genome.fa.s24.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold24
Parameters: 2 7 7 80 10 50 1000
Length:  3006277

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  10  of  19  ( 2215 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1650603--1650661	13	3.9	15	77	20	52	52	0	0	47	1.00
1650613--1650661	16	2.9	17	80	19	59	48	0	0	51	1.00
1652130--1652196	26	2.6	25	80	7	71	50	2	0	46	1.16
1652171--1652254	11	7.5	11	70	17	57	53	2	2	41	1.27
1652659--1652790	30	4.5	30	71	11	103	56	0	2	40	1.17
1654340--1654777	186	2.3	186	92	1	716	29	17	25	27	1.98
1655028--1655063	18	1.9	19	88	5	56	50	5	5	38	1.49
1655169--1655227	15	3.9	15	77	20	61	42	3	6	47	1.46
1655633--1655657	2	12.5	2	100	0	50	52	0	0	48	1.00
1655791--1656094	153	2.0	150	92	3	511	31	4	8	54	1.51
1656091--1656158	30	2.3	29	80	10	75	44	0	2	52	1.16
1656572--1656610	17	2.4	16	86	4	51	56	2	0	41	1.13
1657465--1657519	23	2.5	22	80	17	60	58	7	3	30	1.43
1657801--1657856	22	2.6	21	84	15	71	35	0	0	64	0.94
1657804--1657867	19	3.1	20	81	16	69	40	0	0	59	0.97
1659718--1659761	2	21.5	2	95	4	79	47	2	0	50	1.13
1660503--1660535	3	10.7	3	93	6	57	30	0	3	66	1.06
1660709--1660755	2	23.5	2	85	8	60	51	4	0	44	1.21
1660706--1660751	23	2.0	23	91	0	74	50	6	0	43	1.28
1661190--1661267	24	3.2	24	81	3	95	8	3	53	33	1.50
1661190--1661251	12	5.2	12	76	0	61	8	3	53	35	1.47
1661276--1661317	6	7.0	6	88	0	66	16	0	61	21	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1661288--1661356	18	3.9	17	71	19	52	15	4	57	21	1.55
1661234--1661380	30	4.7	30	75	11	107	14	3	57	23	1.53
1661421--1661653	30	7.8	30	79	0	259	20	5	52	21	1.66
1661391--1661656	60	4.4	60	83	0	325	21	5	53	20	1.65
1661391--1661645	120	2.1	120	99	0	501	20	5	52	21	1.66
1661571--1661734	78	2.1	78	84	0	211	22	4	52	20	1.65
1661421--1661683	60	4.4	60	85	0	364	20	5	52	20	1.66
1661421--1661692	30	9.1	29	75	5	211	20	5	52	21	1.66
1661679--1661872	30	6.5	30	80	1	210	23	6	49	20	1.72
1661679--1662118	60	7.1	60	75	9	237	23	6	50	20	1.70
1661601--1661758	78	2.0	78	88	0	235	23	5	51	20	1.67
1661511--1661831	138	2.3	138	90	1	491	23	5	50	20	1.69
1661817--1661915	42	2.4	42	94	3	173	22	6	49	22	1.71
1661767--1661971	102	2.0	102	84	5	272	23	5	49	21	1.71
1661869--1662106	120	2.0	120	83	1	298	23	5	50	19	1.68
1662090--1662148	18	3.3	18	73	17	59	13	5	50	30	1.63
1661886--1662115	90	2.6	89	80	8	252	24	5	50	19	1.68
1661859--1662181	30	10.6	30	74	7	188	21	4	50	22	1.67
1662066--1662220	66	2.3	66	79	8	163	15	4	51	28	1.63
1662192--1662238	24	2.0	24	86	0	67	8	8	53	29	1.61
1662243--1662296	18	3.3	18	66	28	57	9	12	51	25	1.70
1662212--1662424	30	7.1	30	79	10	204	10	10	52	26	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1662291--1662326	18	2.0	18	89	10	56	13	5	55	25	1.60
1662305--1662426	24	5.5	24	63	23	68	11	8	50	29	1.67
1662192--1662424	117	2.0	117	92	0	385	10	9	51	27	1.68
1662245--1662425	87	2.1	84	91	3	290	11	9	50	28	1.69
1662395--1662430	12	3.0	12	87	0	54	11	2	50	36	1.53
1662270--1662451	87	2.1	87	87	0	256	12	8	52	26	1.68
1662938--1662994	28	2.0	28	100	0	114	36	14	14	35	1.86
1664415--1665717	266	5.0	264	80	8	1282	35	19	17	28	1.94
1666729--1666762	16	2.1	17	88	5	52	38	2	0	58	1.13
1670597--1670664	32	2.2	30	81	7	73	63	0	0	36	0.95
1670613--1670720	45	2.3	45	80	12	121	60	0	0	39	0.97
1670789--1670819	2	15.5	2	93	0	53	54	0	0	45	0.99
1675364--1675393	14	2.1	15	93	6	53	16	0	83	0	0.65
1676195--1676223	2	14.5	2	100	0	58	48	0	0	51	1.00
1676780--1676830	16	3.1	17	73	18	54	41	1	0	56	1.10
1676777--1676840	32	2.0	33	84	9	87	39	1	0	59	1.07
1680831--1680871	20	2.0	21	86	13	59	46	0	0	53	1.00
1680959--1680996	7	5.7	7	96	3	62	44	0	0	55	0.99
1681211--1681251	19	2.2	19	86	8	57	31	0	2	65	1.05
1681779--1681808	15	1.9	16	93	6	53	60	0	0	40	0.97
1681769--1681811	16	2.6	17	82	10	54	53	0	0	46	1.00
1682365--1682641	153	1.8	151	80	1	329	48	7	7	35	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1682995--1683039	14	3.2	14	81	12	65	26	0	2	71	0.98
1683081--1683145	19	3.5	19	77	10	62	38	3	3	55	1.31
1683525--1683553	12	2.4	12	100	0	58	37	0	0	62	0.96
1683539--1683590	18	2.7	18	80	16	52	34	1	0	63	1.06
1683690--1683752	31	2.0	32	84	3	83	34	11	3	50	1.54
1683975--1683999	13	1.9	13	100	0	50	40	0	0	60	0.97
1684050--1684090	17	2.4	18	76	12	50	53	0	0	46	1.00
1684240--1684264	3	8.3	3	100	0	50	32	0	0	68	0.90
1684787--1684855	14	4.7	15	77	20	58	34	0	0	65	0.93
1684809--1684884	28	2.9	27	73	16	79	40	0	0	59	0.98
1684816--1684877	14	5.0	13	84	13	53	41	0	0	58	0.98
1689339--1689381	14	3.0	14	78	18	52	46	0	0	53	1.00
1689321--1689366	22	2.2	20	88	7	65	45	0	0	54	0.99
1689324--1689381	29	2.0	30	89	3	91	48	0	0	51	1.00
1698604--1698663	21	2.7	22	77	15	61	46	0	0	53	1.00
1698696--1698786	11	9.1	10	73	21	68	24	1	1	73	0.96
1698709--1698786	27	2.8	28	80	16	90	24	1	0	74	0.89
1698720--1698776	17	3.1	17	71	28	53	26	1	0	71	0.95
1698698--1698778	40	2.1	39	88	9	121	24	1	1	72	0.99
1706215--1706264	22	2.2	23	80	16	59	40	6	6	48	1.52
1711263--1711301	20	2.0	20	84	0	51	61	0	2	35	1.10
1712319--1712355	14	2.8	13	91	4	56	54	16	16	13	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1712616--1712666	19	2.9	17	75	13	50	49	0	0	50	1.00
1712869--1712893	2	12.5	2	100	0	50	48	0	0	52	1.00
1712949--1712978	14	2.1	15	93	6	53	70	0	3	26	1.03
1714609--1714684	39	2.0	38	87	7	109	53	0	1	44	1.08
1715288--1715348	15	3.9	15	72	19	54	49	0	1	49	1.10
1715284--1715324	4	10.5	4	84	10	50	46	0	0	53	1.00
1715309--1715356	25	2.0	23	84	8	60	56	0	2	41	1.11
1721638--1721672	17	2.0	17	88	5	52	48	0	0	51	1.00
1721646--1721700	28	1.9	29	82	10	69	45	1	1	50	1.22
1722017--1722069	20	2.5	21	71	17	56	56	0	0	43	0.99
1727064--1727115	27	1.9	27	84	7	70	46	1	0	51	1.12
1727224--1727260	5	8.0	5	82	17	53	62	0	0	37	0.96
1727224--1727257	14	2.5	14	90	4	52	61	0	0	38	0.96
1727311--1727355	22	2.1	22	83	4	56	48	0	2	48	1.13
1727539--1727582	16	2.8	17	83	13	58	70	0	0	29	0.88
1727541--1727580	12	3.3	12	86	10	55	70	0	0	30	0.88
1727514--1727614	29	3.4	28	75	15	87	64	0	1	33	1.05
1727799--1727833	16	2.2	16	95	5	63	85	0	2	11	0.69
1729213--1729269	14	4.3	14	80	10	57	50	0	0	49	1.00
1729467--1729496	14	2.1	15	93	6	53	36	3	0	60	1.14
1731122--1731166	16	2.8	16	79	0	54	44	0	0	55	0.99
1731122--1731185	32	2.0	30	82	14	76	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1731411--1731441	2	15.5	2	100	0	62	48	0	0	51	1.00
1731692--1731739	25	2.0	24	84	12	62	52	0	0	47	1.00
1731703--1731747	15	3.1	15	81	9	58	51	0	0	48	1.00
1732128--1732252	20	7.2	18	67	22	63	33	0	3	63	1.11
1732140--1732210	32	2.3	30	87	7	97	35	0	5	59	1.21
1732189--1732268	6	13.5	6	72	16	51	35	0	1	63	1.02
1732194--1732261	25	2.8	26	82	12	92	33	0	0	66	0.92
1732649--1732696	24	2.0	24	83	0	60	41	0	0	58	0.98
1732798--1732860	26	2.3	26	84	10	74	41	1	0	57	1.08
1732800--1732860	28	2.2	29	86	11	85	40	1	0	57	1.08

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19