genome.fa.s103.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold103
Parameters: 2 7 7 80 10 50 1000
Length:  2633873

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  18  of  21  ( 2458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1993740--1993797	30	1.9	31	86	10	84	41	0	1	56	1.09
1993812--1993868	16	3.7	15	84	13	71	64	0	0	35	0.93
1993812--1993871	31	1.9	32	89	3	95	65	0	0	35	0.93
1993811--1993881	18	4.3	18	77	16	66	61	0	0	38	0.96
1993911--1993950	2	20.0	2	84	0	53	47	0	0	52	1.00
1994264--1994325	23	2.7	24	71	11	58	67	3	0	29	1.06
1994263--1994303	20	2.0	21	85	4	57	70	4	0	24	1.06
1995103--1995159	23	2.4	23	77	13	71	52	0	0	47	1.00
1995534--1995575	3	14.0	3	100	0	84	66	0	0	33	0.92
2002509--2002552	2	22.5	2	95	4	81	47	0	0	52	1.00
2006804--2006850	16	2.8	17	84	9	53	29	2	0	68	1.02
2006823--2006857	16	2.2	16	89	0	52	37	2	0	60	1.12
2007184--2007209	2	13.0	2	100	0	52	50	0	0	50	1.00
2011204--2011260	20	2.6	22	78	13	73	66	0	0	33	0.92
2014997--2015048	24	2.3	22	78	15	61	32	1	3	61	1.25
2015023--2015055	15	2.2	15	89	10	50	36	0	0	63	0.95
2015518--2015555	18	2.2	17	90	4	58	42	0	0	57	0.98
2015478--2015555	17	4.4	18	73	12	72	44	0	0	55	0.99
2018779--2018804	5	5.2	5	100	0	52	61	19	0	19	1.35
2021249--2021286	20	2.0	20	89	5	60	63	0	0	36	0.95
2024620--2024656	4	9.0	4	94	5	65	24	0	0	75	0.80
2029974--2029998	13	1.9	13	100	0	50	40	8	0	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2037260--2037327	19	3.7	19	74	7	68	47	0	1	51	1.09
2037367--2037418	15	3.5	15	80	15	63	71	0	0	28	0.87
2037368--2037416	13	3.5	13	83	10	53	71	0	0	28	0.86
2037514--2037538	2	12.5	2	100	0	50	48	0	0	52	1.00
2037858--2037884	10	2.7	10	100	0	54	0	22	48	29	1.51
2038243--2038267	12	2.1	12	100	0	50	44	0	0	56	0.99
2038966--2039009	14	3.4	14	70	23	51	65	2	0	31	1.05
2038965--2039017	24	2.2	24	96	0	97	64	1	0	33	1.05
2039707--2039735	2	14.5	2	100	0	58	0	51	0	48	1.00
2041398--2041438	2	20.5	2	87	0	55	51	4	0	43	1.23
2041593--2041665	20	3.5	20	74	15	67	47	0	0	52	1.00
2041678--2041758	15	5.4	15	74	12	53	48	1	1	49	1.17
2042855--2042909	23	2.4	23	81	6	58	45	0	0	54	0.99
2043041--2043109	22	3.3	20	75	20	61	40	1	1	56	1.17
2043033--2043118	24	3.5	24	71	14	68	40	1	1	56	1.14
2043086--2043140	19	3.0	20	79	12	64	36	0	0	63	0.95
2046826--2046892	19	3.7	19	69	18	63	38	0	1	59	1.06
2046826--2046892	34	2.0	34	88	5	100	38	0	1	59	1.06
2047804--2047842	20	1.9	21	89	5	62	46	2	0	51	1.14
2048070--2048143	32	2.3	32	80	17	82	50	0	0	50	1.00
2048132--2048196	5	12.0	5	73	20	51	36	3	0	60	1.13
2048046--2048196	82	1.9	81	79	12	175	42	1	1	54	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2048132--2048177	17	2.7	17	83	10	58	36	2	0	60	1.09
2048128--2048177	11	4.4	11	83	16	66	38	2	0	60	1.09
2048134--2048196	28	2.3	26	80	17	74	36	3	0	60	1.13
2048128--2048196	22	3.1	22	83	10	70	37	2	0	59	1.12
2048955--2048989	15	2.2	16	90	5	54	42	0	0	57	0.99
2050158--2050190	2	16.5	2	100	0	66	51	0	0	48	1.00
2053196--2053233	12	3.2	12	88	11	60	57	0	2	39	1.12
2054005--2054058	23	2.3	24	74	3	56	51	0	0	48	1.00
2055157--2055205	15	3.1	17	74	14	50	42	0	2	55	1.11
2056158--2056192	18	1.9	18	88	0	52	51	2	20	25	1.61
2058588--2058615	4	7.0	4	100	0	56	75	0	0	25	0.81
2060593--2060617	3	8.3	3	100	0	50	64	0	0	36	0.94
2060635--2060668	18	1.9	18	88	5	52	73	0	0	26	0.83
2060641--2060674	16	2.1	16	89	10	52	70	0	0	29	0.87
2061071--2061113	18	2.2	18	84	12	50	41	0	11	46	1.40
2061803--2061859	23	2.6	21	80	8	60	33	3	0	63	1.12
2065114--2065176	25	2.5	24	80	12	63	28	0	6	65	1.17
2065485--2065559	26	3.0	24	84	7	87	52	0	1	46	1.09
2068873--2068904	2	16.0	2	100	0	64	0	50	0	50	1.00
2070248--2070315	32	2.1	31	83	5	82	54	0	10	35	1.35
2071021--2071079	4	14.5	4	92	3	100	76	0	23	0	0.79
2071016--2071106	8	10.6	8	80	13	74	78	1	20	0	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2071560--2071618	23	2.6	23	78	7	68	25	1	5	67	1.20
2071560--2071593	11	2.9	12	82	8	52	26	0	0	73	0.83
2071986--2072024	11	3.6	10	83	16	51	84	2	12	0	0.72
2072101--2072141	18	2.2	20	82	8	50	26	2	9	60	1.40
2072525--2072567	16	2.8	16	86	6	63	41	0	0	58	0.98
2072820--2072857	2	19.0	2	94	0	67	50	2	0	47	1.15
2077105--2077339	34	7.0	33	81	7	267	41	24	8	25	1.82
2077105--2077339	101	2.3	101	86	1	337	41	24	8	25	1.82
2081414--2081449	2	18.5	2	94	5	65	0	47	0	52	1.00
2082747--2082842	48	2.0	48	93	0	165	37	15	12	34	1.85
2085559--2085590	3	10.7	3	93	0	55	62	3	0	34	1.11
2085929--2085974	7	6.9	7	82	9	60	32	0	0	67	0.91
2085929--2085974	13	3.5	13	78	3	56	32	0	0	67	0.91
2089009--2089055	24	2.0	24	83	8	60	59	0	25	14	1.36
2090201--2090254	19	2.8	20	83	8	67	35	11	0	53	1.36
2097642--2097676	19	1.9	18	88	11	54	74	0	5	20	1.02
2098322--2098362	21	2.0	21	90	0	64	56	0	0	43	0.99
2098366--2098445	30	2.7	30	81	12	94	56	2	2	38	1.26
2100288--2100321	6	5.7	6	86	13	52	11	0	2	85	0.71
2103602--2103652	25	2.0	26	85	14	70	56	5	0	37	1.23
2104249--2104291	20	2.2	20	83	8	52	55	2	4	37	1.33
2106729--2106764	2	18.0	2	94	0	63	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2107398--2107453	13	4.2	13	76	15	51	62	0	1	35	1.06
2107868--2107912	11	4.0	11	80	5	54	35	2	0	62	1.08
2107892--2107934	15	2.9	15	80	13	54	44	4	0	51	1.22
2107869--2107920	23	2.3	23	79	0	59	40	1	0	57	1.10
2108222--2108285	23	3.0	21	76	19	62	46	1	1	50	1.20
2108944--2108989	23	1.9	25	86	8	69	43	0	2	54	1.12
2108974--2109031	19	3.1	18	73	14	55	37	0	0	62	0.96
2108967--2109034	35	1.9	35	85	11	95	39	0	1	58	1.07
2110191--2110235	19	2.6	18	83	16	60	51	0	0	48	1.00
2110766--2110803	20	1.9	20	89	10	60	39	5	0	55	1.23
2111165--2111203	20	2.0	19	85	5	51	43	10	10	35	1.73
2113008--2113051	17	2.6	17	85	0	52	43	2	6	47	1.42
2114422--2114558	72	1.9	73	87	4	206	38	6	17	37	1.76
2114789--2114830	17	2.8	14	83	16	57	35	0	0	64	0.94
2114788--2114833	15	2.9	16	87	12	69	36	0	0	63	0.95
2115240--2115683	220	2.0	223	93	2	768	47	9	5	37	1.59
2116103--2116135	2	16.5	2	100	0	66	51	0	0	48	1.00
2116135--2116166	2	16.0	2	100	0	64	50	0	50	0	1.00
2119869--2119914	17	2.6	17	83	10	58	43	4	10	41	1.59
2122784--2122842	28	2.1	28	87	6	84	49	0	0	50	1.00
2123489--2123518	3	9.7	3	92	7	51	70	0	0	30	0.88
2127342--2127384	18	2.4	18	84	7	52	2	11	32	53	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2131007--2131044	11	3.2	12	85	11	51	2	7	7	81	0.96
2131363--2131413	24	2.1	25	85	3	68	37	0	1	60	1.08
2131672--2131730	2	29.5	2	83	13	77	49	3	0	47	1.18
2137475--2137508	3	11.3	3	100	0	68	32	0	0	67	0.91
2144638--2144698	25	2.4	26	78	13	72	34	0	0	65	0.93
2145513--2145551	21	1.9	20	89	5	60	56	0	2	41	1.13
2154419--2154455	3	12.3	3	88	0	56	62	0	32	5	1.18
2156833--2156867	6	5.8	6	96	0	52	34	51	8	5	1.56
2156827--2156936	51	2.2	51	81	0	121	32	49	9	9	1.66
2163661--2163704	22	2.1	21	83	8	54	47	4	2	45	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21