genome.fa.s103.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold103
Parameters: 2 7 7 80 10 50 1000
Length:  2633873

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  6  of  21  ( 2458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
612670--612718	22	2.2	22	85	7	64	40	6	8	44	1.59
612774--612819	17	2.7	18	83	10	60	54	0	0	45	0.99
612914--612960	21	2.3	20	89	7	76	34	0	0	65	0.93
616493--616518	2	13.0	2	100	0	52	50	0	0	50	1.00
619827--619851	1	25.0	1	100	0	50	100	0	0	0	0.00
620695--620772	3	24.3	3	76	21	70	29	2	1	66	1.13
620737--620813	10	7.5	10	73	16	50	33	5	0	61	1.19
620719--620790	37	1.9	37	88	0	108	27	6	1	63	1.28
620750--620806	21	2.8	21	73	5	55	35	5	0	59	1.20
620698--620813	31	3.9	31	75	12	93	31	4	0	62	1.20
621827--621871	23	2.0	23	90	0	72	28	2	0	68	1.01
622899--622950	26	2.0	27	81	11	63	42	1	1	53	1.23
623102--623153	19	2.7	19	84	3	68	32	0	1	65	1.04
623090--623146	26	2.2	26	87	0	78	28	0	1	70	0.98
623226--623276	6	8.0	6	77	18	50	31	0	1	66	1.03
623226--623274	13	3.7	13	81	5	53	28	0	2	69	1.00
623492--623527	18	2.0	18	89	10	56	25	0	2	72	0.98
624129--624175	25	2.0	24	84	12	62	42	0	0	57	0.98
625284--625322	21	1.9	21	94	5	71	25	12	0	61	1.31
625816--625866	19	2.7	20	78	9	52	50	0	0	49	1.00
625820--625863	19	2.4	19	80	3	54	52	0	0	47	1.00
626133--626171	18	2.2	18	86	13	55	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
626158--626214	22	2.7	22	75	8	73	42	0	1	56	1.10
626887--626957	29	2.4	28	78	21	74	43	0	0	56	0.99
628072--628126	28	2.0	28	82	7	67	34	0	9	56	1.31
628131--628185	17	3.4	17	70	25	55	40	3	1	54	1.28
628495--628538	16	2.8	16	86	6	63	61	4	0	34	1.16
628850--628912	30	2.1	30	82	11	76	31	9	1	57	1.40
629169--629247	31	2.5	31	80	8	81	62	6	2	29	1.33
638261--638289	15	1.9	15	100	0	58	51	0	0	48	1.00
638567--638591	1	25.0	1	100	0	50	100	0	0	0	0.00
639205--639274	29	2.6	26	75	16	63	37	1	2	58	1.22
640780--640805	2	13.0	2	100	0	52	50	0	0	50	1.00
643315--643362	20	2.4	21	82	6	55	39	2	4	54	1.32
643345--643392	22	2.2	22	88	7	71	54	0	0	45	0.99
644039--644076	20	1.9	20	89	10	60	47	0	0	52	1.00
645299--645332	17	2.1	17	88	5	52	67	0	0	32	0.91
645522--645569	24	2.0	24	87	0	69	6	10	12	70	1.32
646283--646324	10	4.2	10	82	8	50	33	0	0	66	0.92
646278--646333	19	2.9	19	81	7	60	32	1	0	66	1.03
646278--646320	11	4.2	10	82	14	52	30	2	0	67	1.03
646390--646421	16	2.0	16	100	0	64	18	6	12	62	1.50
646555--646589	16	2.1	17	89	5	54	40	0	2	57	1.14
646948--646976	3	9.7	3	100	0	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647604--647649	21	2.1	23	88	11	71	52	0	0	47	1.00
647711--647776	33	2.0	33	88	5	98	46	4	3	45	1.38
650834--650900	21	3.2	21	78	16	59	41	0	1	56	1.08
650852--650900	21	2.4	21	86	10	66	42	0	0	57	0.99
650839--650906	23	2.8	23	71	22	59	44	0	0	55	0.99
651529--651557	2	14.5	2	100	0	58	48	0	0	51	1.00
651656--651709	28	1.9	28	96	0	99	22	9	31	37	1.86
652739--652764	3	8.7	3	100	0	52	65	0	0	34	0.93
652763--652806	3	14.7	3	100	0	88	34	0	0	65	0.93
654440--654493	25	2.3	25	81	12	71	53	0	0	46	1.00
654705--654736	2	16.0	2	100	0	64	0	50	0	50	1.00
655169--655201	2	16.5	2	100	0	66	48	0	0	51	1.00
656886--656927	22	2.0	22	86	13	61	45	0	0	54	0.99
657108--657264	84	1.9	84	91	2	262	31	15	24	28	1.96
657776--657840	18	3.6	18	76	19	64	47	0	1	50	1.10
657754--657830	25	3.0	26	80	16	97	46	0	0	53	1.00
657781--657850	37	2.0	36	83	13	92	50	0	1	48	1.09
658029--658065	2	18.5	2	100	0	74	48	0	0	51	1.00
658122--658162	2	20.5	2	84	0	55	53	4	0	41	1.22
658122--658158	14	2.6	14	95	0	65	54	5	0	40	1.24
660276--660306	11	2.9	11	95	4	55	29	0	0	70	0.87
660340--660387	17	2.8	17	78	15	53	39	2	2	56	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660688--660721	17	1.9	18	88	5	52	44	0	2	52	1.16
660737--660794	19	2.9	19	80	16	57	39	0	0	60	0.97
660753--660834	26	3.2	26	68	13	62	48	0	0	51	1.00
660794--660835	20	2.0	20	86	4	57	54	0	0	45	0.99
661403--661446	20	2.3	19	84	7	61	40	4	4	50	1.43
663037--663134	32	3.5	27	71	20	69	38	2	1	58	1.17
663048--663122	32	2.3	33	86	4	98	40	2	1	56	1.22
663086--663175	39	2.3	39	85	9	114	30	2	2	65	1.16
663113--663147	11	3.1	11	95	4	61	25	0	2	71	1.00
663795--663871	25	2.9	26	70	12	68	53	1	0	45	1.08
663785--663858	37	1.9	39	86	10	109	47	1	0	51	1.09
665205--665241	11	3.4	11	88	0	56	67	0	0	32	0.91
669743--669773	2	15.5	2	100	0	62	48	0	0	51	1.00
669945--669994	7	6.7	7	84	11	55	46	0	0	54	1.00
670527--670624	31	3.4	27	72	19	74	60	1	0	38	1.04
670519--670593	31	2.3	31	84	6	87	58	1	0	40	1.06
670558--670632	17	4.1	17	73	19	62	61	0	0	38	0.96
673759--673967	105	2.0	104	95	0	373	30	23	11	33	1.91
674589--674631	20	2.0	22	86	8	63	39	0	0	60	0.97
674573--674633	16	3.4	16	74	23	59	40	0	0	59	0.98
675389--675470	33	2.4	34	79	6	85	51	1	2	45	1.22
675538--675572	17	2.1	16	89	5	52	48	2	0	48	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
684253--684286	16	2.1	16	94	0	59	35	5	2	55	1.39
684893--684928	18	2.0	18	88	0	54	41	2	13	41	1.59
685401--685441	2	20.5	2	84	0	55	46	7	0	46	1.30
690036--690074	21	1.9	21	85	15	55	61	0	0	38	0.96
691984--692020	18	2.0	19	89	5	58	51	0	0	48	1.00
692710--692766	20	3.0	18	80	10	60	38	10	1	49	1.48
693289--693333	18	2.5	18	82	10	56	57	0	2	40	1.11
694515--694570	18	2.8	22	74	20	59	50	0	1	48	1.11
694534--694573	16	2.3	18	87	8	57	50	0	0	50	1.00
694842--694912	5	14.2	5	72	16	58	61	0	1	36	1.05
694842--694912	11	7.1	10	75	15	58	61	0	1	36	1.05
694833--695007	20	8.8	20	66	22	75	56	0	1	41	1.14
696866--696923	17	3.5	18	78	21	65	53	0	0	46	1.00
697123--697217	3	32.3	3	87	8	142	65	1	1	32	1.07
697216--697244	3	9.7	3	100	0	58	34	0	0	65	0.93
698643--698667	13	1.9	13	100	0	50	40	8	12	40	1.72
699389--699449	20	3.2	20	81	6	72	32	27	0	39	1.57
707550--707587	20	1.9	20	100	0	76	31	18	10	39	1.85
707552--707603	20	2.7	20	87	3	70	34	19	13	32	1.90
707576--707638	33	1.9	33	87	3	92	39	15	11	33	1.83
708895--708927	16	2.1	16	94	5	59	60	36	0	3	1.12
709011--709043	16	2.1	16	94	5	59	60	36	0	3	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708834--709062	116	2.0	116	97	1	433	47	28	10	12	1.75
709210--709263	22	2.5	22	84	6	56	55	5	1	37	1.34
710490--710545	20	2.9	19	82	10	62	51	1	1	44	1.22
710715--710752	16	2.4	16	90	0	58	39	26	18	15	1.91
714314--714372	30	2.0	30	82	0	73	44	3	5	47	1.42
714607--714654	22	2.2	22	85	3	62	50	2	0	47	1.12
714791--714823	12	2.6	13	90	4	50	54	0	0	45	0.99
715837--715884	16	2.9	16	71	3	51	35	2	8	54	1.42
716575--716781	109	1.9	110	84	1	281	36	14	14	34	1.87
716871--716914	16	2.9	16	80	6	56	36	0	0	63	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21