genome.fa.s9611.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009611.1 Hibiscus syriacus cultivar Beakdansim tig00116997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6671611

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  11  of  27  ( 3214 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2772892--2772934	14	3.1	14	87	12	63	72	0	0	27	0.85
2772905--2772944	12	3.5	12	83	10	57	72	0	0	27	0.85
2772890--2772946	13	4.5	13	81	18	68	70	0	0	29	0.88
2773692--2773733	20	2.0	21	95	4	77	52	0	7	40	1.29
2775566--2775604	12	3.3	12	86	13	55	71	0	7	20	1.10
2776898--2776933	2	19.0	2	88	11	58	47	0	0	52	1.00
2778324--2778365	21	2.0	21	81	9	50	69	2	4	23	1.20
2779354--2779411	29	2.0	28	83	3	71	55	1	0	43	1.10
2779923--2779980	26	2.2	26	84	6	73	41	18	17	22	1.90
2782182--2782230	22	2.2	22	100	0	98	69	0	4	26	1.06
2786120--2786167	23	2.1	23	85	14	64	50	0	2	47	1.12
2789779--2789839	29	2.2	28	88	5	88	27	14	6	50	1.68
2790776--2791135	179	2.0	179	100	0	720	36	10	27	25	1.89
2792656--2792687	10	3.2	10	95	0	55	25	0	28	46	1.53
2796268--2796318	20	2.5	20	100	0	102	21	7	19	50	1.72
2797025--2797123	49	2.0	50	80	9	114	47	2	0	50	1.12
2797093--2797169	32	2.6	30	84	10	88	41	0	3	54	1.19
2797257--2797426	30	5.8	28	72	16	105	53	1	0	44	1.12
2797249--2797301	20	2.7	20	75	16	56	49	1	0	49	1.12
2797257--2797361	29	3.6	29	80	13	108	54	1	0	43	1.11
2797374--2797417	22	2.0	23	86	4	63	54	0	0	45	0.99
2797608--2797727	42	2.9	42	84	0	159	49	15	15	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2804065--2804694	320	2.0	320	97	0	1197	35	14	27	22	1.93
2816675--2816798	61	2.0	61	100	0	248	37	15	14	32	1.88
2819029--2819086	24	2.4	25	91	8	93	25	25	29	18	1.98
2820682--2820738	28	2.0	28	83	12	73	28	7	8	56	1.56
2820743--2821108	138	2.7	137	79	5	332	33	10	10	46	1.72
2823763--2823841	35	2.3	35	90	0	122	32	3	17	45	1.67
2827885--2827910	2	13.0	2	100	0	52	50	0	0	50	1.00
2837837--2837876	20	2.0	20	90	4	64	42	7	25	25	1.80
2851157--2851223	32	2.1	32	100	0	134	50	14	5	28	1.66
2851148--2851219	32	2.4	29	81	18	94	45	18	5	30	1.72
2851351--2851438	28	3.1	28	100	0	176	50	18	6	25	1.71
2852866--2853068	75	2.7	76	86	5	261	19	24	33	23	1.97
2853444--2853487	17	2.6	17	89	7	63	59	27	0	13	1.35
2859230--2859269	21	1.9	21	85	10	55	35	10	2	52	1.48
2861195--2861389	74	2.6	75	87	3	268	19	23	32	24	1.98
2873434--2873484	27	1.9	27	92	4	86	54	3	3	37	1.37
2877384--2877432	26	1.9	26	87	4	73	48	0	2	48	1.12
2882434--2882463	15	2.0	15	100	0	60	33	13	26	26	1.93
2889850--2889879	15	1.9	16	93	6	53	56	0	0	43	0.99
2892455--2892504	25	2.0	26	88	11	77	34	46	6	14	1.69
2898966--2899082	61	1.9	60	82	1	144	35	11	14	38	1.82
2899146--2899179	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2904869--2904976	41	2.6	42	89	1	164	17	15	17	49	1.81
2905551--2905606	22	2.5	22	72	16	53	57	0	0	42	0.99
2905384--2905742	190	1.9	182	91	7	580	44	7	5	42	1.55
2905760--2905794	14	2.5	14	90	0	52	31	14	14	40	1.86
2905802--2905909	15	6.9	15	71	14	85	37	20	1	40	1.63
2905802--2905909	29	3.5	29	83	15	144	37	20	1	40	1.63
2913886--2913926	22	1.9	22	85	14	59	46	2	4	46	1.37
2916310--2916463	64	2.4	64	76	10	154	26	18	19	35	1.95
2922668--2922701	15	2.3	15	89	0	50	32	35	17	14	1.91
2922786--2922860	29	2.6	29	95	2	134	17	21	17	44	1.87
2924711--2924808	49	2.0	49	100	0	196	42	10	14	32	1.79
2925032--2925121	20	4.4	20	78	2	108	13	21	24	41	1.89
2925004--2925119	61	1.9	61	94	0	205	16	19	24	39	1.91
2925276--2925306	5	6.4	5	92	7	55	38	22	38	0	1.54
2925909--2926058	19	7.5	19	74	11	138	40	20	18	20	1.92
2925927--2926001	22	3.5	22	81	3	107	38	25	16	20	1.92
2925909--2926099	43	4.7	41	83	8	255	39	21	19	19	1.92
2925992--2926102	19	5.6	21	82	9	103	40	20	21	17	1.91
2926269--2926580	158	1.9	161	80	3	360	48	7	16	27	1.72
2927248--2927294	25	1.9	24	82	4	58	48	8	23	19	1.75
2928081--2928107	6	4.5	6	100	0	54	66	18	0	14	1.25
2932103--2932178	29	2.6	29	79	6	82	27	25	13	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2932191--2932318	51	2.5	51	83	2	150	16	31	28	23	1.96
2936480--2936617	69	2.0	69	100	0	276	18	27	31	21	1.97
2938055--2938275	110	2.0	111	95	0	399	45	9	8	35	1.68
2948137--2948161	3	8.3	3	100	0	50	0	32	32	36	1.58
2948504--2948541	18	2.1	18	90	0	58	31	23	21	23	1.98
2950204--2950244	18	2.3	18	91	4	66	63	2	4	29	1.28
2950286--2950317	10	3.2	10	95	0	55	37	0	31	31	1.58
2951495--2951591	14	6.9	14	71	0	77	34	6	8	51	1.57
2951496--2951665	56	2.9	57	86	6	218	36	8	5	50	1.55
2951495--2951664	28	5.9	28	82	6	180	36	7	5	50	1.55
2951524--2951622	14	6.8	16	66	21	74	37	9	4	49	1.53
2951586--2951635	15	3.3	15	75	10	57	42	8	2	48	1.44
2954522--2954560	19	2.0	21	85	10	55	20	15	0	64	1.30
2954580--2954631	22	2.3	21	75	21	52	25	9	1	63	1.35
2963561--2963594	15	2.3	15	94	0	59	32	0	5	61	1.20
2963555--2963598	15	2.8	15	79	6	52	34	0	4	61	1.16
2969364--2969422	25	2.3	26	80	11	70	49	5	15	30	1.66
2969364--2969418	26	2.2	25	83	9	67	49	5	12	32	1.64
2973223--2973252	15	2.0	15	100	0	60	40	6	0	53	1.27
2974250--2974299	24	2.0	25	92	3	84	60	6	12	22	1.53
2976810--2976869	22	2.9	21	76	9	70	51	0	0	48	1.00
2976813--2976877	19	3.1	23	71	22	63	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2976809--2976892	13	6.4	14	72	13	63	51	0	0	48	1.00
2982406--2982444	19	2.1	19	85	9	53	25	23	2	48	1.63
2985485--2985571	27	3.3	27	75	16	83	44	4	1	49	1.30
2985697--2985753	27	2.1	27	83	0	69	61	0	3	35	1.13
2991183--2991288	31	3.4	31	97	0	194	37	16	12	33	1.85
2992067--2992118	19	2.7	19	100	0	104	30	17	30	21	1.96
2992952--2993025	18	3.9	18	83	10	94	21	21	29	27	1.99
2992952--2993028	39	2.0	39	92	0	127	23	20	28	27	1.99
2994339--2994473	31	4.4	31	81	9	143	35	12	13	38	1.82
2994352--2994473	62	2.0	62	90	3	192	34	11	14	39	1.82
2999896--2999944	23	2.1	23	82	14	57	59	22	0	18	1.38
3013624--3013678	24	2.3	24	93	6	94	18	14	12	54	1.71
3013624--3013666	14	3.4	14	75	24	58	16	13	13	55	1.69
3013932--3013974	10	4.1	10	82	11	59	11	9	16	62	1.53
3013931--3013974	22	2.0	22	95	0	79	11	9	15	63	1.51
3015069--3015144	21	3.6	21	83	3	91	21	32	22	23	1.98
3015071--3015164	42	2.2	42	83	3	109	21	32	21	24	1.97
3015092--3015164	21	3.5	21	81	7	85	21	34	21	21	1.97
3016520--3016555	14	2.6	14	90	0	54	30	2	22	44	1.67
3016534--3016685	64	2.4	65	93	1	252	28	1	17	51	1.56
3016752--3016843	33	2.8	33	98	0	175	35	23	16	23	1.94
3017043--3017083	18	2.3	18	91	0	64	17	2	26	53	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3019337--3019390	24	2.2	24	93	0	90	40	16	14	27	1.88
3020145--3020182	16	2.5	15	84	12	51	65	0	5	28	1.14
3020309--3020406	40	2.5	39	79	9	101	37	13	19	29	1.90
3020340--3020449	20	5.4	20	70	13	82	35	10	21	31	1.88
3020340--3020449	40	2.7	40	84	6	125	35	10	21	31	1.88
3026110--3026153	21	2.0	23	86	8	65	52	2	0	45	1.13
3039006--3039087	40	2.0	40	90	0	128	50	7	7	35	1.58
3050927--3050988	25	2.4	26	84	7	74	61	0	1	37	1.06
3053313--3053362	24	2.2	24	85	7	68	42	0	2	56	1.11
3060599--3060627	6	4.8	6	100	0	58	51	0	48	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27