genome.fa.s24.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold24
Parameters: 2 7 7 80 10 50 1000
Length:  3006277

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   

This is table  19  of  19  ( 2215 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2879184--2879284	42	2.4	43	96	1	186	29	13	17	38	1.89
2880282--2880327	22	2.1	22	84	8	58	67	4	0	28	1.10
2880296--2880388	42	2.2	41	84	3	114	55	9	2	32	1.44
2880552--2880680	38	3.4	38	73	6	118	44	14	10	31	1.79
2881945--2881973	2	14.5	2	100	0	58	51	48	0	0	1.00
2889150--2889184	5	7.0	5	86	0	52	34	20	5	40	1.76
2890157--2890182	2	13.0	2	100	0	52	50	0	0	50	1.00
2898334--2898361	1	28.0	1	100	0	56	0	100	0	0	0.00
2910681--2910781	51	2.0	51	98	0	193	29	21	3	44	1.70
2922630--2922688	25	2.3	26	91	5	93	52	13	5	28	1.61
2925707--2925742	3	12.0	3	100	0	72	33	0	0	66	0.92
2926432--2926486	24	2.3	24	84	3	76	36	14	0	49	1.44
2927310--2927362	2	26.5	2	96	0	97	49	0	50	0	1.00
2932035--2932072	17	2.2	18	85	4	51	73	2	13	10	1.19
2932041--2932081	18	2.4	17	91	4	64	70	2	17	9	1.25
2934765--2934789	6	4.2	6	100	0	50	16	36	16	32	1.90
2935296--2935330	2	17.5	2	100	0	70	51	0	0	48	1.00
2953577--2953613	9	4.1	9	96	0	65	86	0	13	0	0.57
2953574--2953610	12	2.9	13	88	11	51	89	0	10	0	0.49
2953574--2953646	22	3.3	22	79	7	69	78	1	17	2	0.95
2955326--2955552	97	2.3	97	84	4	289	28	28	11	30	1.92
2957634--2957659	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2957614--2957651	20	1.9	20	88	0	58	31	7	18	42	1.79
2963848--2963874	13	2.1	13	100	0	54	29	14	14	40	1.86
2966365--2966391	13	2.1	13	100	0	54	29	14	14	40	1.86
2966376--2966431	19	2.8	20	84	7	71	32	16	17	33	1.92
2966476--2966539	13	5.4	13	76	17	68	37	14	15	32	1.87
2966460--2966555	33	2.9	32	93	6	149	36	12	18	32	1.89
2966494--2966555	20	3.5	20	71	28	75	38	11	19	30	1.87
2970822--2970868	24	1.9	25	86	4	69	82	6	6	4	0.92
2971799--2972002	58	3.6	58	81	1	178	28	8	12	50	1.70
2971767--2971979	58	3.7	57	80	3	167	28	10	13	47	1.76
2971874--2972008	56	2.4	57	83	2	164	29	8	11	49	1.70
2981360--2981387	2	14.0	2	100	0	56	0	50	0	50	1.00
2983940--2984269	161	2.0	162	89	1	509	34	23	11	29	1.91
2990160--2990198	21	1.9	20	89	5	60	35	10	15	38	1.81
2993001--2993043	13	3.3	13	86	0	59	48	18	9	23	1.76
2994958--2995028	36	2.0	36	88	0	106	32	23	14	29	1.94
3001244--3001271	14	2.0	14	100	0	56	42	0	14	42	1.45
3001382--3001452	14	5.1	14	71	10	56	23	2	32	40	1.69
3001382--3001449	28	2.4	27	83	9	75	23	2	33	39	1.70
3001566--3001594	13	2.1	14	93	6	51	6	0	48	44	1.29
3001631--3001682	7	7.4	7	82	0	50	13	11	53	21	1.70
3001625--3001670	21	2.2	20	80	3	56	17	8	50	23	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3001670--3004615	7	409.7	7	76	15	1461	5	8	45	40	1.59
3003188--3004569	34	38.0	37	75	18	797	5	13	41	40	1.67
3003160--3004585	57	24.6	57	74	18	561	5	13	41	40	1.67
3004565--3004703	8	18.5	8	79	15	81	5	2	52	39	1.38
3004494--3005787	15	84.9	14	71	22	630	6	3	50	39	1.47
3001672--3005787	7	561.0	7	72	16	1173	6	7	46	39	1.56
3005635--3005760	48	2.5	48	83	11	148	7	1	50	41	1.39
3005899--3005939	7	5.9	7	83	11	57	2	0	56	41	1.13
3005899--3005939	15	2.9	14	86	10	57	2	0	56	41	1.13
3005979--3006274	7	41.4	7	76	18	242	4	14	42	38	1.65
3005979--3006274	15	20.7	14	76	18	242	4	14	42	38	1.65

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19

The End!