genome.fa.s187.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold187
Parameters: 2 7 7 80 10 50 1000
Length:  2169796

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  5  of  13  ( 1529 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641271--641440	52	3.3	50	79	11	182	32	12	24	29	1.93
641414--641495	27	3.0	28	82	10	98	26	21	29	21	1.99
643916--643941	13	2.0	13	100	0	52	38	15	15	30	1.88
643895--643961	33	2.0	33	88	0	98	43	16	14	25	1.86
643981--644048	19	3.9	18	76	23	83	38	14	11	35	1.83
644003--644027	13	1.9	13	100	0	50	32	16	16	36	1.90
643984--644046	32	2.0	32	96	0	117	36	15	12	34	1.86
644104--644160	21	2.7	21	97	0	105	36	19	10	33	1.86
644159--644197	9	4.3	9	86	0	60	15	0	0	84	0.62
644796--645583	55	14.3	55	91	4	1170	20	20	29	28	1.98
645092--645180	29	3.2	29	67	20	89	19	19	33	28	1.96
645447--645538	26	3.4	25	68	15	76	20	20	31	27	1.98
646566--646603	13	2.9	13	92	7	60	0	2	10	86	0.66
659082--659135	28	1.9	28	88	7	83	31	16	27	24	1.96
659169--659240	28	2.6	28	86	0	90	23	20	33	22	1.97
659229--659398	52	3.3	50	79	11	173	32	12	24	30	1.93
659372--659453	27	3.0	28	82	10	98	26	21	29	21	1.99
661873--661898	13	2.0	13	100	0	52	38	15	15	30	1.88
661852--661918	33	2.0	33	88	0	98	43	16	14	25	1.86
661938--662005	19	3.9	18	76	23	83	38	14	11	35	1.83
661960--661984	13	1.9	13	100	0	50	32	16	16	36	1.90
661941--662003	32	2.0	32	96	0	117	36	15	12	34	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662064--662115	21	2.5	21	93	3	88	36	21	9	32	1.86
662118--662152	9	4.0	9	85	7	54	17	0	0	82	0.66
665278--665359	9	9.6	8	73	20	60	80	10	6	2	0.98
665291--665360	9	7.8	9	72	4	61	80	12	4	2	0.98
665314--665373	26	2.4	26	82	15	74	78	16	5	0	0.92
665291--665374	27	3.2	26	78	9	82	78	14	4	2	1.01
666794--666873	29	2.8	27	76	10	79	32	28	15	23	1.95
666875--667175	34	9.2	32	79	11	256	18	31	13	35	1.90
666858--667046	95	2.0	94	85	3	254	21	29	12	36	1.91
667154--667261	29	3.7	30	80	10	107	31	30	20	17	1.96
667265--667707	52	8.8	51	80	6	388	24	25	17	32	1.97
667257--667707	100	4.5	101	79	4	443	23	25	17	32	1.97
668432--668458	13	2.1	13	100	0	54	29	14	14	40	1.86
673760--673821	32	1.9	32	83	6	81	35	19	9	35	1.85
673851--673899	20	2.5	20	90	3	73	34	16	18	30	1.93
675343--675388	2	23.0	2	100	0	92	50	0	0	50	1.00
675436--675463	2	14.0	2	100	0	56	50	0	0	50	1.00
676243--676288	23	2.0	24	86	4	67	34	2	0	63	1.07
676243--676310	13	5.6	12	81	8	75	30	1	0	67	0.99
676273--676334	13	4.4	14	78	11	56	35	0	0	64	0.94
680047--680098	26	2.0	26	100	0	104	26	19	11	42	1.85
682985--683032	16	3.1	16	72	3	53	64	0	4	31	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686056--686168	51	2.2	51	84	4	149	31	12	26	29	1.93
686148--686265	57	2.1	57	87	3	166	36	15	22	25	1.93
686211--686759	79	7.0	79	80	5	538	36	12	23	28	1.90
686212--686759	158	3.5	156	82	4	629	36	12	22	28	1.90
686212--686759	237	2.3	236	83	3	708	36	12	22	28	1.90
688292--688316	8	3.1	8	100	0	50	36	12	28	24	1.91
689167--689223	20	2.7	21	83	8	80	43	10	14	31	1.79
689682--689854	78	2.2	76	74	12	163	42	13	13	30	1.83
691148--691226	42	1.9	41	97	2	149	43	7	21	27	1.80
691147--691237	42	2.2	42	90	2	148	43	8	21	25	1.81
696219--696339	51	2.3	52	80	4	138	36	14	22	26	1.93
696271--696500	78	2.9	79	92	1	372	33	15	23	27	1.95
696428--696553	53	2.4	51	80	13	141	30	13	26	29	1.94
697788--697906	62	1.9	61	93	1	202	16	30	6	46	1.73
697788--698046	27	9.1	27	80	14	274	16	30	6	46	1.73
697788--698020	88	2.6	88	95	1	423	17	30	6	46	1.73
697902--697967	35	1.9	35	93	3	116	18	31	6	43	1.74
697948--698052	26	4.0	27	90	4	110	17	31	5	45	1.71
697860--698051	26	7.0	26	72	19	106	17	29	6	46	1.72
697848--698046	53	3.6	52	82	15	231	17	29	6	46	1.73
698056--698392	173	2.0	171	92	3	561	35	18	12	33	1.89
698858--698990	42	3.2	41	78	12	130	39	12	27	20	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
699028--699983	60	16.4	59	80	11	1003	24	19	28	27	1.99
698974--699946	114	8.4	112	87	6	1270	24	19	28	27	1.99
699899--700082	99	1.9	99	94	4	327	25	17	29	26	1.98
699987--700143	61	2.6	59	86	6	199	28	17	28	26	1.98
699838--700303	160	2.9	159	91	2	763	26	18	29	26	1.98
700147--700542	61	6.5	61	90	4	572	26	19	28	25	1.98
700147--700542	121	3.3	121	89	7	574	26	19	28	25	1.98
706692--706921	78	2.9	78	92	1	370	33	15	23	26	1.95
706849--706974	53	2.4	51	81	13	150	30	14	26	28	1.95
708122--708178	27	2.1	27	93	3	98	15	33	7	43	1.74
712372--712399	13	2.2	13	100	0	56	39	17	14	28	1.89
712354--712419	33	2.0	33	88	5	98	39	13	16	30	1.87
713485--713526	21	2.0	21	90	0	66	26	7	11	54	1.62
714923--714986	25	2.6	25	90	2	85	25	37	4	32	1.77
714931--714986	25	2.2	25	96	0	103	23	41	3	32	1.71
715250--715279	8	3.6	8	91	8	51	13	23	40	23	1.90
715965--716195	9	25.8	9	62	28	50	64	4	3	28	1.29
715963--716114	35	4.3	34	72	14	130	63	4	3	28	1.30
716139--716241	18	5.5	17	70	23	57	69	4	0	25	1.07
716125--716194	8	8.5	8	70	17	54	67	4	0	28	1.10
716139--716243	17	5.6	18	70	26	67	69	4	0	25	1.08
716107--716193	24	3.5	24	77	13	88	65	4	2	27	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716152--716212	15	4.3	14	75	17	54	72	3	0	24	1.00
716176--716269	44	2.1	45	80	7	102	71	4	1	23	1.10
716351--716441	28	3.2	27	72	14	62	26	4	5	63	1.35
716344--716798	68	6.6	67	73	17	256	26	2	4	65	1.25
716390--716638	69	3.7	66	75	14	211	25	3	4	66	1.25
716458--716761	9	34.9	9	67	22	97	26	1	4	66	1.23
716467--716513	23	2.1	22	84	4	58	23	2	0	74	0.93
716524--716602	41	1.9	42	87	7	117	27	0	5	67	1.12
716524--716600	19	3.9	19	68	24	52	27	0	5	67	1.12
716643--716705	20	3.3	19	72	12	58	26	1	7	63	1.31
716343--716680	137	2.5	136	78	8	321	27	2	4	65	1.26
716733--716780	21	2.4	19	80	13	51	25	2	2	70	1.09
716753--716804	20	2.6	20	84	6	70	26	0	0	73	0.84
716755--716804	21	2.4	20	87	9	73	24	0	0	76	0.80
716703--716788	29	3.0	29	76	10	95	24	1	3	70	1.09
722569--722610	22	1.9	22	100	0	84	38	14	2	45	1.58
726752--726781	2	15.0	2	100	0	60	50	0	0	50	1.00
727824--727867	16	2.8	16	96	0	79	36	0	9	54	1.32
734906--734944	13	3.0	13	92	0	69	35	17	15	30	1.91
734973--735039	14	5.2	14	76	18	65	38	10	26	23	1.87
734979--735024	23	2.0	23	95	0	83	34	10	30	23	1.89
735050--735080	10	3.1	10	90	0	53	41	6	29	22	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
735107--735243	53	2.6	53	95	1	238	27	16	18	37	1.92
735213--735283	20	3.5	20	77	11	74	29	14	16	39	1.88
735324--735363	21	1.9	21	85	10	55	40	10	12	37	1.77
738197--738370	32	5.5	31	74	12	131	37	14	16	30	1.89
740716--740763	21	2.3	21	85	3	62	41	14	14	29	1.85
740748--740886	41	3.4	40	70	25	137	39	16	15	28	1.89
740716--740926	82	2.6	82	96	0	379	38	16	15	28	1.90
740788--740845	21	2.8	21	81	7	73	43	12	13	31	1.81
748636--748671	15	2.4	15	100	0	72	0	33	0	66	0.92
749173--749199	2	13.5	2	100	0	54	51	0	48	0	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13