genome.fa.s103.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold103
Parameters: 2 7 7 80 10 50 1000
Length:  2633873

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  15  of  21  ( 2458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1651052--1651133	32	2.6	33	84	7	116	43	0	0	56	0.99
1653554--1653845	36	8.3	36	76	6	274	23	26	23	26	2.00
1653554--1653845	72	4.1	71	79	7	308	23	26	23	26	2.00
1653572--1653845	138	2.0	138	84	1	361	23	27	23	25	2.00
1653713--1653881	36	4.7	36	74	2	88	23	28	24	23	1.99
1658683--1658721	18	2.1	19	85	4	53	69	0	5	25	1.09
1658699--1658769	32	2.2	33	87	2	99	53	1	4	40	1.29
1659495--1659565	2	35.5	2	94	0	124	1	1	47	49	1.18
1660316--1660722	219	1.9	219	93	0	706	34	13	19	31	1.91
1660601--1660845	123	2.0	123	94	0	427	32	15	24	28	1.95
1662068--1662126	23	2.6	23	82	15	77	40	0	0	59	0.97
1665988--1666025	19	2.0	20	89	5	60	44	0	0	55	0.99
1665988--1666025	20	1.9	19	85	15	51	44	0	0	55	0.99
1668495--1668532	10	3.2	12	82	17	53	28	0	0	71	0.87
1668486--1668532	23	2.0	23	88	12	69	31	0	0	68	0.90
1670041--1670085	17	2.7	17	86	3	56	57	0	0	42	0.98
1670684--1670731	25	2.0	24	84	11	64	41	0	0	58	0.98
1670816--1670882	24	2.9	23	81	14	68	64	1	4	29	1.22
1671068--1671146	33	2.6	30	78	11	81	54	3	3	37	1.37
1673985--1674009	12	2.1	12	100	0	50	28	24	16	32	1.96
1683240--1683296	15	3.7	15	75	11	62	52	0	1	45	1.11
1683533--1683643	17	6.5	17	67	20	63	52	0	0	46	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1683596--1683646	21	2.4	22	83	9	61	60	0	0	39	0.97
1683963--1684001	16	2.2	19	86	13	57	56	0	0	43	0.99
1685365--1685469	50	2.1	49	83	15	126	42	0	2	54	1.15
1685429--1685466	19	2.0	20	84	5	51	39	0	2	57	1.12
1685396--1685469	25	2.8	26	72	10	71	43	0	2	54	1.14
1688078--1688114	19	2.0	18	89	5	56	27	0	0	72	0.84
1688867--1688917	20	2.4	21	77	9	59	52	1	1	43	1.23
1688969--1689008	17	2.3	17	86	4	53	37	0	0	62	0.95
1688972--1689015	22	2.0	22	82	8	54	40	0	0	59	0.98
1688978--1689019	17	2.5	17	88	0	57	35	0	0	64	0.94
1689504--1689556	26	2.0	26	82	13	65	33	7	0	58	1.26
1694112--1694136	12	2.1	12	100	0	50	44	24	16	16	1.86
1698597--1698647	23	2.2	23	82	0	57	43	0	1	54	1.11
1698579--1698662	41	2.0	41	82	13	102	44	1	1	53	1.16
1698721--1698784	23	2.7	23	83	7	76	48	0	0	51	1.00
1699022--1699061	20	1.9	21	85	10	55	65	2	7	25	1.32
1699288--1699345	21	2.7	22	81	5	66	62	0	1	36	1.06
1700112--1700140	12	2.5	12	94	5	51	44	0	0	55	0.99
1700395--1700475	32	2.5	32	93	0	135	23	32	18	25	1.97
1700824--1700863	15	2.7	15	88	7	55	32	2	20	45	1.64
1710192--1710253	32	1.9	33	90	3	99	43	6	3	46	1.45
1712853--1712894	23	1.9	21	85	9	57	23	0	2	73	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1713488--1713533	17	2.8	16	80	6	56	50	0	0	50	1.00
1713830--1713891	32	1.9	33	87	9	92	50	1	0	48	1.10
1713885--1713937	27	2.0	27	82	7	65	37	0	0	62	0.96
1713866--1713916	20	2.5	20	81	9	59	39	1	0	58	1.09
1713868--1713919	21	2.5	20	73	14	52	38	1	0	59	1.08
1713917--1713965	21	2.4	21	82	3	55	40	0	0	59	0.98
1713887--1713964	39	2.0	39	82	9	97	39	0	0	60	0.97
1714201--1714229	7	4.1	7	100	0	58	41	0	0	58	0.98
1714403--1714501	21	4.6	22	68	22	50	38	2	0	59	1.09
1714426--1714494	11	7.2	10	74	19	51	33	1	0	65	1.02
1714389--1714497	36	3.0	36	80	10	98	37	1	0	60	1.07
1714426--1714543	57	2.1	58	81	13	140	31	2	0	65	1.12
1714655--1714687	10	3.1	11	86	8	50	45	0	0	54	0.99
1715339--1715373	3	11.7	3	100	0	70	34	0	0	65	0.93
1716635--1716677	16	2.7	15	83	16	52	69	0	0	30	0.88
1723131--1723156	3	8.7	3	100	0	52	69	0	0	30	0.89
1723236--1723300	32	2.0	32	82	5	78	47	0	0	52	1.00
1723233--1723284	23	2.4	22	75	15	54	50	0	0	50	1.00
1724513--1724654	70	2.0	70	98	0	275	33	4	3	58	1.34
1724503--1724646	22	6.0	24	69	22	90	31	2	3	61	1.27
1725563--1726513	517	1.9	512	80	5	1141	36	11	11	40	1.78
1727997--1728044	18	2.5	19	83	6	62	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1728347--1728392	11	4.5	11	76	15	53	60	0	0	39	0.97
1728335--1728427	30	3.1	30	87	3	134	56	0	2	40	1.11
1728932--1729003	24	3.2	22	75	14	58	48	0	0	51	1.00
1729867--1729937	23	3.0	23	75	8	63	52	1	1	45	1.18
1732154--1732286	50	2.7	50	88	2	196	29	19	20	30	1.97
1736503--1736664	50	3.2	50	83	0	207	36	17	14	30	1.91
1736690--1736967	50	5.6	50	83	2	299	35	17	16	29	1.93
1736556--1736797	133	1.8	133	88	1	369	36	16	14	31	1.90
1736495--1736847	183	1.9	183	84	2	476	34	16	16	31	1.92
1736689--1736995	100	3.1	100	81	2	339	38	17	14	29	1.90
1736690--1736967	150	1.9	150	83	3	371	35	17	16	29	1.93
1738147--1738190	19	2.3	19	80	0	52	36	0	2	61	1.09
1738440--1738484	2	22.5	2	100	0	90	51	0	0	48	1.00
1741976--1742040	32	2.0	32	96	0	121	47	6	4	41	1.49
1744500--1744527	2	14.0	2	100	0	56	0	0	50	50	1.00
1746480--1746548	33	2.1	33	97	0	129	27	20	8	43	1.81
1746843--1746982	67	2.1	67	86	2	192	22	24	9	43	1.82
1751929--1751961	13	2.4	14	85	5	50	24	27	12	36	1.91
1756021--1756077	2	28.5	2	92	0	96	45	0	3	50	1.18
1768761--1768805	24	1.9	23	86	4	63	40	0	2	57	1.11
1768799--1768836	17	2.1	18	85	9	51	28	2	2	65	1.19
1771731--1771769	19	2.1	17	86	13	51	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1772103--1772161	26	2.3	25	88	11	84	50	0	0	49	1.00
1772564--1772598	17	2.1	17	88	0	52	54	2	0	42	1.15
1772550--1772621	37	2.0	37	81	13	87	54	4	0	41	1.20
1776715--1776778	25	2.5	26	82	10	78	42	0	0	57	0.98
1776696--1776780	35	2.5	33	83	14	102	43	0	0	56	0.99
1776717--1776784	16	4.1	16	71	23	52	44	0	0	55	0.99
1776754--1776861	44	2.5	43	79	10	114	48	0	0	50	1.07
1777706--1777744	2	19.5	2	100	0	78	0	48	0	51	1.00
1780203--1780269	31	2.2	30	79	12	75	47	0	0	52	1.00
1780218--1780291	27	2.5	30	79	14	84	47	0	0	52	1.00
1780510--1780584	10	7.0	11	72	17	59	58	0	0	41	0.98
1780642--1780674	12	2.6	13	90	4	50	45	0	0	54	0.99
1784560--1784605	23	2.0	23	95	0	83	56	2	8	32	1.42
1785331--1785373	17	2.7	15	83	13	59	44	0	0	55	0.99
1785336--1785377	17	2.5	17	88	0	66	40	0	0	59	0.97
1785336--1785389	19	2.9	19	89	5	76	40	1	0	57	1.09
1791783--1791829	12	4.2	11	78	10	51	29	0	0	70	0.88
1791732--1791843	23	4.7	23	74	11	82	34	0	0	63	1.07
1791788--1791832	11	4.0	11	82	5	54	28	0	0	71	0.87
1791797--1791842	17	2.6	18	77	19	51	28	0	0	71	0.86
1796735--1796849	18	6.4	18	67	22	64	57	2	0	39	1.19
1796701--1796889	5	37.0	5	63	17	52	57	2	2	38	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1797944--1797987	22	2.0	22	82	13	54	54	0	0	45	0.99
1798147--1798172	2	13.0	2	100	0	52	50	0	0	50	1.00
1799645--1799675	15	2.0	16	93	6	55	58	0	0	41	0.98
1799844--1799881	3	12.7	3	100	0	76	68	0	0	31	0.90
1800330--1800374	16	2.9	16	80	9	58	33	0	0	66	0.92
1800356--1800399	18	2.4	19	81	11	56	36	0	0	63	0.95
1800670--1800709	18	2.3	17	87	12	55	70	0	5	25	1.08
1800862--1800900	18	2.2	17	86	4	51	53	0	0	46	1.00
1800922--1800953	15	2.0	17	88	11	50	62	0	3	34	1.11
1801451--1801492	17	2.5	17	85	14	61	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21