genome.fa.s24.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold24
Parameters: 2 7 7 80 10 50 1000
Length:  3006277

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  4  of  19  ( 2215 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405948--406041	33	2.6	37	75	18	99	50	3	5	41	1.41
406451--406489	13	2.9	13	85	7	51	33	0	0	66	0.92
410750--410791	17	2.5	17	80	7	50	69	4	0	26	1.08
411794--411846	18	2.8	19	75	18	56	62	0	0	37	0.96
411893--411951	25	2.2	28	80	14	72	59	3	3	33	1.31
412123--412203	21	3.9	21	71	16	62	41	1	14	41	1.54
412341--412400	25	2.5	24	73	7	59	56	3	0	40	1.16
412350--412415	19	3.6	19	67	28	54	56	3	0	40	1.15
412344--412424	36	2.3	36	80	18	98	58	2	0	39	1.12
412353--412416	18	3.6	18	70	25	55	57	3	0	39	1.14
412896--412932	15	2.5	15	90	0	56	54	2	2	40	1.29
413367--413413	19	2.5	19	86	6	60	44	0	0	55	0.99
413369--413412	13	3.5	13	81	6	54	43	0	0	56	0.99
418410--418464	27	2.1	26	86	10	76	56	0	1	41	1.10
424431--424476	15	2.9	16	83	9	58	52	0	0	47	1.00
424954--425028	18	4.1	18	67	24	50	36	0	2	61	1.10
425483--425536	25	2.3	23	81	15	65	25	5	1	66	1.23
427821--427859	2	19.5	2	100	0	78	51	0	0	48	1.00
428301--428350	25	2.0	25	100	0	100	56	0	8	36	1.29
429050--429303	135	1.9	135	79	6	291	43	10	10	36	1.73
429464--429506	18	2.3	19	92	4	70	37	9	0	53	1.33
430764--430856	30	3.0	29	73	16	80	38	2	0	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430766--430831	21	3.2	20	80	14	73	34	0	0	65	0.93
430765--430828	10	6.5	10	74	15	62	35	0	0	64	0.94
432659--432694	2	18.0	2	100	0	72	50	0	0	50	1.00
433711--433760	13	3.6	13	82	15	64	56	0	0	44	0.99
438538--438583	15	3.1	15	83	0	65	21	36	6	34	1.80
439179--439223	18	2.6	18	82	3	56	66	2	2	28	1.15
439543--439577	16	2.2	16	94	0	61	45	0	2	51	1.16
444233--444936	94	7.8	90	81	8	636	32	27	17	22	1.97
444235--444954	62	12.1	56	77	12	351	32	27	17	23	1.97
444233--444936	28	23.5	30	79	9	595	32	27	17	22	1.97
445878--445955	20	3.9	20	80	6	86	35	14	8	41	1.77
449210--449245	17	2.3	15	90	9	54	33	2	0	63	1.08
451622--451724	55	1.9	55	89	2	163	30	18	8	42	1.80
451947--451987	21	2.0	21	90	9	66	58	0	0	41	0.98
452736--452793	24	2.3	27	82	11	77	37	0	0	62	0.96
457120--457170	2	25.5	2	100	0	102	0	49	0	50	1.00
457283--457314	11	2.9	11	95	0	55	65	0	0	34	0.93
461442--461483	11	3.8	11	75	12	50	54	0	0	45	0.99
461431--461480	22	2.2	23	96	3	93	58	0	0	42	0.98
462111--462187	35	2.2	35	80	2	82	53	0	2	44	1.14
462644--462751	30	3.6	30	82	9	139	42	1	0	55	1.10
462652--462751	26	3.6	26	77	16	101	44	2	0	54	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463594--463639	19	2.3	21	88	7	69	69	4	0	26	1.07
464913--464970	21	2.8	21	78	0	62	65	1	1	31	1.13
470797--470843	20	2.3	21	85	10	62	29	0	2	68	1.02
470822--470901	28	2.8	29	76	10	76	40	2	2	55	1.27
489566--489595	14	2.2	13	94	5	51	80	0	20	0	0.72
494706--494771	31	2.1	31	97	0	123	45	10	3	40	1.54
496566--496605	20	2.0	20	90	0	62	50	0	0	50	1.00
501556--501595	21	2.0	21	85	14	57	55	0	2	42	1.13
501554--501612	22	2.7	22	80	17	61	54	0	3	42	1.17
501775--501826	15	3.6	14	82	7	59	63	3	1	30	1.23
501909--501946	16	2.4	17	82	13	53	10	21	31	36	1.87
502402--502437	12	3.0	12	87	0	54	50	2	0	47	1.15
505400--505424	12	2.1	12	100	0	50	32	8	32	28	1.86
505806--505846	21	2.0	21	85	9	57	58	2	0	39	1.11
506949--506985	3	12.3	3	100	0	74	32	0	0	67	0.91
507628--507680	27	2.0	27	81	7	63	26	0	1	71	0.96
507842--507887	19	2.5	19	78	3	58	47	0	0	52	1.00
509032--509091	29	2.2	27	85	11	79	61	0	1	36	1.06
509499--509590	26	3.6	25	73	5	76	54	0	0	45	0.99
510804--510865	31	1.9	32	81	12	74	45	3	4	46	1.40
511651--511702	3	17.3	3	100	0	104	32	0	0	67	0.91
512722--512779	23	2.4	24	72	13	57	44	0	1	53	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
513016--513093	29	2.8	28	75	5	77	41	7	3	47	1.50
518240--519780	769	2.0	770	93	0	2604	28	19	17	33	1.95
521155--521226	33	2.2	33	87	2	99	44	5	5	44	1.50
522183--522251	29	2.5	28	70	13	70	49	1	0	49	1.09
525087--525148	11	5.3	11	76	17	54	32	0	0	67	0.91
525088--525132	22	2.0	22	87	12	65	26	0	0	73	0.84
525087--525147	12	5.0	13	77	15	51	32	0	0	67	0.91
525064--525145	37	2.2	37	85	8	105	29	1	1	68	1.05
525511--525551	17	2.4	17	91	0	64	65	0	0	34	0.93
525522--525578	25	2.2	28	78	12	68	59	0	0	40	0.97
526063--526135	30	2.4	29	77	11	76	43	1	0	54	1.08
526319--526379	21	2.9	22	78	11	65	45	0	0	54	1.00
526317--526391	31	2.4	32	76	10	75	48	0	0	52	1.00
526589--526615	2	13.5	2	100	0	54	51	0	0	48	1.00
527082--527146	25	2.5	28	73	19	68	49	0	1	49	1.10
527364--527419	26	2.2	26	80	3	60	39	3	12	44	1.60
527897--527980	33	2.6	30	78	12	87	51	2	3	42	1.32
527897--527982	16	5.5	15	79	5	73	51	2	3	43	1.31
527933--527982	15	3.3	15	81	10	57	50	4	2	44	1.32
528116--528175	31	1.9	31	89	0	93	58	0	0	41	0.98
528113--528173	16	3.9	16	77	12	63	59	0	0	40	0.98
528112--528178	15	4.3	15	73	5	62	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528799--528859	27	2.2	27	82	2	77	39	0	1	59	1.08
528799--528885	24	3.7	25	68	25	64	40	0	1	58	1.05
528844--528909	34	1.9	34	81	6	80	43	1	1	53	1.19
529379--529432	22	2.3	24	79	20	69	29	0	0	70	0.88
533803--533851	23	2.1	23	100	0	98	67	8	8	16	1.40
533803--533857	23	2.5	22	94	5	94	61	9	10	18	1.54
534771--534845	20	3.8	20	80	3	80	40	12	13	34	1.81
534768--534845	40	2.0	39	87	2	111	39	12	12	34	1.82
535661--535704	23	1.9	23	95	0	79	29	20	22	27	1.99
535455--536881	145	10.1	144	85	6	1287	23	17	32	26	1.96
535487--536885	110	12.4	111	82	7	878	23	17	32	26	1.96
535455--536881	28	50.5	28	85	5	1278	23	17	32	26	1.96
537894--537923	10	3.0	10	100	0	60	0	0	10	90	0.47
538199--538250	23	2.2	24	82	3	61	5	11	11	71	1.31
544358--544407	24	2.1	24	96	0	91	70	8	6	16	1.32
545325--545399	20	3.8	20	80	3	80	40	12	13	34	1.81
545322--545399	40	2.0	39	87	2	111	39	12	12	34	1.82
548777--548888	1	112.0	1	72	0	71	84	8	3	3	0.84
548778--548882	23	4.8	23	75	15	98	84	7	3	3	0.84
548779--548887	45	2.5	42	82	8	130	84	8	3	3	0.85
548779--548885	21	5.0	21	81	12	110	84	8	3	3	0.86
548780--548889	43	2.5	44	81	13	129	83	8	4	3	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
550330--550779	30	15.3	29	76	10	328	29	29	16	24	1.97
550389--550441	27	2.0	27	92	0	88	33	33	16	15	1.90
550539--550760	88	2.6	88	94	2	378	33	27	18	20	1.96
550326--550795	58	8.0	59	76	10	331	29	29	17	23	1.97
550800--551094	49	6.0	49	81	10	325	25	25	16	32	1.96
550892--550984	43	2.2	43	98	0	177	26	25	17	30	1.97
550894--550962	22	3.2	22	62	25	56	26	26	17	30	1.97
550846--551037	92	2.0	95	92	4	318	26	25	16	32	1.96
550938--551091	52	2.9	53	80	6	186	24	24	16	35	1.94
551901--551967	33	2.0	33	88	0	98	34	11	13	40	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19