genome.fa.s187.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold187
Parameters: 2 7 7 80 10 50 1000
Length:  2169796

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  8  of  13  ( 1529 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044839--1044871	17	1.9	17	88	11	50	30	0	15	54	1.41
1045103--1045143	2	22.0	2	85	14	61	48	0	0	51	1.00
1045462--1045489	3	9.3	3	100	0	56	67	0	0	32	0.91
1047475--1047505	2	15.5	2	93	0	53	48	0	0	51	1.00
1049745--1049811	15	4.6	14	71	14	55	32	13	17	35	1.89
1049771--1049985	14	14.9	14	70	13	114	31	18	20	29	1.97
1049745--1049911	29	5.8	28	79	8	140	31	17	19	30	1.96
1049771--1049945	72	2.4	72	79	4	167	33	19	19	28	1.96
1049786--1050003	29	7.5	29	74	10	115	29	20	21	28	1.98
1050270--1050318	3	16.0	3	95	4	89	65	0	2	32	1.04
1051167--1051213	18	2.5	19	86	6	69	34	4	8	53	1.51
1054001--1054114	24	4.8	24	70	9	72	28	24	16	30	1.97
1055563--1055644	28	2.9	28	80	7	96	26	17	31	24	1.97
1055627--1055797	51	3.3	51	78	4	189	33	11	25	29	1.91
1055780--1055855	27	2.8	28	88	6	102	21	21	34	23	1.97
1058319--1058344	13	2.0	13	100	0	52	38	15	15	30	1.88
1058298--1058364	33	2.0	33	88	0	98	43	16	14	25	1.86
1058384--1058451	19	3.9	18	76	23	83	38	14	11	35	1.83
1058406--1058430	13	1.9	13	100	0	50	32	16	16	36	1.90
1058387--1058449	32	2.0	32	96	0	117	36	15	12	34	1.86
1058507--1058563	21	2.7	21	100	0	114	36	21	10	31	1.87
1060969--1061009	21	1.9	22	90	5	66	68	4	24	2	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1064336--1064365	3	9.7	3	92	7	51	33	0	0	66	0.92
1065796--1065832	2	18.5	2	100	0	74	51	0	0	48	1.00
1068630--1068675	21	2.2	21	84	7	58	58	13	0	28	1.35
1070189--1070387	99	2.0	99	87	0	281	29	19	14	37	1.90
1071566--1071597	2	16.0	2	100	0	64	50	0	0	50	1.00
1073100--1073124	13	1.9	13	100	0	50	36	16	16	32	1.90
1073077--1073144	33	2.1	33	91	2	111	33	14	16	35	1.89
1073198--1073247	20	2.5	20	86	0	64	38	16	16	30	1.90
1075124--1075174	21	2.4	21	90	0	75	21	13	33	31	1.92
1075882--1075918	8	4.9	8	83	12	51	62	24	0	13	1.31
1075891--1075918	14	2.0	14	100	0	56	64	21	0	14	1.29
1081868--1081892	13	1.9	13	100	0	50	36	16	16	32	1.90
1081845--1081912	33	2.1	33	91	2	111	33	14	16	35	1.89
1081966--1082015	20	2.5	20	86	0	64	38	16	16	30	1.90
1082657--1082706	21	2.4	20	77	9	55	48	8	20	24	1.76
1082783--1082826	21	2.1	21	91	0	70	36	27	13	22	1.92
1084117--1084163	24	2.0	24	95	0	85	44	12	19	23	1.85
1088107--1088146	21	1.9	21	94	0	71	30	25	17	27	1.97
1089723--1089755	2	17.0	2	93	6	59	48	0	0	51	1.00
1091244--1091308	31	2.1	31	85	5	87	33	15	15	35	1.89
1091362--1091410	20	2.5	20	86	0	62	38	14	16	30	1.88
1093291--1093338	22	2.2	22	85	7	62	22	12	29	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1099995--1100063	34	2.1	34	84	10	90	33	15	14	36	1.89
1100114--1100163	20	2.5	20	86	0	64	38	16	16	30	1.90
1100939--1100978	20	2.0	20	90	0	62	35	30	12	22	1.91
1102251--1102297	24	1.9	25	91	4	78	44	10	19	25	1.82
1106482--1106680	99	2.0	99	86	1	274	29	19	14	37	1.90
1107849--1107880	2	16.0	2	100	0	64	50	0	0	50	1.00
1109388--1109412	13	1.9	13	100	0	50	36	16	16	32	1.90
1109364--1109432	32	2.1	34	89	5	106	33	15	15	34	1.90
1111403--1111453	21	2.4	21	90	0	75	21	13	33	31	1.92
1112163--1112199	8	4.9	8	83	12	51	62	24	0	13	1.31
1112172--1112199	14	2.0	14	100	0	56	64	21	0	14	1.29
1118148--1118172	13	1.9	13	100	0	50	36	16	16	32	1.90
1118125--1118192	33	2.1	33	91	2	111	33	14	16	35	1.89
1118246--1118295	20	2.5	20	86	0	64	38	16	16	30	1.90
1118937--1118986	21	2.4	20	77	9	55	48	8	20	24	1.76
1119063--1119106	21	2.1	21	91	0	70	36	27	13	22	1.92
1120397--1120443	24	2.0	24	95	0	85	44	12	19	23	1.85
1126942--1127404	79	5.9	76	80	10	409	28	24	12	34	1.92
1126930--1127404	158	3.0	158	81	5	507	28	24	12	34	1.92
1126914--1127404	237	2.1	237	82	4	589	27	24	13	34	1.93
1127259--1127532	130	2.1	130	86	2	381	27	24	13	34	1.93
1127336--1127448	51	2.2	51	87	3	156	29	23	13	33	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1127387--1127577	79	2.4	79	80	5	199	25	25	15	33	1.95
1127178--1127592	209	2.0	210	84	5	545	26	24	13	34	1.93
1128877--1128921	22	2.1	21	87	4	63	35	24	13	26	1.92
1130798--1130881	43	2.0	43	100	0	168	26	14	26	33	1.94
1136931--1136987	24	2.3	24	79	8	62	33	8	17	40	1.81
1138976--1139030	20	2.8	20	100	0	110	32	18	10	38	1.85
1141424--1141453	16	1.9	16	93	6	53	50	6	6	36	1.55
1143618--1143666	22	2.3	21	83	10	64	34	24	2	38	1.67
1144476--1144518	20	2.0	21	86	8	61	13	30	39	16	1.87
1144791--1144830	22	1.9	22	90	10	66	52	0	15	32	1.43
1144791--1144836	22	2.2	20	84	7	56	52	0	13	34	1.40
1151137--1151199	33	1.9	33	87	6	92	34	15	12	36	1.86
1151231--1151303	20	3.7	19	87	7	85	38	17	15	28	1.90
1151870--1151920	19	2.6	19	87	9	68	45	13	13	27	1.82
1157963--1157996	15	2.2	16	89	5	52	32	14	2	50	1.58
1160116--1160192	20	3.9	20	82	3	102	35	16	11	36	1.86
1160118--1160193	39	1.9	39	94	0	134	35	17	13	34	1.88
1161972--1162002	16	1.9	16	93	0	53	35	6	9	48	1.62
1162861--1162890	5	6.0	5	92	0	51	63	0	0	36	0.95
1177295--1177323	14	2.1	14	100	0	58	34	20	0	44	1.52
1178811--1178860	24	2.1	24	81	7	57	26	6	10	58	1.54
1181534--1181585	20	2.7	19	81	3	59	46	5	0	48	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183448--1183487	20	2.0	21	90	5	64	7	12	0	80	0.91
1183443--1183494	20	2.8	17	76	18	50	9	11	0	78	0.95
1186224--1186303	33	2.4	33	81	12	92	55	0	0	45	0.99
1186227--1186310	32	2.9	27	74	20	80	53	0	0	46	1.00
1186494--1186554	16	3.7	17	76	12	56	45	1	0	52	1.10
1186566--1186618	27	1.9	28	84	3	72	39	1	0	58	1.09
1187351--1187392	15	2.9	15	82	3	50	50	0	2	47	1.14
1188459--1188490	6	5.2	6	96	3	55	53	0	0	46	1.00
1191914--1192223	154	2.0	154	94	0	548	35	14	7	43	1.73
1198205--1198257	20	2.6	21	82	8	65	37	15	16	30	1.90
1198299--1198364	20	3.7	20	73	26	83	36	18	15	30	1.91
1198319--1198344	13	2.0	13	100	0	52	30	15	15	38	1.88
1198298--1198366	33	2.1	33	100	0	138	34	17	15	31	1.92
1202994--1203068	19	3.8	19	89	3	105	38	17	14	29	1.89
1205534--1205562	13	2.2	13	100	0	58	41	17	13	27	1.87
1207276--1207747	234	2.0	234	97	0	892	27	21	11	39	1.88
1212018--1212091	19	3.7	19	87	5	85	36	18	17	27	1.94
1214526--1214563	13	2.9	13	92	0	58	28	15	21	34	1.94
1218037--1218081	21	2.1	21	84	8	56	53	4	20	22	1.63
1219884--1219914	15	2.1	15	93	0	53	48	16	22	12	1.80
1221992--1222030	13	3.0	13	100	0	78	30	15	15	38	1.88
1223838--1223876	20	2.0	20	89	0	60	35	5	30	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1224596--1224621	13	2.0	13	100	0	52	38	15	15	30	1.88
1226995--1227047	20	2.6	21	82	8	65	37	16	16	28	1.91
1227108--1227133	13	2.0	13	100	0	52	30	15	15	38	1.88
1227088--1227155	33	2.1	32	91	8	111	35	16	16	32	1.91
1229110--1229175	34	1.9	34	82	11	82	57	10	15	16	1.65
1229517--1229566	19	2.6	19	83	3	64	36	14	14	36	1.86
1230304--1230351	17	2.9	17	90	3	71	50	16	0	33	1.46
1230476--1230510	17	2.1	17	94	0	61	34	8	11	45	1.71
1232226--1232291	33	2.0	33	81	0	78	45	16	12	25	1.82
1234605--1234812	80	2.6	79	82	2	229	29	16	29	24	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13