genome.fa.s412.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold412
Parameters: 2 7 7 80 10 50 1000
Length:  4645160

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  15  of  32  ( 3728 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2012940--2012974	2	17.5	2	100	0	70	51	0	0	48	1.00
2013396--2013438	21	2.2	20	83	8	52	37	18	16	27	1.92
2013456--2013487	2	16.0	2	100	0	64	50	0	50	0	1.00
2013601--2013635	12	2.9	12	95	0	61	85	0	2	11	0.69
2014673--2014718	24	2.0	23	83	8	58	39	0	0	60	0.97
2014963--2014991	7	4.3	7	95	4	51	41	0	0	58	0.98
2018078--2018118	18	2.5	17	85	14	52	70	2	0	26	0.99
2018140--2018218	25	3.0	26	69	12	63	44	0	3	51	1.19
2018195--2018240	16	2.8	17	87	9	60	43	0	0	56	0.99
2018195--2018265	20	3.8	18	74	18	56	40	0	0	59	0.98
2018481--2018505	12	2.1	12	100	0	50	76	0	0	24	0.80
2018483--2018511	15	1.9	15	100	0	58	75	0	0	24	0.80
2018493--2018537	19	2.2	19	84	11	54	73	4	6	15	1.21
2018713--2018777	32	2.0	33	84	3	87	50	1	3	44	1.26
2020003--2020051	21	2.3	21	100	0	80	38	10	8	42	1.68
2022979--2023042	29	2.2	30	83	10	80	46	3	4	45	1.39
2025247--2025308	6	10.5	6	72	27	53	32	4	0	62	1.16
2025558--2025594	18	2.0	19	89	5	58	35	8	0	56	1.29
2025778--2025828	16	3.3	15	76	17	50	45	0	0	54	0.99
2025784--2025837	16	3.4	16	75	10	56	51	0	0	48	1.00
2032102--2032140	2	19.5	2	100	0	78	51	0	0	48	1.00
2032676--2032714	17	2.2	18	86	4	53	28	2	0	69	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2033218--2033261	10	4.1	11	91	8	65	43	0	0	56	0.99
2033218--2033260	2	23.5	2	82	17	58	44	0	0	55	0.99
2033937--2033961	2	12.5	2	100	0	50	48	0	0	52	1.00
2034139--2034195	28	2.0	29	82	3	71	56	0	0	43	0.99
2034649--2034696	21	2.3	20	86	10	62	47	0	0	52	1.00
2034882--2034926	2	23.0	2	81	4	56	46	2	4	46	1.35
2036563--2036587	12	2.1	12	100	0	50	8	16	32	44	1.76
2042038--2042107	36	1.9	37	82	8	90	55	1	0	42	1.08
2042517--2042565	24	2.0	24	84	0	62	53	0	4	42	1.20
2044115--2044154	19	2.1	19	86	9	55	57	0	5	37	1.21
2044215--2044266	18	2.9	18	97	0	95	57	3	0	38	1.17
2046637--2046677	19	2.1	19	86	4	55	31	2	12	53	1.51
2047332--2047386	17	3.4	17	75	25	55	50	1	3	43	1.30
2047332--2047399	17	4.2	16	74	23	54	50	1	2	45	1.26
2047372--2047411	11	3.6	11	79	0	53	52	0	0	47	1.00
2047721--2047778	24	2.5	23	80	5	64	53	1	0	44	1.10
2048200--2048263	27	2.5	26	80	14	78	53	0	0	46	1.00
2053679--2053733	18	3.1	18	80	12	60	60	1	0	38	1.08
2055212--2055268	26	2.1	27	93	3	98	26	17	17	38	1.92
2057607--2057638	3	10.7	3	100	0	64	68	0	0	31	0.90
2061176--2061221	22	2.0	24	83	8	60	23	15	2	58	1.48
2064752--2064783	2	16.0	2	93	0	55	50	3	0	46	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2064831--2064864	2	17.0	2	100	0	68	50	0	0	50	1.00
2065598--2065664	16	4.2	15	76	12	62	56	4	2	35	1.35
2066099--2066134	16	2.1	18	90	10	58	61	0	0	38	0.96
2067420--2067450	13	2.4	13	94	0	53	41	3	0	54	1.16
2068457--2068482	13	2.0	13	100	0	52	53	0	0	46	1.00
2068843--2068888	20	2.3	20	85	3	58	54	0	4	41	1.20
2069548--2069623	33	2.4	32	77	16	86	55	3	0	40	1.18
2074351--2074421	15	4.7	15	75	3	63	35	11	33	19	1.88
2079408--2079451	16	2.9	15	87	12	63	50	0	0	50	1.00
2079473--2079525	19	2.8	19	75	16	56	45	0	0	54	0.99
2079515--2079553	21	1.9	20	85	15	53	64	0	0	35	0.94
2080282--2080333	18	2.9	17	81	18	61	59	1	0	38	1.08
2080970--2081059	17	5.2	17	71	12	67	37	0	1	61	1.04
2080994--2081061	12	5.8	12	78	13	52	33	0	1	64	1.02
2081223--2081255	6	5.5	6	100	0	66	45	0	0	54	0.99
2082429--2082479	25	2.0	27	84	7	70	27	0	1	70	0.98
2082432--2082479	17	2.8	16	81	12	60	22	0	2	75	0.91
2082488--2082548	26	2.3	27	83	8	72	44	3	0	52	1.17
2082931--2082978	18	2.6	19	78	21	66	37	0	0	62	0.95
2082932--2082996	27	2.3	28	80	12	80	38	0	0	61	0.96
2086829--2086863	17	2.1	17	88	0	52	37	0	0	62	0.95
2087161--2087266	30	3.5	31	72	11	94	48	5	4	41	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2089570--2089610	19	2.2	19	95	0	73	14	12	9	63	1.52
2090383--2090506	17	8.3	15	65	24	50	40	0	0	58	1.03
2090354--2090478	17	7.4	17	70	20	77	38	0	0	60	1.02
2090354--2090481	21	6.5	19	69	21	68	38	0	0	60	1.02
2091083--2091125	15	2.9	15	80	20	54	46	0	0	53	1.00
2091094--2091131	11	3.2	12	88	11	60	50	0	0	50	1.00
2091122--2091207	21	4.0	21	72	8	84	50	1	0	48	1.08
2091080--2091154	15	5.0	15	71	23	52	46	0	0	53	1.00
2091080--2091163	29	2.9	29	77	7	82	50	0	0	50	1.00
2091642--2091706	16	3.7	18	78	14	64	63	0	0	36	0.95
2091659--2091706	11	4.4	11	79	10	53	66	0	0	33	0.92
2091644--2091809	33	5.5	30	69	23	84	59	0	0	40	1.02
2091669--2091760	26	3.5	26	77	7	87	59	0	0	40	0.97
2091700--2091749	17	3.0	17	72	13	50	52	0	0	48	1.00
2091723--2091774	25	2.0	25	85	7	68	57	0	0	42	0.98
2091661--2091791	59	2.2	58	79	11	142	60	0	0	39	0.97
2092086--2092127	3	14.3	3	95	5	77	66	0	0	33	0.92
2094606--2094672	24	2.8	23	71	13	55	55	0	4	40	1.20
2094829--2094869	7	5.9	7	100	0	82	0	26	0	73	0.84
2094828--2094877	21	2.5	20	90	6	82	0	28	0	72	0.86
2095011--2095043	5	6.6	5	100	0	66	0	18	0	81	0.68
2095674--2095702	13	2.1	14	93	6	51	17	0	0	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2096228--2096293	28	2.3	30	75	15	68	42	0	0	57	0.98
2096250--2096323	31	2.3	32	79	9	89	50	0	0	50	1.00
2096704--2096754	26	2.0	26	88	0	75	27	7	1	62	1.33
2096717--2096766	20	2.5	21	71	12	52	28	4	2	66	1.21
2096818--2096896	30	2.7	29	80	7	97	63	0	0	36	0.95
2096840--2096865	12	2.2	12	100	0	52	65	0	0	34	0.93
2096819--2096910	30	3.3	27	75	17	80	61	0	0	38	0.96
2097580--2097637	22	2.7	21	81	10	55	39	0	0	60	0.97
2097546--2097616	30	2.3	29	77	13	72	40	0	0	59	0.98
2097593--2097629	19	1.9	19	89	10	58	40	0	0	59	0.97
2097652--2097699	22	2.2	22	100	0	96	62	0	0	37	0.95
2098559--2098591	16	1.9	18	88	11	52	54	3	0	42	1.15
2099856--2099933	2	39.0	2	89	0	120	47	0	3	48	1.20
2100220--2100268	21	2.3	21	86	6	64	53	2	2	42	1.24
2101722--2101747	2	13.0	2	100	0	52	50	0	0	50	1.00
2101863--2101905	18	2.5	16	81	11	50	48	2	0	48	1.14
2102384--2102424	17	2.3	18	83	8	57	46	4	0	48	1.23
2103198--2103278	40	2.0	41	97	2	155	41	7	20	29	1.80
2103507--2103550	22	2.0	22	86	4	61	54	2	6	36	1.40
2103717--2103764	24	2.0	24	84	4	62	47	0	0	52	1.00
2103721--2103769	16	3.1	15	83	11	62	48	0	0	51	1.00
2106791--2106825	12	2.8	12	91	4	52	40	5	28	25	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2107283--2107333	20	2.5	20	93	0	84	35	9	11	43	1.75
2107978--2108048	31	2.3	29	80	17	81	40	0	0	59	0.98
2107998--2108049	15	3.4	15	79	12	61	40	0	0	59	0.97
2108069--2108124	6	9.5	6	73	11	53	30	0	0	69	0.89
2108065--2108124	12	5.1	12	82	9	79	28	0	0	71	0.86
2108558--2108621	29	2.2	29	83	10	78	39	0	0	60	0.97
2108942--2109042	38	2.6	38	92	1	175	50	2	0	46	1.16
2109059--2109088	15	1.9	16	93	6	53	56	0	0	43	0.99
2109564--2109614	26	2.0	26	100	0	102	5	15	23	54	1.63
2112246--2112300	26	2.0	27	82	6	67	47	0	1	50	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32