genome.fa.s9611.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009611.1 Hibiscus syriacus cultivar Beakdansim tig00116997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6671611

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  3  of  27  ( 3214 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
568033--568067	18	1.9	18	88	0	52	54	0	17	28	1.43
571768--571817	25	2.1	23	81	7	55	40	6	8	46	1.58
573435--573611	32	5.5	32	80	8	144	15	27	18	38	1.91
573463--573632	63	2.6	66	79	6	186	15	25	20	38	1.92
573435--573632	33	6.1	33	81	5	181	15	26	19	38	1.92
573965--574007	10	3.9	10	78	21	50	60	25	11	2	1.43
573966--574016	14	3.9	14	73	19	56	60	27	9	1	1.39
573963--574040	24	3.3	23	87	3	102	62	24	7	5	1.42
573980--574017	20	1.9	20	84	10	51	63	26	7	2	1.35
573989--574045	14	3.9	14	75	6	51	66	24	5	3	1.28
573975--574051	24	3.2	24	80	7	75	66	23	6	3	1.32
578182--578215	18	1.9	18	88	5	52	17	26	29	26	1.98
583597--583704	26	4.0	26	73	16	87	48	0	0	50	1.13
583608--583666	23	2.6	21	75	15	55	49	1	0	49	1.11
583606--583704	46	2.2	46	82	14	125	49	1	1	48	1.14
583814--583876	19	3.3	18	71	8	54	44	3	1	50	1.27
583812--583895	37	2.2	38	79	12	102	45	3	1	50	1.27
584109--584154	15	2.8	15	81	18	56	45	2	6	45	1.41
584468--584508	19	2.1	20	90	4	66	56	2	0	41	1.13
585407--585453	18	2.6	18	77	16	51	38	0	0	61	0.96
585850--585890	16	2.4	18	88	8	59	41	2	2	53	1.27
588186--588258	37	2.0	36	97	2	137	39	21	13	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592456--592487	5	6.4	5	100	0	64	62	0	0	37	0.95
594283--594339	16	3.3	16	68	17	51	17	29	10	42	1.83
594276--594383	36	3.0	36	98	0	207	19	26	11	42	1.85
599898--599930	16	2.1	16	88	5	50	36	6	3	54	1.41
618898--618939	21	2.0	21	90	9	68	42	2	0	54	1.13
623155--623218	20	3.2	20	75	4	74	54	0	3	42	1.16
626568--626615	21	2.2	22	88	7	71	29	22	6	41	1.78
631030--631193	45	3.6	45	81	6	179	37	7	13	41	1.72
632837--633035	110	1.8	110	82	6	260	41	19	22	16	1.90
635449--635487	4	9.8	4	88	0	51	41	0	5	53	1.23
635449--635487	6	6.5	6	87	0	51	41	0	5	53	1.23
635449--635487	10	3.9	10	89	0	51	41	0	5	53	1.23
639077--639189	24	4.7	24	84	6	131	27	12	17	42	1.85
639277--639344	35	2.1	33	83	10	86	10	25	30	33	1.89
645064--645372	156	2.0	156	93	0	528	29	23	13	33	1.93
655009--655033	2	12.5	2	100	0	50	0	48	0	52	1.00
657928--657984	28	2.1	26	80	6	60	42	12	19	26	1.86
660369--660408	17	2.2	19	82	13	57	72	15	5	7	1.24
660371--660408	18	2.2	18	90	4	60	73	13	5	7	1.22
660460--660593	65	2.1	65	92	0	223	55	17	10	16	1.69
662697--662920	111	2.0	111	98	0	430	48	14	12	25	1.78
665507--665573	3	22.3	3	93	6	118	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667986--668048	31	2.0	31	87	6	92	20	23	17	38	1.93
674557--674602	24	1.9	24	86	0	65	8	43	10	36	1.71
674556--674653	42	2.3	42	79	6	101	9	40	10	39	1.71
674750--674775	6	4.3	6	100	0	52	0	50	15	34	1.45
674740--674797	30	2.0	29	86	3	80	3	41	12	43	1.59
675314--675395	39	2.1	39	86	0	110	13	30	14	41	1.84
685852--685882	12	2.6	12	100	0	62	35	38	16	9	1.81
691946--691982	7	5.3	7	100	0	74	29	0	43	27	1.55
696236--696272	19	1.9	19	100	0	74	37	24	5	32	1.78
699844--699924	30	2.6	30	75	11	83	53	2	8	35	1.45
702651--702694	21	2.1	21	95	0	79	18	11	50	20	1.77
716589--716630	20	2.1	20	86	0	57	59	19	11	9	1.59
722496--722529	2	17.0	2	100	0	68	50	0	0	50	1.00
729392--729436	23	2.0	23	90	0	72	60	11	6	22	1.54
731996--732028	2	16.5	2	100	0	66	51	0	0	48	1.00
732028--732062	2	17.5	2	100	0	70	51	0	48	0	1.00
732183--732236	13	3.4	17	68	21	53	42	9	1	46	1.46
733089--733140	21	2.5	21	93	0	86	36	11	13	38	1.81
733662--734012	174	2.0	173	89	3	537	43	16	13	25	1.85
741793--741821	2	14.5	2	100	0	58	48	0	0	51	1.00
743488--743876	185	2.1	184	90	1	611	41	4	7	46	1.52
744258--744308	23	2.1	23	82	13	59	58	0	3	37	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
747454--747536	39	2.1	39	84	0	103	48	12	7	32	1.68
747566--747643	13	5.9	13	77	7	77	23	24	1	51	1.56
747566--747643	25	3.0	25	85	11	86	23	24	1	51	1.56
747681--747730	19	2.7	18	90	6	82	32	16	6	46	1.71
751264--751324	23	2.7	23	85	5	72	52	16	19	11	1.74
751286--751342	23	2.5	23	94	0	96	50	10	21	17	1.75
756323--756357	4	8.8	4	100	0	70	77	0	0	22	0.78
761124--761203	3	27.0	3	97	2	153	66	0	0	33	0.92
761606--761653	21	2.2	21	89	10	71	52	27	0	20	1.47
762209--762269	16	3.8	16	95	0	113	32	19	11	36	1.88
769084--769130	21	2.2	22	77	11	53	36	27	12	23	1.91
769413--769451	15	2.6	15	91	0	60	38	5	33	23	1.77
775728--776006	115	2.4	114	89	4	427	22	12	26	38	1.89
776326--776374	24	2.0	24	88	4	71	34	2	14	48	1.55
781153--781266	39	2.9	39	86	0	156	18	40	7	33	1.80
784724--784755	15	2.1	15	94	0	55	65	0	0	34	0.93
785184--785241	29	2.1	27	87	6	80	53	18	12	15	1.72
787096--787271	72	2.5	71	80	11	207	23	23	19	33	1.97
787096--787275	36	5.0	35	77	9	152	23	23	19	33	1.97
789111--789199	45	2.0	45	97	2	171	40	4	0	55	1.20
789111--789171	14	4.1	16	64	23	51	39	4	0	55	1.21
790929--790986	15	3.9	15	88	0	89	8	10	65	15	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
790929--790994	15	4.4	15	88	0	87	7	12	65	15	1.47
796348--796380	17	2.0	17	88	5	50	45	9	0	45	1.35
796821--796953	56	2.3	56	83	8	171	12	12	17	57	1.64
796879--797200	161	2.0	160	98	1	619	16	14	15	53	1.74
802631--802821	56	3.4	56	66	16	131	45	2	8	42	1.49
802658--802887	115	2.0	115	95	0	415	42	3	10	43	1.58
805584--805643	30	2.0	30	96	0	111	35	20	8	36	1.82
807539--807592	17	3.4	17	70	15	60	61	0	0	38	0.96
807544--807605	31	2.0	31	96	0	115	64	1	0	33	1.03
817022--817070	2	24.5	2	100	0	98	51	0	0	48	1.00
821644--821724	23	3.5	23	69	15	67	13	30	32	23	1.93
822397--822468	20	3.6	20	74	7	74	30	25	19	25	1.98
822400--822490	40	2.2	40	84	5	112	36	23	16	24	1.94
823059--823152	42	2.2	42	81	3	109	24	36	18	21	1.95
823574--823961	203	1.9	198	95	4	699	38	11	18	31	1.87
824704--824742	14	2.8	14	92	0	69	35	0	17	46	1.49
824703--824763	28	2.2	29	82	8	81	36	0	16	47	1.47
827129--827165	14	2.6	14	91	4	56	5	21	21	51	1.68
827348--827401	24	2.2	24	90	0	81	42	20	16	20	1.89
828273--828309	19	1.9	19	88	0	56	24	16	27	32	1.96
833653--833939	143	2.0	143	100	0	574	23	21	17	37	1.94
835458--835524	15	4.4	15	76	14	57	52	0	4	43	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
835485--835524	8	5.2	8	88	8	57	50	0	2	47	1.14
842517--842669	23	6.7	23	93	0	234	28	26	26	18	1.98
844288--844331	13	3.4	13	83	0	61	18	45	18	18	1.86
848597--848734	64	2.2	63	81	6	154	26	24	16	32	1.96
852833--852876	20	2.2	20	95	0	79	54	6	0	38	1.27
859482--859529	21	2.3	21	85	7	62	31	37	14	16	1.89
859491--859544	21	2.6	21	82	5	65	27	35	14	22	1.93
861606--861632	13	2.1	13	100	0	54	14	29	22	33	1.94
861869--862024	41	3.8	41	93	1	269	37	25	21	16	1.93
861931--862000	20	3.5	20	70	18	72	40	24	22	12	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27