genome.fa.s13.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold13
Parameters: 2 7 7 80 10 50 1000
Length:  2744999

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   

This is table  2  of  15  ( 1714 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261568--261638	18	3.6	18	69	20	52	9	43	2	43	1.52
263288--265225	476	4.1	474	88	1	2691	35	15	18	30	1.91
270201--270310	42	2.6	42	92	0	184	9	48	2	40	1.49
271928--276545	459	9.8	459	87	3	5815	35	14	18	30	1.91
273989--276545	476	5.4	475	87	2	3515	35	14	18	31	1.91
278171--278246	12	6.9	11	75	15	52	40	2	47	9	1.49
278170--278255	24	3.8	24	72	17	85	43	2	44	10	1.51
278161--278276	42	2.8	42	91	0	178	43	2	44	8	1.48
284458--289652	476	11.0	476	85	3	6689	36	14	18	30	1.91
290512--290550	15	2.6	15	79	0	51	82	2	12	2	0.89
291287--291407	9	13.8	9	71	14	92	42	2	44	9	1.51
291287--291435	42	3.8	42	74	20	160	42	2	45	9	1.50
291287--291390	30	3.4	30	89	6	138	42	2	45	9	1.52
291287--291421	72	1.9	72	90	0	216	42	2	45	9	1.49
291371--291416	12	3.9	12	81	13	51	43	0	43	13	1.43
296234--300017	474	8.0	474	88	1	5363	36	14	18	30	1.91
296234--300022	949	4.0	949	88	2	5641	36	14	18	30	1.91
304129--304247	42	2.8	42	92	0	193	8	46	2	42	1.47
304162--304237	12	6.9	11	75	15	52	9	48	2	39	1.49
304153--304238	24	3.8	24	72	17	85	10	45	2	41	1.51
304144--304214	18	3.6	18	69	20	52	9	43	2	43	1.52
306124--313171	476	14.9	475	88	2	9599	36	14	18	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309874--310994	159	7.1	156	64	15	388	38	14	17	29	1.90
313156--313187	16	2.0	16	100	0	64	25	18	31	25	1.98
313216--322854	476	20.2	477	85	2	11853	31	17	14	36	1.90
318743--319399	159	4.1	159	64	17	346	29	17	16	36	1.92
324493--324564	12	6.5	11	75	22	55	40	0	45	13	1.44
324494--324600	24	5.0	23	67	25	74	42	0	43	14	1.44
324483--324610	42	3.0	42	84	1	166	46	0	42	11	1.40
329568--338030	476	17.8	475	86	2	10507	30	17	14	36	1.91
337771--338294	267	2.0	266	91	1	854	30	17	16	35	1.92
338099--339689	158	10.1	157	64	13	446	29	18	16	35	1.93
338037--343937	476	12.4	477	86	2	7437	29	18	15	35	1.92
343578--344313	404	1.8	407	84	7	1028	30	19	15	33	1.93
343045--344816	879	2.0	882	88	2	2668	29	18	15	35	1.92
343929--350138	476	13.1	476	86	2	7927	29	18	15	36	1.92
343929--350138	951	6.5	949	86	2	8122	29	18	15	36	1.92
347981--349155	158	7.4	157	66	9	467	28	17	17	37	1.92
351769--351887	42	2.8	42	90	0	184	42	2	47	8	1.47
357223--363807	476	13.9	476	86	2	8358	29	18	15	35	1.92
357223--363807	951	6.9	950	85	2	8427	29	18	15	35	1.92
361274--362448	158	7.4	157	66	10	467	28	17	17	36	1.92
362916--364686	879	2.0	881	89	3	2688	30	18	15	35	1.92
365003--366204	159	7.6	160	66	10	408	30	17	15	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363799--367061	476	6.9	476	88	1	4569	29	18	15	36	1.92
367063--385305	476	38.4	476	85	3	22608	29	18	15	35	1.92
378634--378720	43	2.0	43	100	0	174	41	16	11	31	1.83
385304--390585	476	11.1	474	89	2	6823	30	18	14	36	1.91
386513--388593	159	13.1	158	66	13	786	31	18	14	35	1.91
390586--392009	472	3.0	473	87	2	2114	29	17	15	37	1.91
392013--392493	62	7.9	61	79	4	382	25	23	19	32	1.97
392018--392493	123	3.9	123	77	8	438	25	22	19	32	1.97
392022--392507	61	7.9	60	78	5	402	26	22	19	31	1.98
392506--401436	476	18.8	476	85	3	11114	29	18	15	36	1.92
392506--401436	951	9.4	951	85	3	11082	29	18	15	36	1.92
394725--401108	159	40.4	159	64	10	713	29	18	15	36	1.92
402869--403345	62	7.8	60	79	6	406	26	22	18	32	1.97
402869--403281	123	3.4	121	77	8	381	25	23	18	33	1.97
403204--403354	60	2.5	59	79	6	169	27	23	19	29	1.98
403358--421793	476	38.8	476	85	3	22572	30	18	15	36	1.91
406573--413848	159	46.0	158	64	11	941	30	18	15	36	1.91
417950--420072	159	13.4	157	66	10	584	29	17	15	37	1.91
423906--423961	19	2.9	19	89	2	76	35	16	16	32	1.90
423927--423989	32	1.9	33	87	9	94	39	12	17	30	1.87
426448--426485	20	1.9	20	100	0	76	26	15	15	42	1.87
430897--431116	79	2.8	78	82	4	273	32	14	25	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431051--431180	50	2.6	51	87	1	190	30	10	29	30	1.90
431051--431225	51	3.5	51	84	0	208	30	9	28	32	1.89
431107--431250	51	2.8	51	79	2	146	34	9	24	31	1.87
431263--431423	79	2.1	78	84	3	207	33	14	22	28	1.94
433784--433812	13	2.2	13	100	0	58	41	17	13	27	1.87
433796--433851	20	2.8	19	84	12	69	46	17	14	21	1.84
436784--436837	20	2.7	20	77	5	56	37	16	12	33	1.87
439863--440494	312	2.0	310	86	2	883	36	14	16	31	1.90
452251--452309	13	4.8	12	80	14	57	81	8	10	0	0.88
453291--454188	55	16.3	55	90	4	1343	29	30	20	20	1.97
453596--453683	29	3.1	29	61	26	71	26	35	19	19	1.95
453816--453903	29	3.1	29	61	26	71	26	35	19	19	1.95
453969--454116	29	5.3	29	59	18	71	28	31	18	21	1.97
456951--457085	51	2.6	53	79	10	154	32	25	9	32	1.88
457127--457299	52	3.4	51	80	5	204	30	25	12	32	1.92
457279--457360	28	2.9	28	83	7	96	24	32	17	25	1.96
456963--457370	211	1.9	210	86	3	570	29	26	12	30	1.93
460492--460536	24	1.9	23	86	4	63	2	24	2	71	1.09
461189--461754	164	3.4	162	81	6	532	54	8	9	27	1.61
461136--461764	331	1.9	333	80	7	740	54	8	9	27	1.61
467003--467049	21	2.3	21	76	23	55	42	4	19	34	1.70
467170--467208	13	3.0	13	100	0	78	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
467194--467272	20	3.7	20	78	15	77	44	15	15	25	1.85
469287--469317	15	2.1	15	93	0	53	12	22	16	48	1.80
471121--471165	21	2.1	21	84	8	56	22	22	4	51	1.66
473375--473400	13	2.0	13	100	0	52	30	15	15	38	1.88
476624--476678	27	2.0	28	86	10	78	0	16	7	76	1.00
479998--480058	13	5.2	13	75	22	71	36	13	19	31	1.90
479998--480075	33	2.4	33	97	0	147	37	12	19	30	1.89
480011--480075	20	3.6	20	73	26	81	38	12	18	30	1.88
480096--480161	19	3.8	19	73	22	81	34	18	13	33	1.90
480117--480141	13	1.9	13	100	0	50	32	16	16	36	1.90
480098--480160	32	2.0	32	96	0	117	33	19	14	33	1.91
480906--481342	42	10.4	42	72	8	187	42	16	24	17	1.88
480946--481318	84	4.5	83	78	4	288	42	16	24	16	1.88
481325--481986	317	2.1	318	95	0	1173	44	14	19	21	1.86
481994--482522	42	12.6	42	73	7	245	41	14	25	18	1.89
481998--482391	126	3.1	125	77	3	301	42	14	25	18	1.88
482082--482392	125	2.5	126	77	3	304	43	14	24	18	1.87
482841--483072	30	7.7	30	67	9	112	40	13	22	22	1.89
482843--483575	60	12.3	60	75	6	506	42	11	22	23	1.86
482843--483278	121	3.6	121	81	3	441	41	12	22	23	1.88
482841--483118	30	9.2	30	65	17	103	41	12	23	23	1.88
482828--483360	181	2.9	181	81	2	552	42	11	22	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483051--483276	30	7.5	30	70	10	131	42	10	21	25	1.84
483139--483559	115	3.6	115	75	6	308	43	10	22	23	1.84
483403--483591	30	6.4	30	67	12	95	43	10	24	21	1.84
483483--483604	30	4.0	30	75	8	113	45	11	21	21	1.82
483558--483726	61	2.8	61	76	6	157	41	14	21	22	1.89
484521--484558	9	4.0	9	87	12	58	86	0	13	0	0.56
484521--484561	11	3.9	11	84	6	50	85	0	14	0	0.60
484521--484554	17	1.9	18	94	5	61	88	0	11	0	0.52
484521--484558	20	1.9	19	94	5	67	86	0	13	0	0.56
485125--485396	42	6.4	43	77	7	245	18	25	16	38	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15