genome.fa.s412.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold412
Parameters: 2 7 7 80 10 50 1000
Length:  4645160

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  2  of  32  ( 3728 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271642--271669	2	14.0	2	100	0	56	50	0	0	50	1.00
275445--275479	2	17.5	2	100	0	70	48	0	0	51	1.00
295179--295203	4	6.2	4	100	0	50	52	0	24	24	1.48
296757--296789	6	5.5	6	96	0	57	66	15	3	15	1.37
297178--297220	14	3.1	14	80	6	52	51	0	2	46	1.13
297187--297240	22	2.5	21	79	8	63	51	0	0	48	1.00
298477--298522	2	23.0	2	84	0	56	43	4	2	50	1.34
298586--298611	2	13.0	2	100	0	52	50	0	0	50	1.00
299017--299081	5	13.4	5	81	12	66	76	3	18	1	0.99
301909--301937	9	3.3	9	90	9	51	51	0	0	48	1.00
307354--307393	2	20.0	2	89	0	62	50	5	0	45	1.23
307887--307912	2	13.0	2	100	0	52	50	0	0	50	1.00
308337--308377	18	2.3	18	87	8	57	46	2	0	51	1.14
308645--308678	17	2.0	17	88	0	50	35	0	0	64	0.94
308662--308720	22	2.7	21	82	12	66	50	0	0	49	1.00
309034--309072	17	2.3	17	86	0	51	61	0	0	38	0.96
310320--310438	58	2.1	58	95	0	211	38	19	10	31	1.86
318918--319058	73	1.9	73	91	0	228	25	24	12	38	1.90
328361--328492	67	2.0	67	100	0	264	33	16	17	32	1.93
335072--335110	2	19.0	2	89	5	60	46	2	2	48	1.29
336310--336358	24	2.0	24	88	7	73	57	0	0	42	0.99
337696--337725	2	15.5	2	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337699--337724	13	2.0	13	100	0	52	46	0	0	53	1.00
337697--337725	15	1.9	15	100	0	58	48	0	0	51	1.00
338350--338375	2	13.0	2	100	0	52	50	0	0	50	1.00
338556--338618	22	2.8	23	81	13	94	47	30	9	12	1.73
342822--342886	13	5.1	14	70	22	63	41	0	0	58	0.98
342844--342899	13	4.4	13	75	8	53	41	0	0	58	0.98
343021--343122	24	4.3	24	71	16	70	47	2	0	49	1.23
357452--357480	2	15.0	2	92	7	51	48	0	0	51	1.00
361448--361501	24	2.2	24	80	0	63	51	0	5	42	1.25
366377--366406	2	15.0	2	92	0	51	46	3	0	50	1.18
367991--368024	9	3.7	9	84	7	50	11	88	0	0	0.52
370007--370037	2	15.5	2	93	0	53	48	3	0	48	1.17
372376--372406	2	15.5	2	100	0	62	51	0	0	48	1.00
374298--374332	17	2.1	16	89	5	52	0	40	2	57	1.14
375769--375798	15	2.0	15	93	0	51	30	0	0	70	0.88
376402--376508	43	2.5	43	79	11	103	40	0	0	58	1.04
376430--376482	28	1.9	28	92	3	90	37	1	0	60	1.08
376457--376505	18	2.8	17	85	11	64	40	0	0	59	0.98
376467--376530	18	3.4	18	71	14	58	39	0	0	60	0.97
376457--376539	42	2.0	40	79	11	85	40	0	1	57	1.06
376471--376555	38	2.2	38	81	10	91	40	0	1	58	1.05
376490--376558	25	2.9	25	79	10	65	42	0	1	56	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376477--376582	34	3.2	34	69	24	84	40	0	1	57	1.09
376486--376597	31	3.2	37	68	25	91	41	0	1	57	1.09
377089--377137	19	2.5	20	80	12	57	40	0	0	59	0.98
377085--377137	20	2.6	21	77	17	58	41	0	0	58	0.98
377376--377425	3	17.0	3	95	4	93	0	34	0	66	0.92
378945--378985	4	10.2	4	94	0	73	48	26	0	24	1.51
380085--380181	49	2.0	48	84	13	128	54	0	0	45	0.99
380226--380277	23	2.2	24	86	3	70	59	3	0	36	1.16
382961--383001	21	2.0	21	85	0	55	53	9	2	34	1.47
384128--384168	22	1.9	21	85	14	57	39	2	0	58	1.11
387264--387615	176	2.0	177	92	1	589	34	18	12	34	1.89
393998--394035	2	19.0	2	100	0	76	50	0	0	50	1.00
400854--400927	20	3.7	20	81	3	85	14	28	17	39	1.89
400854--400932	41	1.9	41	86	0	113	15	29	17	37	1.90
405394--405436	21	2.0	21	100	0	86	25	32	4	37	1.77
411739--411883	71	2.0	71	94	0	254	39	7	19	33	1.80
414118--414221	21	4.9	21	67	13	61	59	1	0	38	1.08
414127--414208	43	1.9	43	82	5	103	57	2	0	40	1.12
415719--415757	16	2.4	17	82	4	53	51	2	0	46	1.14
418086--418127	22	1.9	22	85	9	59	40	0	0	59	0.97
418389--418597	50	4.2	50	75	9	176	34	10	15	38	1.82
418389--418597	100	2.1	100	79	5	217	34	10	15	38	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418658--418775	50	2.4	49	80	5	112	36	11	18	33	1.86
419714--419779	32	2.1	32	91	0	105	56	6	3	34	1.40
420279--420343	28	2.3	27	80	19	71	44	0	0	55	0.99
422648--422694	5	9.4	5	77	9	51	68	0	0	31	0.90
422653--422689	18	2.0	18	89	5	56	70	0	0	29	0.88
423788--423815	2	14.0	2	100	0	56	50	0	0	50	1.00
424899--424930	13	2.4	14	94	5	57	53	0	3	43	1.16
425413--425488	25	3.1	24	78	15	77	59	0	0	40	0.98
426585--426614	2	15.0	2	100	0	60	50	0	0	50	1.00
431471--431563	32	2.9	32	80	0	105	49	5	3	41	1.41
437722--437790	2	34.0	2	72	8	50	47	5	1	44	1.35
439162--439229	28	2.4	27	75	18	66	57	0	0	42	0.98
439162--439230	14	4.9	13	72	13	57	57	0	0	42	0.98
439382--439414	14	2.4	14	94	0	57	54	0	9	36	1.32
449669--449708	2	20.0	2	94	0	71	47	0	2	50	1.14
453017--453150	67	2.0	67	100	0	268	20	29	16	32	1.95
457032--457071	21	2.0	20	85	5	53	30	2	2	65	1.19
468167--468207	18	2.2	18	86	8	55	58	0	0	41	0.98
472435--472474	2	20.0	2	100	0	80	50	0	0	50	1.00
479901--479931	13	2.5	13	94	5	55	61	0	0	38	0.96
490014--490058	17	2.8	17	83	12	51	60	0	2	37	1.09
490361--490394	15	2.4	14	90	5	50	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
491189--491222	3	11.3	3	100	0	68	35	0	0	64	0.94
491308--491337	16	1.9	16	93	6	53	76	0	0	23	0.78
491317--491392	28	2.7	26	76	9	71	64	2	1	31	1.15
491375--491424	19	2.5	20	80	9	57	50	0	6	44	1.26
491395--491446	28	1.9	28	84	7	72	51	0	3	44	1.19
491435--491487	26	2.0	28	85	7	74	56	11	1	30	1.45
491594--491648	19	2.9	19	81	7	67	54	0	0	45	0.99
491971--492009	4	9.2	4	83	10	51	30	0	0	69	0.89
492249--492333	29	2.9	30	76	16	104	45	1	0	52	1.08
492435--492487	26	2.0	26	82	7	63	49	1	0	49	1.12
500288--500313	13	2.0	13	100	0	52	61	7	0	30	1.24
502020--502054	18	2.0	17	88	5	52	20	37	11	31	1.88
504130--504180	19	2.5	20	84	6	68	43	0	0	56	0.99
510046--510115	2	35.0	2	100	0	140	50	0	0	50	1.00
510150--510229	28	3.2	23	76	20	72	47	0	0	52	1.00
510398--510451	24	2.2	26	83	12	69	55	5	0	38	1.23
510871--510912	3	13.0	3	85	14	57	69	0	30	0	0.89
510871--510910	7	6.0	7	94	5	66	70	0	30	0	0.88
511598--511655	28	2.1	27	87	3	80	39	1	0	58	1.08
511898--511922	13	1.9	13	100	0	50	72	4	0	24	1.02
517464--517568	13	8.4	13	67	26	59	56	0	0	43	0.99
517466--517533	29	2.3	29	80	16	79	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517456--517626	87	1.9	91	85	9	244	56	0	0	43	1.03
517480--517561	34	2.3	35	79	12	87	58	0	0	41	0.98
517520--517598	33	2.6	29	76	11	77	54	0	0	45	0.99
517571--517608	18	2.2	18	86	9	53	57	0	0	42	0.98
518052--518128	36	2.1	36	97	0	145	58	6	0	35	1.24
521619--521708	40	2.2	40	79	14	96	47	0	1	51	1.08
522921--522950	3	10.0	3	100	0	60	66	0	0	33	0.92
524498--524536	2	19.5	2	100	0	78	51	0	0	48	1.00
524536--524574	2	19.5	2	100	0	78	51	0	48	0	1.00
537178--537203	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32