genome.fa.s9611.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009611.1 Hibiscus syriacus cultivar Beakdansim tig00116997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6671611

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  18  of  27  ( 3214 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4754862--4754929	24	2.8	24	88	4	82	20	2	14	61	1.46
4754943--4755013	23	3.1	23	70	0	70	26	12	16	43	1.84
4756282--4756324	13	3.3	13	76	0	50	41	0	9	48	1.35
4756514--4756543	9	3.3	9	90	0	51	36	0	10	53	1.35
4756507--4756543	18	2.0	19	94	5	67	37	0	10	51	1.37
4759023--4759057	17	2.1	17	89	10	54	51	0	0	48	1.00
4765946--4766096	72	2.1	74	92	2	261	28	5	9	55	1.56
4767140--4767197	29	2.0	29	89	0	89	13	34	27	24	1.93
4767240--4767267	14	2.0	14	100	0	56	21	42	28	7	1.79
4767240--4767298	14	3.8	14	74	23	55	23	40	27	8	1.83
4786561--4786589	13	2.3	13	94	5	51	72	0	0	27	0.85
4786569--4786597	15	1.9	15	100	0	58	72	0	0	27	0.85
4791168--4791465	54	5.5	54	91	0	470	30	21	20	27	1.98
4791816--4791889	22	3.5	22	70	15	75	28	27	13	31	1.94
4791791--4791884	42	2.2	42	100	0	188	28	23	14	32	1.94
4791874--4792053	96	1.9	95	90	3	290	26	26	17	29	1.98
4796088--4796136	22	2.2	22	96	0	89	51	18	6	24	1.69
4797691--4797730	3	13.3	3	89	0	53	67	7	0	25	1.16
4800423--4800458	18	2.0	18	100	0	72	27	5	22	44	1.75
4801739--4801805	31	2.2	31	91	0	107	32	17	22	26	1.96
4817465--4817506	21	2.0	21	85	0	57	47	16	21	14	1.82
4820040--4820067	11	2.5	11	100	0	56	14	67	10	7	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4821369--4821437	34	2.1	34	84	7	90	21	28	15	33	1.95
4821876--4821953	21	3.7	21	79	16	90	21	19	34	24	1.96
4822033--4822090	30	2.0	29	90	10	91	44	17	5	32	1.70
4822033--4822092	29	2.0	30	93	6	104	43	16	6	33	1.74
4824258--4824326	34	2.1	34	83	5	88	21	30	15	31	1.95
4824694--4824767	20	3.7	20	81	3	85	29	24	25	20	1.99
4824685--4824767	41	2.0	41	86	4	114	27	26	25	20	1.99
4824795--4824849	22	2.7	19	76	17	56	23	18	32	25	1.97
4824802--4824845	22	2.0	23	90	4	72	22	15	31	29	1.95
4826095--4826132	15	2.4	16	82	4	51	15	15	5	63	1.48
4826065--4826132	31	2.2	31	84	5	84	19	16	4	60	1.52
4826093--4826177	15	5.7	15	67	15	50	20	17	4	57	1.57
4826276--4826300	4	6.2	4	100	0	50	24	0	0	76	0.80
4827564--4827627	33	2.0	33	90	9	105	45	34	6	14	1.70
4827559--4827635	33	2.3	32	82	8	102	41	35	9	14	1.77
4829597--4829634	19	2.1	19	85	5	51	36	13	15	34	1.87
4834010--4834448	139	3.2	138	78	6	426	33	28	15	23	1.95
4834516--4834700	61	3.0	61	65	12	144	35	24	12	28	1.91
4834484--4834816	122	2.7	122	83	5	415	34	22	14	29	1.93
4835749--4835810	29	2.1	29	81	0	70	29	14	6	50	1.68
4835865--4836154	112	2.5	112	84	7	368	23	14	16	45	1.85
4836192--4836271	36	2.2	38	88	6	121	25	11	3	60	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4845781--4845823	20	2.2	20	86	0	59	53	0	0	46	1.00
4847616--4847727	53	2.2	52	85	3	145	50	18	8	22	1.75
4847668--4847796	64	2.0	65	87	1	188	52	17	6	23	1.68
4849133--4849176	21	2.1	21	100	0	88	40	15	13	29	1.86
4857697--4857727	3	10.3	3	92	0	53	64	0	35	0	0.94
4860410--4860513	30	3.5	30	82	3	129	37	9	12	40	1.76
4860802--4860843	17	2.4	18	85	14	54	47	0	0	52	1.00
4860847--4860890	13	3.6	12	82	14	54	59	0	0	40	0.98
4860917--4860961	23	2.0	23	86	0	63	40	2	4	53	1.33
4860918--4860968	23	2.2	23	82	0	57	43	1	3	50	1.31
4861075--4861122	26	1.9	24	91	8	62	52	0	0	47	1.00
4861110--4861165	23	2.3	23	84	6	67	48	0	0	51	1.00
4861183--4861210	11	2.5	11	100	0	56	39	0	0	60	0.97
4864248--4864300	21	2.5	21	93	0	88	35	18	20	24	1.95
4868359--4868466	54	2.0	54	94	0	189	33	11	17	37	1.85
4870954--4871005	21	2.5	21	81	3	61	38	19	25	17	1.93
4870994--4871108	20	5.7	20	81	8	108	32	26	18	23	1.97
4870991--4871118	61	2.1	61	85	2	168	35	25	16	23	1.95
4871296--4871339	22	2.0	22	90	0	70	18	45	13	22	1.84
4871601--4871659	20	3.0	20	87	0	73	16	18	22	42	1.89
4872979--4873023	18	2.5	18	88	0	72	26	44	15	13	1.83
4873505--4873550	20	2.3	20	88	0	65	36	26	21	15	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4873516--4873560	20	2.3	20	84	3	65	40	20	24	15	1.91
4873544--4873635	19	5.4	19	65	24	69	47	21	18	11	1.80
4873560--4873618	14	3.9	14	76	20	64	47	23	16	11	1.80
4873544--4873635	33	2.8	33	93	0	157	47	21	18	11	1.80
4873647--4873758	33	3.4	33	91	1	181	10	16	22	50	1.76
4873652--4873742	14	5.9	14	70	20	65	9	15	23	51	1.73
4873743--4873798	20	2.8	19	86	7	76	16	25	23	35	1.94
4874161--4874190	15	2.0	15	100	0	60	26	33	20	20	1.97
4874177--4874264	41	2.1	41	85	2	122	21	43	14	20	1.88
4875823--4875911	14	5.6	14	67	23	52	44	19	23	12	1.84
4875823--4875931	33	3.3	33	93	0	191	45	19	22	11	1.83
4875836--4875928	19	5.4	18	71	23	85	47	18	21	12	1.82
4875804--4875962	33	4.8	32	83	6	160	45	22	20	12	1.84
4875902--4875977	18	4.3	19	71	21	76	47	25	15	11	1.80
4875977--4876070	33	2.8	33	95	0	161	13	22	20	43	1.87
4875974--4876070	19	5.6	19	68	22	79	13	22	20	43	1.87
4876289--4876339	20	2.5	20	100	0	102	19	31	19	29	1.97
4877078--4877131	24	2.2	24	90	0	81	22	16	20	40	1.91
4879556--4879682	33	3.8	33	82	4	148	47	18	18	16	1.83
4879561--4879689	66	2.0	66	88	0	195	47	17	17	17	1.83
4879682--4879771	33	2.7	33	91	0	135	15	22	18	43	1.88
4879713--4879771	19	3.4	19	66	22	56	13	22	18	45	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4879879--4879914	14	2.6	14	95	0	63	41	25	2	30	1.69
4881272--4881365	42	2.2	42	81	7	102	21	21	34	23	1.97
4881609--4881799	94	2.0	94	95	0	346	46	20	12	20	1.82
4883492--4883613	20	6.8	19	68	22	86	45	20	22	11	1.83
4883492--4883613	33	3.4	36	85	7	130	45	20	22	11	1.83
4883541--4883595	14	3.6	14	73	21	56	41	25	23	9	1.83
4883517--4883613	33	2.9	33	92	4	151	43	22	23	10	1.84
4883618--4883680	19	3.3	19	80	8	65	14	15	20	49	1.80
4883625--4883674	19	2.6	19	90	3	73	14	20	20	46	1.84
4884200--4884413	20	10.6	20	75	8	139	25	21	19	34	1.96
4884200--4884413	41	5.3	40	72	10	130	25	21	19	34	1.96
4884196--4884416	61	3.6	61	74	8	189	26	20	18	34	1.95
4884195--4884431	122	1.9	122	83	5	300	27	20	19	32	1.97
4884444--4884484	21	2.0	21	85	0	55	34	29	17	19	1.94
4884976--4885020	23	1.9	24	86	13	67	35	0	11	53	1.37
4885983--4886156	69	2.5	69	92	1	287	43	14	12	28	1.83
4886210--4886303	40	2.3	40	87	0	143	37	8	17	37	1.80
4889863--4889901	19	2.1	18	85	4	51	64	5	0	30	1.15
4894726--4894766	18	2.3	18	95	0	73	26	12	29	31	1.92
4900542--4900620	33	2.4	33	81	10	108	45	34	6	13	1.69
4904302--4904350	25	1.9	26	84	12	66	59	0	4	36	1.17
4911865--4911950	19	4.2	19	76	16	82	36	5	27	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4912352--4912448	19	4.9	19	76	7	86	32	22	21	22	1.98
4912353--4912448	40	2.4	40	91	0	156	32	22	21	22	1.98
4912736--4912776	18	2.3	18	91	4	66	36	0	7	56	1.27
4912736--4912778	16	2.5	17	88	7	61	39	0	6	53	1.28
4912736--4912784	18	2.7	18	87	6	55	40	0	8	51	1.32
4913107--4913154	20	2.3	21	86	13	64	68	4	0	27	1.07
4913334--4913363	14	2.1	14	93	0	51	63	0	0	36	0.95
4913866--4913900	12	2.9	12	91	0	52	31	25	5	37	1.80
4930386--4930448	32	2.0	32	100	0	126	42	19	9	28	1.82
4931283--4931319	19	1.9	19	94	0	65	32	29	16	21	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27