genome.fa.s9611.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01009611.1 Hibiscus syriacus cultivar Beakdansim tig00116997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6671611

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  9  of  27  ( 3214 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2204885--2205151	88	2.9	90	84	3	340	68	3	4	23	1.26
2208777--2209646	182	4.8	183	87	3	1198	43	13	14	27	1.83
2209506--2209807	161	1.9	163	88	3	466	45	13	13	27	1.81
2209661--2210143	181	2.7	181	88	3	706	44	12	15	27	1.82
2210530--2210568	19	2.1	18	90	4	60	48	0	15	35	1.45
2210825--2210863	18	2.2	18	86	9	53	46	5	7	41	1.55
2212537--2212575	18	2.2	18	85	0	51	56	0	35	7	1.28
2213288--2213321	12	2.8	12	86	4	50	29	5	29	35	1.81
2214932--2214980	19	2.6	19	90	3	73	30	2	10	57	1.43
2215326--2216621	199	6.5	199	90	1	1996	41	15	14	28	1.86
2215326--2216621	397	3.3	396	91	2	2028	41	15	14	28	1.86
2217922--2217967	20	2.3	20	96	0	83	39	17	21	21	1.93
2219575--2221223	199	8.3	200	87	3	2288	42	15	14	27	1.85
2219575--2221223	398	4.1	398	92	1	2617	42	15	14	27	1.85
2223631--2224166	198	2.7	197	82	5	618	39	15	14	30	1.87
2224066--2224281	115	1.9	115	87	3	319	35	12	17	35	1.86
2223862--2224475	313	2.0	313	96	0	1120	37	13	16	32	1.88
2226417--2226442	6	4.3	6	100	0	52	30	53	0	15	1.42
2229167--2229222	23	2.4	23	93	0	103	46	25	12	16	1.81
2249530--2249602	24	3.1	24	73	13	62	67	1	4	27	1.17
2252664--2252700	18	2.1	18	85	14	51	16	5	2	75	1.10
2260130--2260168	2	19.5	2	100	0	78	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2261752--2261789	15	2.5	15	87	8	51	63	5	2	28	1.30
2267910--2267934	12	2.1	12	100	0	50	32	0	0	68	0.90
2267982--2268024	20	2.2	20	83	8	52	69	0	4	25	1.07
2268018--2268079	28	2.3	26	75	10	63	54	0	4	40	1.22
2268969--2269000	2	16.0	2	100	0	64	50	0	0	50	1.00
2269502--2269578	40	1.9	40	100	0	154	18	58	10	12	1.62
2272077--2272429	190	1.9	190	83	4	471	43	8	4	42	1.57
2274571--2274625	23	2.4	22	81	9	56	43	3	1	50	1.30
2276724--2276780	23	2.5	23	91	0	87	26	14	24	35	1.93
2279585--2280002	144	2.9	144	88	0	604	14	32	13	39	1.85
2286855--2286894	19	2.1	19	90	0	62	32	12	12	42	1.80
2292132--2292195	2	32.0	2	96	0	119	48	0	0	51	1.00
2295129--2295444	34	8.5	35	69	22	159	45	5	6	42	1.53
2295128--2295279	36	4.2	36	80	7	166	44	4	7	42	1.54
2295128--2295279	71	2.1	73	86	4	211	44	4	7	42	1.54
2295235--2295390	79	2.0	74	85	8	206	48	5	5	39	1.51
2295469--2295507	11	3.9	10	90	10	62	17	0	0	82	0.68
2295469--2295507	19	2.0	21	90	10	64	17	0	0	82	0.68
2296840--2296889	3	17.7	3	84	12	54	24	0	2	74	0.93
2296840--2296883	13	3.6	13	82	11	58	25	0	0	75	0.81
2296835--2296891	20	2.9	20	86	2	80	22	0	1	75	0.90
2296882--2296923	21	2.1	21	86	8	61	7	14	7	71	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2302098--2303099	165	6.1	165	93	2	1619	31	23	20	24	1.98
2302098--2303099	329	3.0	330	93	2	1628	31	23	20	24	1.98
2303396--2303421	13	2.0	13	100	0	52	23	30	15	30	1.95
2303552--2303659	31	3.5	31	79	9	132	44	4	7	43	1.53
2303628--2303674	15	2.9	16	73	14	51	57	4	4	34	1.38
2303552--2303683	63	2.1	62	80	13	146	46	5	6	41	1.53
2303610--2303757	75	2.0	70	86	8	199	48	6	5	39	1.51
2303836--2303870	11	3.3	11	88	8	54	20	0	0	80	0.72
2303836--2303874	11	3.9	10	86	10	53	20	0	0	79	0.73
2305062--2305179	1	118.0	1	96	0	200	0	3	0	96	0.21
2310908--2310947	21	1.9	21	100	0	80	52	0	7	40	1.30
2315429--2315776	174	2.0	174	97	0	660	22	18	21	36	1.95
2316371--2316429	31	1.9	31	89	0	91	33	6	20	38	1.79
2321932--2321971	21	1.9	21	94	0	71	40	0	0	60	0.97
2335411--2335489	24	3.7	22	75	19	71	30	18	26	24	1.98
2336595--2336622	5	5.6	5	100	0	56	39	0	21	39	1.54
2337503--2337574	23	3.0	23	76	9	72	27	5	11	55	1.57
2337523--2337570	25	1.9	25	82	0	60	31	4	10	54	1.53
2339271--2339608	168	2.0	169	99	0	669	36	22	7	33	1.83
2345338--2345364	13	2.1	13	100	0	54	66	0	0	33	0.92
2355319--2355348	2	15.0	2	100	0	60	50	0	0	50	1.00
2358191--2358228	2	19.0	2	100	0	76	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2361489--2361713	64	3.5	64	80	6	199	32	20	20	26	1.97
2362370--2362525	31	5.0	31	94	3	262	20	19	21	38	1.94
2364988--2365436	229	2.0	227	94	0	790	45	8	7	39	1.61
2365502--2365551	20	2.5	20	81	12	75	52	10	16	22	1.73
2365669--2365715	20	2.4	19	79	10	58	55	8	17	19	1.67
2368031--2368096	33	2.0	33	87	0	96	28	1	45	24	1.62
2369892--2369954	19	3.4	19	95	2	110	31	3	9	55	1.48
2370037--2371255	198	6.1	198	96	0	2215	36	14	15	33	1.88
2370037--2371255	397	3.1	396	96	0	2233	36	14	15	33	1.88
2370037--2371255	595	2.0	595	98	0	2359	36	14	15	33	1.88
2372718--2372779	18	3.4	18	88	0	88	38	6	33	20	1.79
2372718--2372779	6	10.3	6	83	0	61	38	6	33	20	1.79
2372733--2372783	3	17.0	3	83	0	66	37	3	33	25	1.74
2372721--2372783	12	5.2	12	90	0	81	36	6	33	23	1.80
2374151--2374821	184	3.7	184	98	0	1281	34	15	15	34	1.89
2377380--2377442	23	2.7	23	85	0	81	36	6	17	39	1.75
2377380--2377452	23	3.2	23	82	3	76	35	5	17	41	1.73
2377808--2377870	23	2.7	23	90	0	90	36	6	19	38	1.77
2377808--2377880	23	3.2	23	86	3	85	35	5	19	39	1.75
2377281--2378580	430	3.0	431	99	0	2563	39	8	12	38	1.74
2378239--2378300	23	2.7	23	87	2	81	35	6	19	38	1.77
2378239--2378315	23	3.5	22	84	7	77	35	5	19	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2386273--2386305	15	2.2	15	94	0	57	54	15	24	6	1.63
2387341--2387382	21	2.0	21	95	0	75	28	21	19	30	1.97
2392944--2393039	21	4.7	21	80	6	108	22	22	18	35	1.96
2392943--2393038	40	2.4	41	91	1	149	22	22	18	35	1.96
2392943--2393046	20	5.2	20	71	15	79	25	22	18	34	1.96
2393901--2393954	24	2.2	24	93	0	90	20	18	20	40	1.91
2396489--2396586	19	5.7	19	69	22	81	45	18	23	12	1.83
2396489--2396580	33	2.8	33	93	0	157	46	18	22	11	1.82
2396745--2396781	14	2.6	14	91	0	65	45	21	0	32	1.52
2398129--2398195	21	3.2	21	68	4	55	19	20	35	23	1.95
2398647--2398792	19	7.8	19	79	10	158	47	19	20	12	1.82
2398647--2398792	39	3.9	38	82	10	149	47	19	20	12	1.82
2398647--2398763	58	2.0	59	89	3	182	48	18	20	11	1.79
2398799--2398882	33	2.5	33	86	0	123	7	19	23	50	1.72
2398818--2398907	19	4.9	19	75	15	82	7	22	20	50	1.73
2398845--2398902	19	3.0	20	87	5	91	5	25	18	50	1.68
2398998--2399373	94	4.1	94	91	2	584	48	18	11	21	1.80
2401068--2401187	20	6.7	19	67	28	77	45	18	23	12	1.83
2401115--2401170	14	3.6	14	74	21	58	42	23	25	8	1.82
2401106--2401187	33	2.5	33	95	0	146	45	20	23	10	1.83
2401188--2401366	19	9.5	19	85	7	206	11	18	21	48	1.79
2404023--2404139	57	2.1	57	100	0	234	37	13	14	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2411804--2411856	3	18.0	3	81	11	65	37	0	0	62	0.96
2414791--2414829	17	2.4	17	95	4	71	51	5	0	43	1.24
2420701--2420800	37	2.7	37	85	0	146	39	16	11	34	1.83
2421296--2421343	8	6.4	7	81	9	51	39	0	0	60	0.97
2421465--2421521	17	3.4	17	77	20	57	29	1	1	66	1.12
2421530--2421571	9	4.3	10	80	14	52	26	0	0	73	0.83
2421535--2421572	13	3.0	13	85	14	53	28	0	0	71	0.87
2421533--2421585	23	2.2	25	84	15	69	26	1	0	71	0.96
2421510--2421599	44	2.1	43	81	10	103	28	3	0	67	1.06
2421688--2421743	19	2.9	19	75	19	62	23	8	1	66	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27