genome.fa.s412.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold412
Parameters: 2 7 7 80 10 50 1000
Length:  4645160

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  21  of  32  ( 3728 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2867163--2867187	13	1.9	13	100	0	50	36	16	16	32	1.90
2881720--2881747	13	2.2	13	100	0	56	39	17	14	28	1.89
2882622--2883352	49	15.7	49	74	12	402	29	17	26	26	1.98
2882708--2882990	150	1.9	147	86	2	404	33	16	24	25	1.96
2882960--2883250	39	7.0	39	76	13	258	24	20	26	28	1.99
2882999--2883350	39	7.9	46	78	12	242	26	19	26	27	1.99
2882914--2883206	87	3.4	87	90	0	451	26	19	26	27	1.99
2883045--2883293	126	2.0	126	94	0	435	25	19	28	26	1.99
2883405--2883595	32	6.1	32	80	9	162	34	15	31	19	1.93
2883361--2883565	32	6.4	33	76	13	178	34	14	32	19	1.91
2883481--2883538	27	2.2	26	84	6	80	32	13	31	22	1.93
2883448--2883565	60	2.0	58	86	3	164	34	15	30	19	1.93
2883541--2883909	30	11.9	30	82	6	375	30	15	30	23	1.95
2883546--2883917	62	6.0	61	81	8	430	30	15	30	23	1.95
2883546--2883917	61	6.0	60	81	7	431	30	15	30	23	1.95
2883548--2883917	125	3.0	122	82	7	451	30	15	30	23	1.95
2883539--2883907	187	2.0	186	86	4	512	30	15	30	23	1.95
2887110--2887238	52	2.5	52	98	0	249	30	17	16	35	1.92
2887110--2887358	52	4.9	51	78	13	226	32	16	17	33	1.93
2887247--2887305	13	4.9	13	73	26	67	35	13	16	33	1.88
2887397--2887424	13	2.2	13	100	0	56	39	14	14	32	1.86
2887141--2887422	151	1.9	150	82	7	356	32	15	18	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2887379--2887443	33	2.0	33	90	3	105	38	10	12	38	1.78
2888636--2888662	13	2.1	13	100	0	54	29	14	14	40	1.86
2888617--2888681	33	2.0	32	93	3	112	26	15	16	41	1.88
2888646--2888702	19	2.9	19	86	2	78	33	15	15	35	1.90
2894927--2894955	13	2.2	13	100	0	58	27	13	17	41	1.87
2896786--2896877	40	2.2	40	84	5	112	38	2	27	32	1.69
2896818--2896889	20	3.7	19	70	15	58	34	1	30	33	1.67
2896803--2896889	40	2.2	40	87	4	131	35	2	32	29	1.70
2897427--2897453	13	2.1	13	100	0	54	29	14	14	40	1.86
2897408--2897472	32	2.0	33	87	3	96	27	16	15	40	1.89
2897437--2897492	19	2.9	19	89	2	85	32	16	16	35	1.90
2897523--2897575	20	2.7	20	91	5	81	39	13	18	28	1.88
2909226--2909320	20	4.8	20	100	0	190	38	10	18	31	1.85
2909335--2909384	20	2.5	20	83	3	64	44	12	14	30	1.81
2910537--2910603	29	2.4	28	78	14	75	38	1	7	52	1.39
2910732--2910780	13	3.8	13	86	0	71	65	8	2	24	1.31
2915229--2915263	9	3.8	9	88	3	52	22	14	8	54	1.67
2918505--2918605	50	2.0	50	98	0	193	33	12	18	34	1.89
2919276--2919301	13	2.0	13	100	0	52	30	15	15	38	1.88
2919350--2919426	20	3.8	20	79	8	75	28	16	14	40	1.88
2921847--2921884	13	2.9	13	96	0	67	31	15	18	34	1.92
2923967--2923997	15	2.1	15	93	0	53	12	22	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2928051--2928109	19	3.0	18	78	14	55	25	11	20	42	1.86
2928133--2928209	20	3.8	20	79	8	75	28	16	14	40	1.88
2928543--2928616	21	3.6	20	87	3	85	39	13	16	31	1.87
2928644--2928698	20	2.7	20	77	2	56	29	12	10	47	1.76
2931064--2931421	97	3.7	97	84	2	434	26	25	12	35	1.91
2934146--2934187	21	2.0	21	90	0	66	35	23	9	30	1.87
2936467--2936509	21	2.0	22	82	13	54	53	6	11	27	1.63
2937591--2937850	79	3.3	79	91	1	396	35	12	23	28	1.92
2937591--2937888	79	3.8	79	89	1	393	33	13	24	28	1.93
2937846--2937990	51	2.8	51	81	0	182	31	11	27	30	1.91
2937966--2938049	28	3.1	28	82	3	100	30	20	27	21	1.98
2938080--2938152	28	2.6	30	80	12	100	26	17	31	24	1.97
2937941--2938187	107	2.3	107	82	1	334	34	12	23	28	1.92
2938120--2938264	73	2.0	73	91	0	236	38	10	22	28	1.87
2938213--2938381	51	3.3	50	80	1	176	32	12	26	28	1.92
2940726--2940755	13	2.3	13	100	0	60	40	13	16	30	1.87
2941425--2941562	42	3.2	43	78	10	113	44	14	25	15	1.85
2941492--2941638	42	3.5	39	76	15	118	39	14	25	20	1.91
2941527--2941638	45	2.6	44	79	12	128	37	14	26	21	1.92
2941603--2941968	61	6.1	60	82	9	392	29	19	26	24	1.98
2941610--2941970	122	3.1	116	83	7	447	28	19	26	25	1.99
2941800--2941990	55	3.3	55	85	9	256	26	20	25	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2941741--2942294	272	2.1	266	88	3	817	25	19	28	26	1.99
2941998--2942166	61	2.9	61	82	8	208	26	20	27	25	1.99
2942008--2942257	55	4.4	55	85	3	284	23	20	28	28	1.98
2942008--2942257	110	2.2	113	85	5	319	23	20	28	28	1.98
2942234--2942338	39	2.7	39	96	1	192	25	15	35	23	1.94
2943384--2943480	1	97.0	1	75	0	77	0	1	12	86	0.62
2943397--2943480	24	3.5	24	87	6	127	0	0	13	86	0.56
2943384--2943480	22	4.3	21	83	14	122	0	1	12	86	0.62
2943384--2943475	33	2.8	32	84	12	116	0	1	13	85	0.64
2943384--2943480	32	3.1	31	83	5	115	0	1	12	86	0.62
2955885--2955956	20	3.6	20	76	0	72	41	11	12	34	1.78
2956518--2957275	28	26.0	28	83	10	873	22	18	31	27	1.97
2956518--2957274	232	3.2	233	88	4	1075	22	18	30	28	1.97
2956518--2957276	87	8.7	87	84	9	879	22	18	31	27	1.97
2958495--2958554	1	60.0	1	76	0	57	1	3	6	88	0.68
2958507--2958554	17	2.8	16	85	14	69	0	2	8	89	0.56
2958495--2958554	18	3.4	17	84	6	66	1	3	6	88	0.68
2969842--2969908	33	2.0	33	88	0	98	34	11	13	40	1.81
2969862--2969886	13	1.9	13	100	0	50	36	16	16	32	1.90
2969952--2969979	13	2.2	13	100	0	56	28	14	17	39	1.89
2969965--2970105	52	2.7	50	88	6	201	33	17	17	31	1.94
2969985--2970105	52	2.3	52	97	0	224	34	18	18	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2977399--2977426	1	28.0	1	100	0	56	100	0	0	0	0.00
2978364--2978445	30	2.7	31	88	1	112	25	28	18	28	1.98
2978399--2979408	34	30.7	33	76	15	781	20	32	12	33	1.91
2978766--2978817	27	1.9	27	96	0	95	23	38	17	21	1.93
2978394--2979406	62	15.4	69	89	7	1032	21	32	12	33	1.91
2979041--2979094	27	2.0	27	88	0	81	25	35	16	22	1.95
2979065--2979406	33	9.9	35	86	7	416	20	33	11	34	1.89
2978394--2979406	241	4.4	237	78	15	1003	21	32	12	33	1.91
2979478--2980137	49	13.7	49	84	7	825	24	25	17	32	1.97
2979478--2980203	92	7.4	98	92	4	1020	24	25	17	32	1.97
2981063--2981129	33	2.0	33	88	0	98	34	11	13	40	1.81
2981083--2981107	13	1.9	13	100	0	50	36	16	16	32	1.90
2981173--2981200	13	2.2	13	100	0	56	28	14	17	39	1.89
2981186--2981326	52	2.7	50	88	6	201	33	17	17	31	1.94
2981206--2981326	52	2.3	52	97	0	224	34	18	18	28	1.94
2984827--2984857	11	2.8	11	100	0	62	9	0	29	61	1.28
2986491--2986535	22	2.0	22	100	0	90	46	4	22	26	1.70
2988997--2989107	51	2.2	51	87	4	154	31	12	25	30	1.93
2988673--2989057	79	4.9	78	84	4	420	33	14	24	27	1.94
2989199--2989270	28	2.6	28	86	4	92	30	19	27	22	1.98
2989035--2989321	107	2.7	107	78	2	335	33	16	24	26	1.96
2989262--2989400	51	2.7	51	82	0	188	35	12	22	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2998944--2999009	28	2.4	27	76	19	73	37	3	10	48	1.53
3001729--3001754	13	2.0	13	100	0	52	38	15	15	30	1.88
3003973--3004017	21	2.1	21	84	8	56	53	4	20	22	1.63
3005821--3005851	15	2.1	15	93	0	53	48	16	22	12	1.80
3007861--3007940	20	3.8	20	75	15	79	26	15	15	43	1.85
3007926--3007964	13	3.0	13	96	0	69	30	17	15	35	1.91
3008085--3008131	21	2.3	21	79	20	55	34	19	4	42	1.70
3008087--3008129	20	2.2	19	84	16	52	32	18	4	44	1.71
3010508--3010533	13	2.0	13	100	0	52	38	15	15	30	1.88
3013281--3013333	20	2.7	20	96	0	97	45	7	15	32	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32