genome.fa.s103.2.7.7.80.10.50.1000.17.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold103
Parameters: 2 7 7 80 10 50 1000
Length:  2633873

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  17  of  21  ( 2458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1907497--1907524	2	14.0	2	100	0	56	50	0	50	0	1.00
1909358--1909422	26	2.5	24	75	20	60	38	1	3	56	1.24
1909429--1909491	19	3.3	20	83	14	80	55	0	0	44	0.99
1909425--1909488	20	2.9	22	77	20	62	54	0	0	45	0.99
1909925--1909991	22	3.0	22	72	12	64	37	0	1	61	1.05
1909968--1910037	12	5.6	12	74	16	54	40	5	0	54	1.24
1910193--1910255	21	3.1	20	81	18	69	36	0	0	63	0.95
1910195--1910255	22	2.9	22	77	15	67	37	0	0	62	0.96
1910202--1910244	22	2.0	22	90	9	70	39	0	0	60	0.97
1911159--1911204	17	2.6	19	80	19	55	47	0	0	52	1.00
1911447--1911485	11	3.7	11	86	6	55	20	0	2	76	0.90
1912046--1912075	10	3.1	10	95	4	53	26	0	0	73	0.84
1912029--1912070	13	3.2	13	83	6	50	33	0	0	66	0.92
1912411--1912448	12	3.2	12	85	3	51	68	0	2	28	1.03
1913063--1913099	10	3.2	12	81	18	51	37	0	0	62	0.96
1913183--1913228	17	2.5	19	80	16	53	60	0	2	36	1.09
1913539--1913564	9	2.9	9	100	0	52	34	0	11	53	1.37
1915185--1915284	25	3.8	25	71	16	69	43	0	1	56	1.06
1916693--1916731	18	2.3	16	86	8	51	12	64	10	12	1.51
1916705--1916765	12	4.9	12	78	7	50	9	65	8	16	1.45
1916727--1916831	15	6.5	15	77	15	77	10	64	6	18	1.45
1916677--1916769	47	2.0	46	82	2	114	10	63	8	17	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1916735--1916794	18	3.4	18	81	6	70	6	65	6	21	1.40
1919025--1919074	17	2.9	17	75	16	50	60	4	0	36	1.16
1919239--1919283	16	2.8	16	77	9	56	40	0	2	57	1.11
1919502--1919545	15	2.9	15	86	3	52	45	2	0	52	1.13
1922450--1922557	54	2.0	54	94	0	189	33	21	27	17	1.96
1924066--1924640	225	2.5	229	80	3	638	27	24	22	25	2.00
1924603--1925067	228	2.0	227	79	3	497	31	21	24	22	1.98
1926383--1926416	18	1.9	17	94	5	59	47	0	0	52	1.00
1926373--1926416	18	2.3	20	84	7	56	47	0	0	52	1.00
1926399--1926474	26	3.0	23	77	22	82	55	1	0	43	1.08
1926631--1926664	17	1.9	18	88	5	52	41	5	2	50	1.42
1926857--1926885	2	14.5	2	100	0	58	0	48	0	51	1.00
1927315--1927481	58	2.9	58	86	2	230	31	4	4	58	1.40
1927737--1927767	2	15.5	2	93	0	53	48	3	0	48	1.17
1928092--1928133	2	21.0	2	100	0	84	0	50	0	50	1.00
1928272--1928315	18	2.3	19	80	7	54	40	0	4	54	1.21
1928354--1928392	15	2.5	16	79	8	53	56	0	0	43	0.99
1928639--1928692	21	2.5	21	79	8	65	55	1	0	42	1.10
1929867--1929929	34	1.9	33	84	9	85	28	1	1	68	1.08
1930165--1930508	177	1.9	177	82	2	422	28	18	21	31	1.97
1930415--1930599	84	2.2	82	80	6	212	28	17	22	32	1.96
1930543--1930652	57	2.0	54	89	5	166	27	19	23	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1930607--1931059	87	5.3	87	86	2	517	26	16	20	35	1.94
1931712--1931763	12	4.3	12	80	4	61	44	0	0	55	0.99
1931780--1931845	21	3.2	20	72	14	53	57	1	0	40	1.08
1931815--1931897	11	7.9	11	71	18	61	48	2	0	49	1.14
1931841--1931899	19	2.9	21	82	12	77	47	1	0	50	1.11
1933228--1933288	2	30.5	2	100	0	122	50	0	49	0	1.00
1940354--1940397	22	2.0	22	82	8	54	54	0	2	43	1.12
1946303--1946358	21	2.7	22	81	10	66	41	0	0	58	0.98
1946317--1946358	22	2.0	21	90	4	66	42	0	0	57	0.99
1947236--1947299	30	2.2	29	76	15	71	51	0	1	46	1.10
1947237--1947303	29	2.2	31	76	12	77	50	0	1	47	1.10
1949349--1949395	24	2.0	24	82	0	58	46	0	0	53	1.00
1950223--1950311	46	1.9	47	84	15	123	48	1	0	50	1.08
1951881--1951937	26	2.2	24	85	11	78	49	3	1	45	1.29
1951998--1952096	19	5.6	20	69	28	64	46	0	0	53	1.00
1952049--1952105	8	7.2	8	75	16	57	45	0	0	54	0.99
1952038--1952101	32	2.0	33	90	3	103	48	0	0	51	1.00
1953194--1953280	15	5.6	15	73	16	61	44	0	1	54	1.07
1954093--1954192	39	2.7	37	78	15	100	48	0	0	52	1.00
1954268--1954301	17	1.9	18	94	5	61	50	0	0	50	1.00
1954712--1954788	32	2.5	29	80	14	84	45	1	1	51	1.17
1955122--1955149	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1955353--1955390	19	2.0	19	89	0	58	28	2	0	68	1.03
1956816--1956869	21	2.6	21	82	5	56	46	0	0	53	1.00
1956863--1956909	21	2.2	21	88	7	69	59	0	0	40	0.97
1956949--1956990	20	2.1	20	86	0	57	64	0	0	35	0.94
1961231--1961300	16	4.6	16	71	20	53	52	1	0	45	1.09
1961238--1961295	27	2.1	27	81	6	64	51	1	0	46	1.11
1966772--1966802	11	2.8	11	100	0	62	54	0	9	35	1.33
1967143--1967177	2	17.5	2	100	0	70	51	48	0	0	1.00
1969193--1969241	23	2.2	21	85	7	62	55	2	0	42	1.11
1969228--1969271	21	2.1	21	83	8	54	56	4	0	38	1.20
1969447--1969491	21	2.0	21	83	8	54	42	0	2	55	1.12
1969681--1969710	2	15.0	2	100	0	60	0	50	0	50	1.00
1970209--1970242	2	17.0	2	100	0	68	50	0	0	50	1.00
1970464--1970845	190	2.0	190	91	1	613	33	13	15	37	1.87
1974243--1974275	7	4.6	7	96	3	57	72	0	0	27	0.85
1974243--1974277	14	2.4	15	90	9	63	71	0	0	28	0.86
1974923--1974957	16	2.1	18	89	10	56	31	0	0	68	0.90
1974910--1974999	31	2.8	33	77	14	91	37	0	0	62	0.96
1974913--1974964	18	2.7	19	80	14	63	34	0	0	65	0.93
1974940--1974997	25	2.3	26	75	3	64	37	0	0	62	0.96
1975033--1975104	12	5.9	12	76	12	58	47	0	1	51	1.09
1976235--1976273	3	13.0	3	100	0	78	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1976600--1976634	2	17.5	2	100	0	70	51	0	0	48	1.00
1983136--1983173	9	4.2	9	83	10	51	36	0	0	63	0.95
1983139--1983187	17	2.8	17	81	9	55	38	0	2	59	1.09
1983135--1983210	23	3.4	21	79	13	64	39	1	3	55	1.27
1983148--1983210	23	2.8	23	79	13	69	39	1	4	53	1.31
1983651--1983676	2	13.0	2	100	0	52	50	0	0	50	1.00
1985727--1985778	19	2.8	19	78	16	65	46	0	0	53	1.00
1985788--1985852	28	2.3	28	84	7	87	44	1	0	53	1.09
1985730--1985857	9	14.1	9	68	17	52	42	0	0	56	1.10
1986837--1986903	15	4.5	15	71	14	50	52	0	0	47	1.00
1986838--1986893	18	3.1	19	73	21	57	48	0	0	51	1.00
1986844--1986893	21	2.3	22	83	10	59	48	0	0	52	1.00
1987360--1987438	21	3.6	22	75	14	74	46	0	1	51	1.08
1987363--1987451	30	2.9	30	75	21	87	47	0	1	51	1.08
1987358--1987463	22	4.9	22	76	12	87	46	0	0	52	1.06
1987361--1987462	21	5.0	21	72	18	58	46	0	0	52	1.07
1987355--1987479	61	2.1	58	80	15	141	47	0	1	51	1.10
1987445--1987498	19	2.9	18	74	15	56	42	1	3	51	1.30
1987520--1987585	23	3.0	23	82	10	77	53	7	0	39	1.30
1987863--1987907	22	1.9	25	86	13	69	64	0	2	33	1.06
1988039--1988072	2	17.0	2	93	0	59	47	0	2	50	1.16
1988817--1988878	17	3.6	17	79	10	65	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1989003--1989040	20	1.9	20	100	0	76	31	21	26	21	1.98
1989180--1989245	19	3.2	21	75	16	68	45	0	0	54	0.99
1989180--1989259	41	1.9	41	80	16	94	46	0	0	53	1.00
1989283--1989329	23	2.0	23	88	8	69	34	0	0	65	0.93
1989407--1989469	25	2.6	25	79	20	73	58	0	0	41	0.98
1989508--1989536	14	2.0	15	93	6	51	41	0	0	58	0.98
1992943--1992986	24	1.9	22	86	9	61	59	4	0	36	1.18
1992995--1993050	22	2.6	23	77	8	64	48	0	0	51	1.00
1993031--1993069	17	2.2	19	86	9	55	51	0	0	48	1.00
1993119--1993198	30	2.5	32	71	20	78	43	1	1	53	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21