genome.fa.s187.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold187
Parameters: 2 7 7 80 10 50 1000
Length:  2169796

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  7  of  13  ( 1529 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
881245--881323	16	5.2	16	66	17	53	41	0	0	58	0.98
884297--884334	18	2.0	20	90	10	62	34	0	0	65	0.93
885415--885446	2	16.0	2	100	0	64	50	0	0	50	1.00
886102--886132	14	2.2	14	94	0	53	58	0	0	41	0.98
889136--889179	3	14.7	3	95	0	79	34	2	0	63	1.07
889959--890012	23	2.3	24	87	12	85	57	0	1	40	1.09
889959--890029	12	6.3	12	71	18	55	61	0	1	36	1.05
889990--890029	17	2.5	15	84	11	53	67	0	0	32	0.91
890066--890118	27	2.0	26	85	10	72	56	0	0	43	0.99
890135--890169	16	2.2	16	89	0	52	60	8	0	31	1.27
893334--893461	51	2.5	52	88	1	195	29	17	17	35	1.92
893470--893528	13	4.9	13	73	26	67	35	13	16	33	1.88
893470--893549	34	2.4	34	100	0	160	35	12	17	35	1.88
893573--893803	32	7.2	32	98	0	435	32	18	14	33	1.91
894640--894716	39	2.0	39	84	5	102	24	23	24	27	2.00
894787--894904	27	4.2	29	80	12	104	17	16	35	30	1.92
894828--894914	27	3.1	27	86	3	93	22	16	35	25	1.94
894882--895387	34	14.8	34	88	3	739	36	12	32	18	1.88
894882--895387	69	7.4	69	88	3	745	36	12	32	18	1.88
896827--896918	10	9.1	10	79	13	82	1	4	9	84	0.80
896828--896917	15	5.9	15	79	16	87	1	4	10	84	0.81
896870--896916	5	9.8	5	90	6	71	0	2	14	82	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
896836--896918	1	83.0	1	70	0	58	0	4	9	85	0.73
906179--906220	21	2.0	21	100	0	84	28	4	23	42	1.74
910788--910916	52	2.5	52	90	0	222	28	19	18	33	1.96
910788--910936	52	2.9	52	87	2	219	30	18	18	32	1.95
910925--910949	13	1.9	13	100	0	50	36	16	16	32	1.90
911004--911065	18	3.7	18	77	22	71	40	16	12	30	1.86
910994--911063	32	2.2	32	92	2	115	38	17	12	31	1.87
912125--912170	24	2.0	23	91	4	74	32	4	4	58	1.37
912390--912504	35	3.1	35	69	19	108	20	2	14	62	1.43
912366--912487	40	3.2	40	70	18	123	20	1	15	62	1.41
912366--912518	76	2.0	76	98	1	299	20	2	15	60	1.47
913296--913331	13	2.8	13	91	0	54	38	16	13	30	1.88
916123--916692	166	3.5	165	79	11	645	27	11	8	52	1.65
916123--916859	166	4.5	162	78	11	623	27	11	8	52	1.67
917255--917300	19	2.4	19	82	13	58	76	0	19	4	0.96
917269--917303	18	1.9	18	88	0	52	77	0	14	8	0.99
919872--919902	10	3.0	10	95	4	53	38	38	0	22	1.54
927797--928183	27	14.3	27	87	1	461	26	29	12	31	1.93
927824--928299	81	5.8	80	83	4	289	27	28	13	30	1.94
928186--929454	28	45.1	28	82	4	1345	30	27	16	25	1.97
930409--930483	20	3.8	20	83	0	105	32	13	13	41	1.83
935241--935280	20	2.1	19	86	13	55	65	25	0	10	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
936173--936197	13	1.9	13	100	0	50	36	16	16	32	1.90
938565--938690	51	2.5	51	82	7	132	32	17	4	45	1.69
944733--944799	30	2.2	30	78	7	73	20	32	13	32	1.92
944802--944949	60	2.4	60	80	3	170	27	23	18	31	1.97
944936--945047	39	2.8	39	76	10	118	25	18	12	43	1.85
944936--945115	44	4.3	43	71	12	124	25	20	12	42	1.87
945155--945246	42	2.2	43	82	7	109	18	20	11	48	1.79
946009--946063	20	2.7	20	88	2	74	27	12	10	49	1.74
948505--948876	157	2.4	158	83	1	442	28	23	11	36	1.89
948442--948882	79	5.6	79	78	4	379	28	22	11	37	1.89
950217--950253	19	1.9	19	94	0	65	48	0	0	51	1.00
951340--951401	33	1.9	32	87	9	90	33	9	20	35	1.86
951712--951752	20	2.0	21	85	4	57	39	2	0	58	1.11
951946--951985	21	1.9	21	89	0	62	40	0	0	60	0.97
952222--952427	94	2.2	94	85	1	270	30	15	13	41	1.85
952726--952905	16	11.8	16	65	26	65	40	1	0	58	1.05
952729--952943	11	18.2	12	63	24	50	38	0	0	59	1.10
952786--952867	26	3.1	26	72	15	69	43	2	0	53	1.13
952763--952853	32	2.8	33	80	8	82	42	2	0	54	1.12
952835--952906	20	3.5	20	75	14	58	36	0	0	63	0.94
952726--952927	15	13.1	16	69	20	76	38	0	0	59	1.08
952844--952927	16	5.6	16	73	17	56	33	0	1	65	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
952839--952942	28	3.7	28	74	15	74	33	0	1	64	1.05
954277--954315	2	19.5	2	100	0	78	51	0	0	48	1.00
954980--955043	32	2.0	32	100	0	128	21	12	28	37	1.90
956688--956719	2	16.0	2	100	0	64	50	0	0	50	1.00
964454--964489	18	2.0	18	100	0	72	0	38	11	50	1.38
965720--965749	11	2.9	10	90	9	51	23	6	0	70	1.11
968037--968107	37	2.0	36	83	10	92	29	23	8	38	1.85
968529--968626	52	1.9	49	87	6	142	32	16	18	32	1.93
968676--968726	20	2.6	20	81	3	68	37	17	19	25	1.94
972484--972524	21	2.0	21	90	0	64	19	21	2	56	1.54
972715--972749	3	11.7	3	100	0	70	31	34	0	34	1.58
974138--974170	16	2.1	16	100	0	66	33	24	6	36	1.80
982845--983049	111	1.9	106	84	7	268	41	12	6	40	1.68
983177--983231	27	2.0	27	96	0	101	54	10	10	23	1.67
987942--988025	16	5.3	15	84	7	96	45	1	1	52	1.16
987953--988027	32	2.4	31	90	2	114	44	1	1	53	1.17
988082--988134	22	2.4	23	87	9	83	35	5	0	58	1.22
988416--988483	32	2.1	33	83	5	86	35	2	8	52	1.47
989527--989572	16	2.7	18	77	19	53	30	0	0	69	0.89
991847--991872	13	2.0	13	100	0	52	30	15	15	38	1.88
991827--991890	33	2.0	32	87	9	94	28	14	20	37	1.91
991961--991985	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991995--992033	20	2.0	19	95	5	69	30	10	23	35	1.88
992579--992610	16	2.0	16	100	0	64	37	18	6	37	1.76
993981--994025	20	2.1	22	88	8	67	4	28	48	17	1.66
994467--994504	13	2.9	13	92	0	58	36	18	13	31	1.89
994702--994732	8	3.8	8	95	4	53	61	25	0	12	1.32
1000640--1000692	20	2.7	21	85	11	76	30	13	20	35	1.91
1000733--1000808	20	3.8	19	81	11	73	27	13	18	40	1.88
1004522--1004782	134	1.9	134	99	0	513	41	15	16	26	1.88
1007079--1007103	6	4.2	6	100	0	50	48	0	36	16	1.46
1012714--1012770	30	1.9	30	89	7	89	33	21	19	26	1.97
1014813--1014876	31	2.1	31	87	0	92	46	9	21	21	1.79
1019275--1019322	16	3.1	16	81	3	53	50	0	2	47	1.12
1021143--1021181	19	2.1	18	85	4	51	20	2	7	69	1.26
1026141--1026185	23	1.9	24	86	13	67	46	0	0	53	1.00
1026865--1026900	15	2.4	15	90	0	54	44	5	5	44	1.50
1031555--1031626	27	2.6	29	85	12	89	66	2	1	29	1.14
1031585--1031635	9	5.7	9	75	9	50	64	3	0	31	1.11
1032058--1032094	18	2.1	17	95	5	65	35	10	27	27	1.90
1032644--1032745	29	3.5	29	90	2	152	72	0	4	22	1.03
1034369--1034417	24	2.0	25	84	4	64	69	0	0	30	0.89
1034963--1034999	15	2.4	16	90	4	58	54	2	0	43	1.14
1038498--1038539	22	1.9	22	90	0	66	33	0	2	64	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039117--1039151	3	11.7	3	100	0	70	65	0	0	34	0.93
1039304--1039337	16	2.0	18	88	11	54	52	0	0	47	1.00
1040457--1040501	20	2.2	20	88	0	63	42	0	0	57	0.98
1040454--1040547	12	7.2	13	71	12	61	48	0	0	51	1.00
1041109--1041196	44	1.9	45	81	6	106	56	0	1	42	1.06
1041426--1041519	46	2.1	45	85	2	125	44	6	14	34	1.71
1043106--1043135	2	15.0	2	100	0	60	50	0	0	50	1.00
1044205--1044238	17	2.0	17	88	0	50	32	2	0	64	1.08
1044479--1044513	18	1.9	18	88	0	52	22	0	20	57	1.41
1044503--1044531	2	14.5	2	100	0	58	48	0	0	51	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13