genome.fa.s187.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold187
Parameters: 2 7 7 80 10 50 1000
Length:  2169796

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  3  of  13  ( 1529 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
315699--316444	156	4.8	155	77	6	618	27	17	17	38	1.92
315714--316444	313	2.3	309	82	6	814	26	17	17	38	1.92
315689--316444	157	4.8	154	77	7	550	27	17	17	37	1.92
318043--318068	13	2.0	13	100	0	52	38	15	15	30	1.88
318022--318086	33	2.0	32	90	3	103	36	16	13	32	1.89
318056--318106	19	2.6	20	90	3	77	37	19	11	31	1.88
318152--318182	13	2.4	13	94	0	53	32	19	12	35	1.90
319725--319772	9	5.3	9	87	0	51	47	0	29	22	1.51
319740--319770	3	10.3	3	92	0	53	38	0	32	29	1.57
326166--326231	34	1.9	34	93	0	114	45	6	31	16	1.72
326903--326956	19	2.8	19	85	2	63	31	18	14	35	1.91
327003--327046	13	3.4	13	96	0	79	31	11	13	43	1.80
332669--332701	17	1.9	17	93	0	57	0	24	0	75	0.80
334107--334312	68	3.0	68	78	3	200	19	15	32	32	1.93
335447--335499	20	2.7	20	100	0	106	26	9	15	49	1.74
335560--335645	20	4.7	20	67	21	71	31	16	16	36	1.91
335539--335643	52	2.0	52	94	0	183	31	19	12	37	1.88
336080--336172	36	2.8	33	79	12	109	31	11	26	30	1.92
336463--336529	29	2.2	29	84	5	89	52	16	8	22	1.71
336728--336760	17	1.9	17	88	11	50	78	0	0	21	0.75
337201--337318	52	2.3	52	92	0	200	26	15	12	45	1.81
340235--340307	20	3.7	19	87	7	85	38	16	16	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342701--342725	13	1.9	13	100	0	50	32	16	16	36	1.90
346861--346900	18	2.2	18	100	0	80	17	15	0	67	1.23
347304--347338	15	2.3	15	95	0	61	28	28	0	42	1.56
348942--348966	13	1.9	13	100	0	50	32	16	16	36	1.90
348922--348986	33	2.0	33	85	11	89	30	20	15	33	1.93
349014--349069	19	2.9	19	89	2	76	35	14	14	35	1.86
350458--351028	57	9.9	57	73	13	370	46	12	11	28	1.77
350458--351028	115	5.0	114	74	13	374	46	12	11	28	1.77
352998--353046	22	2.3	21	89	10	73	46	6	10	36	1.63
353115--353153	20	1.9	21	84	5	53	33	25	12	28	1.93
353143--353192	20	2.5	20	90	3	75	28	16	20	36	1.93
355313--355353	21	2.0	21	85	0	55	56	0	21	21	1.43
359888--359994	51	2.1	52	87	1	153	28	14	14	42	1.85
360456--360560	53	2.0	52	92	1	174	39	33	4	22	1.75
368364--368417	21	2.7	20	83	8	74	37	11	16	35	1.84
382379--382510	14	9.9	13	70	12	90	81	11	4	2	0.92
382378--382498	21	6.0	20	72	7	102	81	11	4	1	0.91
382393--382504	25	4.3	26	78	15	99	80	12	5	1	0.96
382378--382510	11	12.6	10	74	17	85	81	12	4	2	0.94
382379--382510	49	2.7	47	81	14	142	81	11	4	2	0.92
382379--382498	1	120.0	1	64	0	51	82	10	5	1	0.89
382423--382510	32	3.0	28	80	13	97	81	13	3	1	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387850--387880	15	2.1	15	93	0	53	48	16	22	12	1.80
390076--390118	20	2.2	19	84	16	52	30	20	4	44	1.72
394571--394629	21	2.8	21	76	19	59	38	5	11	44	1.63
394830--394855	13	2.0	13	100	0	52	38	15	15	30	1.88
394812--394875	32	2.0	33	87	3	94	40	17	14	28	1.88
395790--395874	37	2.3	37	95	0	161	27	15	14	43	1.85
396239--396625	28	13.7	28	84	6	412	30	28	18	21	1.97
396233--396673	84	5.2	84	80	6	444	31	29	18	21	1.97
396695--396917	43	4.9	45	81	9	256	26	24	17	32	1.97
396690--396917	92	2.5	92	94	0	384	25	25	16	32	1.96
396827--397077	104	2.5	102	75	8	231	25	26	15	32	1.95
404252--404318	19	3.8	19	72	22	74	34	11	17	35	1.87
404253--404315	32	2.0	32	93	0	108	33	12	19	34	1.89
404359--404383	13	1.9	13	100	0	50	32	16	16	36	1.90
404400--404517	52	2.3	52	96	0	218	36	20	18	24	1.95
414849--414883	15	2.3	15	90	0	52	17	28	5	48	1.69
416252--416406	51	3.0	52	83	2	195	30	24	9	36	1.86
416337--416511	80	2.2	81	81	1	199	28	22	12	36	1.91
416471--416568	28	3.5	28	95	0	178	24	25	18	31	1.97
416525--417124	79	7.6	78	81	5	594	27	23	14	35	1.93
416526--417131	240	2.5	237	82	5	713	27	23	13	35	1.93
416525--417124	319	1.9	317	84	3	812	27	23	14	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417726--417751	13	2.0	13	100	0	52	38	15	15	30	1.88
422642--422691	20	2.5	20	96	0	91	36	18	10	36	1.84
427564--427628	27	2.4	27	94	0	112	38	18	20	23	1.93
427596--427797	55	3.7	55	77	1	154	37	20	17	24	1.94
427882--428072	54	3.5	54	86	0	247	27	21	23	27	1.99
428509--428549	21	2.0	21	85	9	57	39	12	9	39	1.76
428589--428659	20	3.6	19	77	7	70	40	16	12	29	1.86
428629--428807	53	3.5	53	91	4	287	37	17	17	27	1.92
428828--428855	9	3.1	9	100	0	56	21	35	10	32	1.88
428922--428947	13	2.0	13	100	0	52	30	15	23	30	1.95
429418--429484	37	1.9	35	88	11	102	32	11	25	29	1.92
432343--432410	35	2.0	35	91	2	111	29	25	13	32	1.93
433222--433246	13	1.9	13	100	0	50	36	16	16	32	1.90
435470--435514	21	2.1	21	84	8	56	53	4	20	22	1.63
437318--437348	15	2.1	15	93	0	53	48	16	22	12	1.80
439418--439456	13	3.0	13	96	0	69	30	17	15	35	1.91
439579--439621	20	2.2	19	84	16	52	30	20	4	44	1.72
439891--439931	20	2.0	20	90	0	64	19	41	29	9	1.83
442002--442027	13	2.0	13	100	0	52	38	15	15	30	1.88
443825--443870	21	2.0	24	88	12	71	60	4	13	21	1.49
451120--451172	19	2.7	20	82	8	63	32	15	15	37	1.88
460643--460710	35	2.0	35	91	2	111	30	26	11	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461142--461188	20	2.3	20	85	3	58	38	12	12	36	1.82
462698--462722	13	1.9	13	100	0	50	80	0	0	20	0.72
464852--465296	66	6.8	65	73	10	298	42	16	22	18	1.89
465138--465238	34	3.0	34	69	21	95	43	18	22	14	1.87
465481--465535	19	3.1	19	65	20	55	29	12	7	50	1.67
466628--466652	13	1.9	13	100	0	50	32	16	16	36	1.90
466638--466689	17	2.9	17	83	11	61	32	9	17	40	1.82
466720--466773	22	2.5	22	90	0	81	31	18	11	38	1.86
468619--468677	21	2.8	21	86	0	73	61	0	22	16	1.35
471962--471987	13	2.0	13	100	0	52	38	15	15	30	1.88
471940--472007	33	2.1	32	91	2	109	32	13	19	35	1.90
472045--472100	21	2.7	21	83	8	71	32	17	14	35	1.90
472088--472112	13	1.9	13	100	0	50	36	16	16	32	1.90
474578--474615	13	2.9	13	96	0	67	34	18	15	31	1.92
474818--474843	8	3.2	8	100	0	52	61	23	0	15	1.33
480713--480738	13	2.0	13	100	0	52	38	15	15	30	1.88
480691--480758	33	2.1	32	88	2	100	32	13	17	36	1.89
481357--481408	19	2.7	19	84	3	59	28	13	15	42	1.85
481445--481492	22	2.2	22	92	0	78	29	16	14	39	1.88
486120--486168	16	3.1	16	84	0	71	40	32	20	6	1.77
486630--486659	16	1.9	15	93	6	51	53	3	16	26	1.59
487564--487655	32	2.9	31	72	6	85	42	29	15	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487564--487603	16	2.5	16	83	0	53	40	35	12	12	1.81
490740--490887	70	2.1	70	89	0	224	32	20	13	33	1.91
496078--496115	19	2.0	19	94	0	67	55	0	7	36	1.29
497872--497915	19	2.3	19	84	4	52	38	13	15	31	1.87
509512--509602	23	4.1	23	79	9	100	3	17	12	67	1.36
509513--509610	45	2.2	43	82	12	119	5	17	11	66	1.40
510460--510503	23	1.9	23	86	9	63	47	4	9	38	1.56
516328--516373	20	2.3	20	84	0	56	36	15	15	32	1.88
516359--516387	13	2.2	13	100	0	58	31	17	13	37	1.89
516375--516427	20	2.6	20	81	3	61	37	16	15	30	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13