genome.fa.s103.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold103
Parameters: 2 7 7 80 10 50 1000
Length:  2633873

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  11  of  21  ( 2458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1144473--1144532	19	3.0	20	76	11	61	53	0	3	43	1.17
1145561--1145597	19	1.9	20	94	5	67	21	2	0	75	0.92
1145560--1145598	6	6.2	6	82	11	51	20	2	0	76	0.90
1145560--1145599	13	3.1	13	81	0	53	20	2	0	77	0.88
1145969--1146069	29	3.6	28	75	10	89	44	0	0	55	0.99
1146118--1146148	2	16.0	2	93	6	55	51	0	0	48	1.00
1147236--1147277	11	3.5	12	80	9	50	69	0	0	30	0.89
1147235--1147300	29	2.2	31	78	10	82	65	0	1	33	1.02
1149016--1149078	25	2.3	27	78	18	67	42	1	0	55	1.09
1149865--1149918	23	2.3	23	84	9	65	48	0	0	51	1.00
1150810--1150839	15	2.0	15	93	0	51	56	0	0	43	0.99
1151012--1151050	15	2.6	14	84	11	51	51	0	0	48	1.00
1152198--1152229	11	3.1	11	91	8	50	65	0	0	34	0.93
1152902--1152941	21	1.9	21	89	0	62	40	5	2	52	1.37
1153227--1153261	18	1.9	18	88	0	52	37	2	0	60	1.12
1153227--1153265	18	2.1	18	85	4	51	38	2	0	58	1.12
1154559--1154602	18	2.4	19	88	3	63	50	0	0	50	1.00
1155040--1155099	15	3.9	15	72	12	50	71	1	5	21	1.14
1160117--1160163	17	2.8	16	84	12	58	72	2	0	25	0.96
1160131--1160172	17	2.4	18	84	7	52	69	2	0	28	1.01
1161692--1161746	6	9.0	6	77	18	60	50	0	3	45	1.19
1161812--1161861	6	8.0	6	91	8	82	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1162977--1163012	2	18.0	2	100	0	72	50	0	0	50	1.00
1180714--1180766	24	2.3	22	75	18	54	54	0	0	45	0.99
1180954--1181023	29	2.4	30	85	4	90	44	0	0	55	0.99
1181046--1181107	27	2.4	25	78	10	70	59	1	3	35	1.23
1181168--1181251	23	3.5	23	67	19	64	65	0	1	33	1.00
1181168--1181259	11	7.6	12	70	23	59	63	0	1	35	1.02
1181189--1181255	31	2.2	29	82	15	75	67	0	1	31	1.00
1181592--1181643	17	3.0	17	71	2	50	44	0	1	53	1.11
1182478--1182592	40	2.9	38	73	17	99	40	0	0	58	1.04
1182522--1182582	30	2.0	32	87	12	92	44	0	0	55	0.99
1188798--1188850	21	2.5	21	81	3	52	37	0	0	62	0.96
1188790--1188848	19	3.1	19	83	11	59	37	0	1	61	1.07
1190783--1190809	14	1.9	14	100	0	54	40	0	0	59	0.98
1190781--1190825	22	2.0	22	87	8	65	42	0	0	57	0.98
1191090--1191118	14	2.0	15	93	6	51	34	0	0	65	0.93
1191051--1191146	52	1.9	51	83	14	128	43	0	0	56	0.99
1191059--1191160	50	2.0	52	81	14	124	45	0	0	54	0.99
1191440--1191479	2	20.5	2	84	5	55	45	0	0	55	0.99
1191443--1191484	21	2.0	21	90	0	66	40	0	2	57	1.12
1192545--1192586	21	2.0	21	86	13	61	42	0	0	57	0.99
1192649--1192673	13	1.9	13	100	0	50	80	0	0	20	0.72
1198852--1198929	27	3.0	26	78	14	81	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1198859--1198955	46	2.1	46	83	7	117	48	0	1	50	1.07
1199052--1199110	30	2.0	30	87	6	86	50	0	1	47	1.11
1199086--1199134	24	2.0	24	84	0	62	61	0	2	36	1.08
1201211--1201284	32	2.3	31	81	9	78	52	2	1	43	1.23
1201811--1201835	8	3.1	8	100	0	50	76	0	0	24	0.80
1201573--1202197	216	3.0	208	87	8	966	51	8	5	34	1.55
1202720--1202749	15	1.9	16	93	6	53	33	0	6	60	1.23
1202790--1202864	16	4.9	15	75	16	64	38	1	5	54	1.31
1202791--1202873	30	2.7	30	85	7	96	38	1	6	54	1.33
1202822--1202873	16	3.2	16	83	0	68	42	0	5	51	1.25
1203850--1203881	16	2.0	16	100	0	64	37	0	0	62	0.95
1204078--1204116	20	2.0	20	85	10	53	48	0	2	48	1.15
1204110--1204159	25	2.0	25	88	11	77	56	0	0	44	0.99
1204423--1204449	2	13.5	2	100	0	54	0	48	0	51	1.00
1204449--1204477	2	14.5	2	100	0	58	48	0	0	51	1.00
1205927--1205968	22	1.9	22	100	0	84	21	9	19	50	1.75
1206484--1206535	19	2.5	22	77	22	60	63	0	0	36	0.95
1208611--1208690	30	2.7	31	81	16	98	45	1	1	52	1.16
1210899--1210932	16	2.1	16	88	0	50	50	0	0	50	1.00
1210914--1210961	22	2.2	22	88	7	71	60	0	0	39	0.97
1210889--1210955	28	2.4	28	80	14	75	55	0	0	44	0.99
1211965--1211997	11	3.1	11	91	4	50	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1212153--1212210	8	7.0	8	74	14	55	55	0	0	44	0.99
1212150--1212210	16	3.7	16	83	16	88	55	0	0	44	0.99
1212161--1212225	27	2.4	28	77	15	73	56	1	0	41	1.08
1212663--1212701	16	2.4	16	86	4	60	51	0	0	48	1.00
1212859--1212925	22	2.8	23	78	20	75	56	2	0	40	1.14
1212859--1212937	26	3.1	26	83	15	87	56	2	0	40	1.12
1212858--1212942	27	3.1	27	76	15	86	55	2	0	42	1.12
1213763--1213804	21	2.0	21	85	0	57	42	7	0	50	1.30
1220199--1220262	19	3.5	20	72	18	59	54	0	0	45	0.99
1220711--1220745	12	3.1	12	84	16	56	45	0	0	54	0.99
1221256--1221311	27	2.2	26	87	6	78	58	0	0	41	0.98
1221497--1221557	19	3.0	21	69	11	54	45	0	0	54	1.00
1222618--1222684	19	3.4	19	69	23	50	56	0	0	43	0.99
1223198--1223239	17	2.6	16	78	10	50	28	0	7	64	1.20
1223248--1223310	23	2.7	24	73	14	69	44	0	1	53	1.10
1225287--1225343	16	3.2	17	75	20	55	66	0	1	31	1.02
1225357--1225428	22	3.3	21	75	9	72	47	2	0	50	1.15
1225396--1225448	13	4.0	13	79	18	56	49	0	0	50	1.00
1225396--1225448	27	2.0	27	85	10	74	49	0	0	50	1.00
1225854--1225887	16	2.1	16	89	10	52	55	0	0	44	0.99
1226250--1226282	2	16.5	2	100	0	66	48	0	0	51	1.00
1226931--1226997	31	2.1	32	86	2	91	43	2	4	49	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1226938--1227009	31	2.3	31	82	2	81	44	2	5	47	1.41
1227897--1227949	28	2.0	26	85	14	72	41	0	0	58	0.98
1227947--1227996	24	2.0	24	88	11	75	62	0	0	38	0.96
1228458--1228635	14	12.4	14	65	23	61	60	1	1	36	1.14
1228470--1228522	24	2.2	24	83	6	72	64	1	0	33	1.05
1228455--1228535	19	4.2	19	76	7	67	61	3	1	33	1.21
1228495--1228535	21	2.0	21	85	0	55	60	2	2	34	1.23
1228536--1228623	27	3.1	27	77	19	65	59	0	1	39	1.05
1228574--1228636	26	2.4	27	82	12	78	63	0	0	36	0.95
1228923--1228975	21	2.5	21	84	9	63	66	0	0	33	0.92
1229371--1229409	21	1.9	20	84	5	51	61	0	0	38	0.96
1230488--1230524	19	1.9	19	88	0	56	35	0	5	59	1.20
1230488--1230528	10	4.2	10	84	6	57	36	0	4	58	1.20
1230750--1230787	16	2.4	16	90	0	58	50	0	0	50	1.00
1230754--1230796	7	5.9	7	81	10	50	44	0	0	55	0.99
1231642--1231691	23	2.2	22	82	7	55	46	8	0	46	1.32
1235757--1235783	13	2.1	13	100	0	54	22	0	44	33	1.53
1238826--1238896	8	8.2	9	76	14	53	30	0	0	69	0.89
1238861--1238921	8	7.1	8	73	10	50	19	1	1	77	0.95
1238859--1238891	15	2.3	15	89	5	50	21	0	0	78	0.75
1239569--1239604	16	2.1	18	90	10	58	33	0	0	66	0.92
1239564--1239650	13	6.5	14	70	21	62	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1240677--1240720	20	2.3	19	84	4	52	40	4	0	54	1.21
1240713--1240750	17	2.1	18	85	9	51	44	2	0	52	1.14
1241466--1241509	19	2.4	18	80	3	52	43	0	0	56	0.99
1241820--1242042	91	2.5	91	82	1	250	50	5	5	38	1.51
1242007--1242133	23	5.3	24	74	17	104	52	1	1	44	1.20
1242025--1242150	23	5.9	22	72	17	97	50	0	1	46	1.16
1241959--1242127	75	2.2	74	85	5	214	51	2	2	43	1.29
1242079--1242150	23	3.2	22	88	7	110	51	0	0	48	1.00
1241959--1242158	37	5.3	38	75	11	164	51	2	2	44	1.26
1242011--1242183	37	4.6	36	74	11	100	53	2	1	42	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21