6650161--6650220	15	4.3	13	81	12	57	80	1	8	10	0.99
6650171--6650232	14	4.3	14	80	10	54	75	3	12	8	1.14
6650161--6650289	13	9.6	13	70	17	68	75	3	10	10	1.15
6651512--6651563	23	2.4	22	90	6	79	75	0	3	21	0.97
6651636--6651745	34	3.1	37	75	20	110	47	5	5	41	1.49
6651745--6651809	31	2.1	31	85	2	85	49	7	0	43	1.31
6651778--6651860	36	2.3	37	85	6	107	48	8	3	39	1.51
6651778--6651844	35	1.9	34	82	8	82	49	8	2	38	1.50
6651819--6651872	27	2.0	27	85	0	72	48	9	3	38	1.53
6651871--6651982	37	3.0	37	77	13	122	47	8	1	41	1.45
6651971--6652007	19	1.9	19	94	0	65	59	2	2	35	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6656743--6656767	6	4.2	6	100	0	50	16	16	36	32	1.90
6658903--6658947	21	2.1	21	83	0	54	37	13	13	35	1.84
6659836--6659906	29	2.4	29	88	0	97	32	16	19	30	1.95
6661854--6661906	17	3.3	15	75	15	52	56	26	1	15	1.49
6671491--6671560	21	3.0	21	71	22	52	68	0	2	28	1.04
6671496--6671549	15	3.5	15	80	7	56	68	0	3	27	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27

The End!