genome.fa.s412.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold412
Parameters: 2 7 7 80 10 50 1000
Length:  4645160

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  10  of  32  ( 3728 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1438235--1438297	32	2.0	32	87	6	92	47	0	0	52	1.00
1438213--1438320	27	3.8	27	70	18	85	43	0	0	56	0.99
1438316--1438353	14	2.7	14	88	8	51	44	2	0	52	1.14
1438236--1438343	33	3.3	30	73	11	90	44	0	0	55	0.99
1438320--1438353	14	2.3	15	90	5	52	44	2	0	52	1.16
1438965--1439069	5	21.4	5	70	18	51	35	0	1	61	1.13
1439008--1439060	11	5.0	11	79	9	56	35	0	0	64	0.94
1438980--1439060	31	2.7	30	78	5	83	37	0	0	62	0.95
1438983--1439060	36	2.1	37	83	6	97	37	0	0	62	0.95
1439004--1439056	26	2.0	28	88	7	83	37	0	0	62	0.96
1439424--1439495	30	2.4	30	83	6	83	45	0	2	51	1.15
1439437--1439502	13	5.2	13	69	22	50	45	0	1	53	1.09
1439732--1439785	26	2.1	26	82	0	63	46	0	7	46	1.31
1444453--1444503	19	2.5	20	81	9	59	50	0	0	49	1.00
1452432--1452464	3	11.0	3	100	0	66	33	0	0	66	0.92
1453373--1453412	2	20.0	2	100	0	80	50	0	0	50	1.00
1453563--1453673	47	2.4	44	72	14	107	41	0	0	57	1.05
1453580--1453652	27	3.0	24	76	15	71	47	1	0	50	1.09
1453606--1453659	21	2.7	20	88	5	81	46	0	0	53	1.00
1453606--1453659	20	2.7	21	83	11	69	46	0	0	53	1.00
1453819--1453866	19	2.6	20	78	18	59	54	0	0	45	0.99
1453827--1453860	18	1.9	17	88	5	50	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1464037--1464219	34	5.4	34	88	0	260	25	7	26	39	1.83
1464037--1464219	102	1.8	101	92	1	312	25	7	26	39	1.83
1464524--1464586	19	3.3	19	90	0	90	28	17	19	34	1.94
1467817--1468001	34	5.5	34	88	0	264	25	7	26	40	1.82
1467817--1468001	102	1.8	101	92	1	316	25	7	26	40	1.82
1471002--1471052	24	2.2	22	82	6	66	66	0	0	33	0.92
1471022--1471058	16	2.2	17	90	9	58	67	0	0	32	0.91
1471400--1471438	21	1.9	21	84	5	53	10	2	7	79	1.02
1472502--1472539	14	2.9	14	84	11	53	36	0	0	63	0.95
1472511--1472582	23	3.1	23	80	9	85	43	0	0	56	0.99
1472532--1472621	32	2.8	33	78	13	105	46	1	0	52	1.07
1472506--1472596	36	2.7	34	81	10	98	45	0	0	54	0.99
1476461--1476485	13	1.9	13	100	0	50	48	0	0	52	1.00
1477286--1477361	36	2.1	37	82	7	93	47	1	0	51	1.09
1477324--1477378	29	1.9	29	82	10	69	47	0	0	52	1.00
1478170--1478211	18	2.4	17	88	4	57	59	0	0	40	0.97
1478799--1478916	59	2.0	59	96	0	218	41	21	26	11	1.86
1480639--1480682	22	2.0	22	81	0	52	45	0	0	54	0.99
1482226--1482270	22	2.0	22	87	8	65	35	0	0	64	0.94
1484273--1484341	31	2.2	31	79	5	77	60	0	0	39	0.97
1484273--1484319	15	3.1	15	80	16	53	61	0	0	38	0.96
1485431--1485480	24	2.0	25	84	3	66	38	2	0	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1486076--1486136	23	2.7	21	80	12	59	32	0	14	52	1.42
1486511--1486542	3	10.7	3	100	0	64	65	0	0	34	0.93
1486728--1486768	20	2.0	21	85	9	57	51	0	2	46	1.14
1486867--1486897	4	7.8	4	92	0	53	77	0	0	22	0.77
1488191--1488288	15	6.4	15	66	20	51	37	0	1	61	1.03
1488192--1488287	32	3.1	32	76	10	92	36	0	1	62	1.02
1488652--1488836	50	3.7	50	80	4	167	29	17	14	37	1.90
1488677--1488863	100	1.9	100	82	4	234	29	17	18	34	1.94
1488673--1488861	50	3.8	50	81	4	211	30	17	17	33	1.94
1493244--1493398	50	3.1	50	88	0	247	29	19	18	33	1.95
1493812--1493838	2	13.5	2	100	0	54	51	0	0	48	1.00
1496477--1496525	20	2.5	20	81	15	59	57	0	0	42	0.99
1496477--1496525	18	2.5	20	83	9	57	57	0	0	42	0.99
1498059--1498135	13	6.0	13	78	7	86	55	0	0	44	0.99
1498066--1498145	25	3.2	25	94	1	133	58	0	0	41	0.98
1498147--1498182	17	2.1	17	89	0	54	58	2	2	36	1.27
1500444--1500495	20	2.8	20	77	11	65	55	0	0	44	0.99
1500855--1500911	22	2.6	22	74	0	60	40	3	3	52	1.35
1501643--1501695	23	2.2	26	83	10	67	52	1	3	41	1.30
1502462--1502500	2	19.5	2	100	0	78	51	0	0	48	1.00
1506141--1506166	2	13.0	2	100	0	52	50	0	0	50	1.00
1511138--1511203	27	2.4	27	85	7	80	25	7	19	46	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1511286--1511339	20	2.7	20	82	0	72	14	53	1	29	1.52
1512036--1512064	2	15.0	2	92	7	51	51	0	0	48	1.00
1512691--1512736	16	2.9	16	86	0	65	52	10	0	36	1.37
1513193--1513228	2	18.5	2	88	5	56	44	0	2	52	1.15
1514170--1514231	29	2.1	30	85	11	85	41	0	0	58	0.98
1514867--1514894	2	14.0	2	100	0	56	50	0	0	50	1.00
1515041--1515116	39	1.9	39	84	5	100	67	1	2	28	1.12
1515065--1515127	27	2.3	27	83	8	74	63	0	4	31	1.15
1515071--1515135	28	2.2	28	82	17	80	64	0	4	30	1.14
1515050--1515122	22	3.5	22	69	19	57	65	1	2	30	1.15
1515077--1515156	27	2.8	27	81	12	81	60	0	5	35	1.19
1515418--1515448	2	15.5	2	100	0	62	48	0	0	51	1.00
1515844--1515886	2	21.5	2	100	0	86	48	0	0	51	1.00
1516604--1516628	3	8.3	3	100	0	50	32	0	0	68	0.90
1517203--1517232	2	15.0	2	92	0	51	50	0	46	3	1.18
1520138--1520168	11	2.7	11	95	5	53	70	0	0	29	0.87
1520219--1520272	20	2.8	20	73	21	53	57	0	0	42	0.98
1520243--1520292	23	2.3	21	80	19	50	66	2	0	32	1.03
1521278--1521336	32	1.9	31	86	6	84	38	0	6	54	1.27
1522993--1523045	14	3.5	14	72	18	52	52	1	1	43	1.23
1523017--1523063	17	2.8	16	81	15	51	59	0	0	40	0.97
1524767--1524807	15	2.8	16	82	10	52	48	0	2	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1524814--1524847	16	2.1	17	88	5	52	50	0	0	50	1.00
1524797--1524859	26	2.4	26	81	7	65	50	1	0	47	1.10
1526239--1526286	24	2.0	24	87	4	69	14	6	2	77	1.06
1526234--1526288	16	3.6	15	75	17	51	14	5	1	78	1.02
1526234--1526295	24	2.7	23	78	14	65	19	4	1	74	1.09
1526299--1526356	24	2.5	22	78	10	71	75	5	1	17	1.06
1527479--1527524	2	23.0	2	90	0	74	45	0	4	50	1.21
1528473--1528516	18	2.3	20	92	7	74	54	0	0	45	0.99
1528441--1528538	51	2.0	49	82	11	119	50	0	0	50	1.00
1529834--1529915	23	3.5	22	76	5	65	48	2	4	43	1.37
1529851--1529952	45	2.2	45	82	6	116	55	3	3	36	1.37
1530627--1530669	15	2.7	15	82	10	50	37	0	0	62	0.95
1530632--1530691	27	2.2	26	80	8	66	38	0	0	61	0.96
1530655--1530694	20	2.0	20	85	9	55	47	0	0	52	1.00
1530683--1530736	23	2.3	24	77	3	56	46	0	0	53	1.00
1530654--1530724	30	2.3	33	77	18	82	46	0	0	53	1.00
1530752--1530788	7	5.4	7	81	18	51	32	0	0	67	0.91
1531185--1531250	34	1.9	34	96	0	123	30	13	3	53	1.55
1531655--1531696	21	2.0	20	86	4	57	76	2	2	19	1.01
1532733--1532766	11	3.4	10	88	11	52	38	2	0	58	1.13
1532733--1532775	21	2.0	21	86	8	61	39	2	0	58	1.11
1533065--1533108	21	2.1	21	86	0	61	36	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1533202--1533238	15	2.4	16	86	13	60	29	0	0	70	0.88
1533206--1533245	15	2.9	14	89	10	64	32	0	0	67	0.91
1533237--1533261	12	2.1	12	100	0	50	48	0	0	52	1.00
1533886--1533965	31	2.6	31	76	11	92	35	11	6	47	1.64
1534550--1534605	29	1.9	29	85	0	76	37	7	17	37	1.78
1534630--1534680	21	2.4	21	83	0	66	50	0	3	45	1.20
1535207--1535245	15	2.6	15	80	11	53	58	0	2	38	1.12
1535463--1535502	21	1.9	21	89	0	62	65	0	0	35	0.93
1535475--1535526	10	4.5	11	75	17	52	63	0	0	36	0.95
1535493--1535531	15	2.6	15	80	15	53	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32