genome.fa.s103.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold103
Parameters: 2 7 7 80 10 50 1000
Length:  2633873

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   

This is table  9  of  21  ( 2458 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
903547--903606	31	1.9	31	86	10	86	50	1	1	46	1.21
904044--904100	30	1.9	30	96	0	105	43	1	8	45	1.45
904038--904108	30	2.4	30	82	0	97	46	1	8	43	1.42
904494--904544	22	2.3	22	82	0	57	56	7	0	35	1.28
904549--904612	32	2.1	32	82	8	80	39	3	1	56	1.25
906305--906367	3	21.0	3	100	0	126	66	0	0	33	0.92
906404--906464	19	3.2	18	70	9	50	34	1	6	57	1.34
906877--906914	16	2.2	16	90	9	58	47	0	2	50	1.15
907658--907708	16	3.1	17	73	18	54	54	5	5	33	1.48
907808--907854	15	3.0	16	81	12	62	57	2	0	40	1.11
907819--907863	23	2.0	22	87	12	65	57	0	0	42	0.98
907805--907854	16	3.3	15	78	10	57	60	2	0	38	1.09
907793--907854	32	2.0	32	84	12	85	58	3	0	38	1.15
907803--907875	32	2.3	31	80	15	78	57	1	0	41	1.07
908253--908322	10	6.4	11	75	18	58	48	0	0	51	1.00
908564--908592	2	14.5	2	100	0	58	48	0	0	51	1.00
908943--909006	32	2.0	33	84	3	85	42	1	0	56	1.09
914914--914943	2	15.0	2	100	0	60	50	0	0	50	1.00
915291--915319	2	14.5	2	100	0	58	48	0	0	51	1.00
915956--916001	19	2.6	18	86	10	60	43	0	2	54	1.12
915963--916071	39	2.6	42	76	14	100	44	1	0	52	1.18
915987--916072	23	3.3	26	72	22	74	46	2	0	51	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
916489--916517	2	14.5	2	100	0	58	51	0	0	48	1.00
917288--917322	15	2.2	16	90	5	54	17	11	22	48	1.79
918003--918038	18	2.1	18	89	5	56	41	11	0	47	1.39
918040--918074	16	2.2	16	90	10	54	54	0	0	45	0.99
919592--919646	19	2.9	18	76	7	56	34	1	0	63	1.05
920539--920578	14	2.7	15	84	7	55	42	0	0	57	0.98
922144--922193	17	2.9	18	73	8	50	50	0	0	50	1.00
922225--922261	17	2.3	17	86	9	51	48	2	0	48	1.15
922285--922346	2	31.0	2	93	0	106	48	0	1	50	1.10
926491--926536	10	4.5	10	81	5	56	60	4	0	34	1.16
927109--927161	18	2.9	18	76	15	56	41	0	0	58	0.98
927128--927168	20	2.0	20	86	9	57	51	0	0	48	1.00
927147--927197	20	2.6	19	81	9	57	45	0	1	52	1.12
927260--927322	29	2.2	29	80	5	74	42	1	0	55	1.09
927474--927541	29	2.4	28	85	4	84	52	2	1	42	1.25
927554--927610	9	6.2	9	78	11	62	33	1	0	64	1.04
928645--928704	31	1.9	31	83	6	77	45	0	0	55	0.99
928658--928715	23	2.5	22	80	11	62	41	0	0	58	0.98
929344--929368	4	6.2	4	100	0	50	24	0	0	76	0.80
929760--929802	20	2.2	20	86	0	59	53	13	6	25	1.65
933049--933083	2	17.5	2	100	0	70	51	0	0	48	1.00
933169--933205	12	3.1	12	92	0	56	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
933202--933227	2	13.0	2	100	0	52	50	0	0	50	1.00
934153--934221	17	4.1	18	70	12	65	40	1	1	56	1.17
934172--934224	16	3.2	16	70	15	54	39	1	1	56	1.21
934210--934243	18	1.9	18	88	5	52	47	0	0	52	1.00
934160--934240	33	2.4	33	82	13	103	41	1	1	55	1.15
934497--934541	19	2.4	18	82	13	56	35	2	2	60	1.22
934865--934910	6	7.7	6	86	13	60	52	2	0	45	1.13
934881--934918	12	3.2	12	88	7	51	50	0	2	47	1.15
935550--935583	17	2.1	17	88	5	52	47	0	0	52	1.00
936027--936076	20	2.8	17	75	16	55	44	0	0	56	0.99
936301--936365	23	2.8	24	85	4	105	47	12	3	36	1.57
936360--936405	23	2.0	22	84	12	58	39	2	0	58	1.10
937282--937329	5	9.4	5	80	8	53	39	0	2	58	1.10
937504--937568	7	8.9	7	73	9	58	38	0	0	61	0.96
937493--937571	30	2.6	31	81	15	78	37	0	0	62	0.96
937506--937569	13	4.3	15	70	20	53	35	0	0	64	0.94
940658--940717	15	4.1	15	73	14	54	40	0	3	56	1.16
941360--941386	12	2.2	12	100	0	54	77	0	0	22	0.76
942706--942796	36	2.5	35	80	3	92	23	9	0	67	1.21
942755--942788	14	2.4	14	90	0	50	17	2	0	79	0.86
942763--942788	7	3.7	7	100	0	52	15	0	0	84	0.62
943022--943092	2	35.5	2	100	0	142	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
950195--950276	16	4.9	16	72	20	55	48	0	1	50	1.08
950329--950431	47	2.1	49	84	8	131	54	5	0	39	1.25
950476--950509	15	2.3	15	90	10	52	55	2	0	41	1.15
951224--951268	25	2.0	21	83	16	54	46	0	2	51	1.13
951696--951761	14	4.6	13	72	18	51	33	0	0	66	0.92
951700--951744	17	2.6	17	89	3	72	33	0	0	66	0.92
951722--951764	14	3.1	14	76	10	52	37	0	0	62	0.95
951696--951757	31	2.0	30	87	3	88	32	0	0	67	0.91
951705--951757	17	3.3	16	76	15	56	32	0	0	67	0.91
951753--951862	29	3.9	28	70	10	73	47	0	0	51	1.06
951892--951956	17	3.6	18	82	16	73	53	1	0	44	1.09
951868--951962	16	5.9	16	70	17	54	54	1	0	44	1.07
952299--952334	16	2.2	16	90	9	56	61	0	0	38	0.96
952296--952348	25	2.2	24	83	10	63	62	0	0	37	0.96
952342--952382	13	2.9	14	82	17	57	43	7	0	48	1.30
955593--955645	22	2.4	22	84	6	63	62	0	0	37	0.96
955625--955696	26	2.7	28	79	12	80	56	0	0	43	0.99
955685--955728	16	2.9	16	81	18	58	52	0	0	47	1.00
961278--961315	20	1.9	20	89	10	60	57	0	0	42	0.98
961770--961823	25	2.2	24	83	6	65	50	3	1	44	1.30
964950--964977	2	14.0	2	100	0	56	50	0	0	50	1.00
965618--965661	2	22.0	2	90	0	70	52	2	45	0	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968683--968737	2	27.5	2	100	0	110	49	0	0	50	1.00
969755--969975	34	6.5	33	81	9	257	41	26	7	24	1.81
969757--969975	68	3.2	67	85	3	287	41	26	7	25	1.81
969755--969975	102	2.2	101	88	1	343	41	26	7	24	1.81
974386--974552	68	2.5	68	79	4	185	40	23	7	28	1.82
974385--974558	34	5.1	34	81	3	154	40	23	7	28	1.82
975317--975345	4	7.5	4	92	7	51	0	48	0	51	1.00
976416--976446	2	16.0	2	93	6	55	51	0	0	48	1.00
976835--977070	129	1.8	129	87	1	357	49	7	6	36	1.57
977917--978177	76	3.4	75	78	7	258	49	6	8	35	1.60
979071--979112	21	2.0	21	86	4	59	50	4	2	42	1.36
981350--981391	4	10.2	4	97	2	75	71	2	0	26	0.98
981619--981660	21	1.9	23	85	9	61	54	0	0	45	0.99
981619--981658	18	2.2	20	79	20	52	55	0	0	45	0.99
982114--982165	22	2.2	24	86	10	72	38	0	0	61	0.96
982125--982183	30	1.9	32	89	6	95	37	0	0	62	0.95
982128--982183	22	2.7	20	75	20	60	35	0	0	64	0.94
982175--982215	19	2.2	18	86	4	55	46	0	0	53	1.00
982304--982335	11	2.9	11	95	0	55	62	0	0	37	0.95
982344--982396	19	2.8	20	80	13	58	54	0	1	43	1.11
984534--984585	6	9.5	6	79	12	51	53	0	0	46	1.00
984535--984587	17	3.0	16	76	23	61	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984534--984585	21	2.4	23	84	15	83	53	0	0	46	1.00
984541--984584	11	4.2	11	82	8	56	52	0	0	47	1.00
984541--984581	10	4.0	10	84	6	55	51	0	0	48	1.00
984648--984690	14	3.2	13	80	9	50	51	0	2	46	1.13
984703--984766	22	2.8	21	75	13	56	35	0	1	62	1.05
984712--984768	17	3.5	18	73	20	54	35	0	1	63	1.05
984710--984769	15	3.9	15	75	12	59	36	0	1	61	1.06
985132--985174	22	2.0	22	86	9	61	58	0	0	41	0.98
985493--985534	19	2.2	19	87	8	59	35	11	2	50	1.52
985688--985731	22	1.9	22	81	9	52	59	0	13	27	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21