genome.fa.s24.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold24
Parameters: 2 7 7 80 10 50 1000
Length:  3006277

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  3  of  19  ( 2215 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
285232--285335	29	3.6	28	76	18	81	44	0	0	55	0.99
285171--285319	71	2.1	72	78	14	159	44	0	0	55	0.99
285179--285335	28	5.9	27	67	27	97	43	0	0	56	0.99
285483--285526	22	2.0	22	100	0	88	40	18	13	27	1.88
285659--285694	13	2.8	13	95	0	63	41	0	0	58	0.98
285643--285692	13	3.5	16	80	20	58	34	0	0	66	0.92
286850--286899	21	2.4	22	80	6	59	60	0	0	40	0.97
286824--286901	22	3.4	22	76	15	68	56	0	0	43	0.99
286852--286907	22	2.7	21	75	8	60	57	1	0	41	1.09
286962--287040	9	7.9	10	73	22	60	51	0	0	48	1.00
286973--287040	5	13.4	5	74	22	54	50	0	0	50	1.00
286980--287127	15	9.6	15	76	17	117	50	1	0	47	1.14
286991--287072	5	15.6	5	70	9	56	52	0	0	47	1.00
286994--287108	59	1.9	59	85	3	160	51	0	0	46	1.13
287368--287416	26	1.9	25	87	4	71	53	0	0	46	1.00
287374--287462	37	2.4	37	81	12	94	56	0	0	43	0.99
287978--288230	134	1.9	134	89	0	389	41	7	7	42	1.62
287974--288273	134	2.2	132	81	5	320	44	6	7	41	1.59
288112--288387	151	1.8	151	83	1	365	43	9	9	38	1.70
289756--289814	26	2.2	28	85	8	79	50	0	1	47	1.11
290166--290228	14	4.3	14	74	9	54	46	1	1	50	1.20
290445--290490	24	2.0	22	83	8	56	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
291920--291955	2	18.0	2	94	0	63	52	0	0	47	1.00
292128--292209	31	2.6	31	76	1	83	6	26	2	64	1.29
292593--293296	316	2.2	316	78	4	713	32	18	25	23	1.97
294488--294643	78	2.0	78	93	0	267	28	21	15	33	1.94
301087--301158	17	4.3	17	76	15	69	37	0	0	62	0.95
301093--301161	22	3.0	22	85	10	86	36	0	0	63	0.94
301075--301152	27	3.0	26	78	14	81	35	0	0	64	0.94
301098--301164	12	5.9	12	81	13	72	34	0	0	65	0.93
301088--301158	5	13.8	5	73	20	58	38	0	0	61	0.96
306000--306024	2	12.5	2	100	0	50	48	0	0	52	1.00
305950--306049	48	2.1	48	94	3	175	41	12	4	43	1.60
306306--306352	20	2.4	19	82	7	58	53	2	0	44	1.12
313103--313137	18	1.9	18	100	0	70	51	0	0	48	1.00
313106--313138	6	5.5	6	86	13	50	54	0	0	45	0.99
321335--321378	20	2.2	20	84	8	54	43	15	11	29	1.82
322243--322285	2	21.5	2	100	0	86	0	51	0	48	1.00
322573--322623	12	4.2	12	75	9	50	60	1	0	37	1.08
322609--322644	17	2.1	17	89	5	54	50	0	0	50	1.00
322919--322947	3	9.7	3	100	0	58	34	0	0	65	0.93
323216--323267	14	3.4	14	76	19	50	59	0	0	40	0.97
323214--323254	18	2.3	18	86	0	55	63	0	0	36	0.95
323197--323285	19	5.2	18	70	21	57	53	0	1	44	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
323703--323777	15	5.1	15	77	16	68	48	1	1	49	1.18
324987--325032	21	2.3	20	85	10	67	50	0	0	50	1.00
324999--325050	18	3.0	18	83	10	56	48	0	0	51	1.00
325181--325240	19	3.3	19	76	17	56	66	0	0	33	0.92
325622--325651	3	10.3	3	92	7	53	66	0	0	33	0.92
325625--325651	14	1.9	14	100	0	54	66	0	0	33	0.92
325969--326013	15	3.1	14	78	9	54	51	0	0	48	1.00
327024--327102	11	6.6	11	74	16	59	58	0	0	41	0.98
327026--327082	13	4.6	12	79	16	55	59	0	0	40	0.97
327024--327126	24	4.0	26	75	17	74	58	0	0	39	1.11
327024--327102	6	12.0	7	75	20	57	58	0	0	41	0.98
327024--327102	18	4.4	19	76	17	71	58	0	0	41	0.98
327044--327102	22	2.8	21	82	14	68	55	0	0	44	0.99
327477--327508	12	2.8	12	95	4	57	62	0	0	37	0.95
327484--327543	30	1.9	32	90	6	97	61	0	1	36	1.06
327486--327540	18	3.1	17	79	10	65	61	0	1	36	1.06
327492--327580	31	2.9	30	80	8	83	55	0	1	43	1.07
329299--329367	32	2.2	32	83	0	84	24	11	13	50	1.74
329321--329367	16	2.9	16	78	12	60	21	8	12	57	1.62
330893--330930	17	2.1	19	85	9	53	57	2	5	34	1.35
332196--332225	14	2.1	15	93	6	53	36	0	0	63	0.95
332219--332257	19	2.0	20	90	5	62	46	0	0	53	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333253--333300	14	3.3	15	77	11	55	52	4	2	41	1.32
333233--333293	28	2.3	27	83	13	74	52	3	0	44	1.17
333299--333353	25	2.2	25	83	9	67	63	0	1	34	1.05
333318--333355	17	2.2	18	90	4	60	63	0	0	36	0.95
334071--334148	27	2.9	26	74	18	70	42	0	0	57	0.98
334060--334152	18	5.2	19	69	21	74	44	0	0	55	0.99
335322--335402	29	2.7	29	77	12	83	56	0	1	41	1.07
335747--335791	20	2.3	20	80	3	56	46	2	0	51	1.13
336697--336780	37	2.3	37	87	4	116	53	1	2	42	1.21
337598--337631	2	17.0	2	100	0	68	50	0	0	50	1.00
339632--339699	32	2.3	29	79	18	77	60	1	0	38	1.06
339642--339714	32	2.2	33	85	9	105	54	1	0	43	1.08
340641--340672	13	2.4	14	94	5	57	56	0	3	40	1.15
343291--343320	14	2.2	13	94	5	51	26	0	0	73	0.84
343509--343550	13	2.9	14	82	10	50	40	2	0	57	1.12
346864--346908	23	2.0	23	90	0	72	53	0	2	44	1.13
347341--347411	27	2.6	28	86	6	92	46	23	5	23	1.74
349291--349336	21	2.1	22	84	4	58	19	30	19	30	1.97
351788--351833	20	2.3	20	84	0	56	32	4	52	10	1.56
352003--352045	21	2.0	22	81	4	52	48	2	13	34	1.56
352077--352121	2	22.5	2	100	0	90	51	0	0	48	1.00
352904--352945	22	1.9	22	85	9	59	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362558--362608	12	3.9	12	78	16	57	43	5	11	39	1.66
362564--362620	27	2.1	27	90	0	87	40	5	19	35	1.74
365210--365612	202	2.0	202	99	0	797	32	14	14	38	1.87
374357--374399	18	2.5	17	85	7	59	48	0	0	51	1.00
380606--380661	27	2.1	27	86	0	76	37	5	3	53	1.41
381558--381599	22	2.0	21	86	13	59	61	0	0	38	0.96
381690--381730	21	2.0	21	85	0	55	34	2	2	60	1.23
382047--382081	2	17.5	2	100	0	70	51	0	0	48	1.00
382423--382512	45	2.0	47	93	4	157	35	11	3	50	1.55
383133--383164	3	10.7	3	100	0	64	65	0	0	34	0.93
383163--383223	3	20.3	3	100	0	122	34	0	0	65	0.93
384657--384695	19	2.1	19	90	4	62	23	0	0	76	0.78
384657--384711	26	2.1	26	86	6	76	20	1	1	76	0.97
384665--384706	19	2.2	19	83	8	50	21	0	2	76	0.90
384989--385045	17	3.4	17	68	4	53	28	7	5	59	1.45
385443--385495	19	2.7	20	79	8	63	28	1	0	69	0.99
385591--385648	15	4.0	14	78	8	62	46	0	0	53	1.00
390592--390676	27	3.3	25	73	15	75	52	0	0	47	1.00
391760--391793	17	1.9	18	88	5	52	44	5	0	50	1.26
391753--391802	22	2.2	22	79	13	57	42	6	2	50	1.38
396934--396988	29	1.9	28	82	10	67	34	7	1	56	1.38
397252--397337	8	10.4	8	67	20	52	60	3	0	36	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397247--397331	16	5.1	17	69	21	63	60	3	0	36	1.14
397247--397335	33	2.7	33	78	18	103	60	3	0	35	1.13
397714--397757	21	2.1	21	91	8	72	43	0	0	56	0.99
398167--398238	8	8.4	8	73	24	58	40	0	2	56	1.13
398174--398238	34	2.0	34	87	6	98	40	0	3	56	1.15
398167--398233	27	2.5	27	81	9	75	38	0	2	58	1.14
398202--398240	19	2.0	19	85	14	53	48	0	2	48	1.15
398228--398276	18	2.9	18	72	27	54	46	0	0	53	1.00
398215--398303	42	2.1	43	81	6	101	47	1	0	51	1.08
405944--405995	17	3.1	17	81	10	63	50	3	1	44	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19