genome.fa.s412.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold412
Parameters: 2 7 7 80 10 50 1000
Length:  4645160

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  4  of  32  ( 3728 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667157--667265	47	2.4	47	80	15	131	58	0	0	41	0.98
667521--667575	26	2.1	26	83	12	69	38	0	0	61	0.96
667536--667595	11	6.0	10	74	18	54	31	1	0	66	1.01
667527--667562	15	2.3	16	90	4	56	38	0	0	61	0.96
667527--667559	17	2.0	17	88	5	50	39	0	0	60	0.97
668257--668308	16	3.2	16	75	20	54	48	0	0	51	1.00
668257--668306	14	3.3	14	75	20	55	48	0	0	52	1.00
668257--668309	15	3.2	18	73	26	62	47	0	0	52	1.00
669207--669300	22	4.6	21	74	15	63	53	1	0	45	1.07
670401--670441	20	2.0	20	90	0	64	43	0	0	56	0.99
670565--670618	27	2.0	27	82	7	65	42	3	0	53	1.18
671359--671393	17	2.1	17	89	10	54	28	0	0	71	0.86
671780--671828	24	2.0	25	84	4	64	40	0	0	59	0.98
672119--672168	12	3.7	14	74	15	52	36	2	0	62	1.07
672180--672256	34	2.2	34	82	11	86	54	0	2	42	1.14
675968--676019	23	2.3	23	83	3	61	46	0	0	53	1.00
676206--676235	9	3.3	9	95	0	51	53	0	0	46	1.00
677258--677315	24	2.3	25	85	5	73	32	0	0	67	0.91
679466--679515	22	2.4	21	84	15	68	52	0	0	48	1.00
679743--679787	14	3.7	13	81	18	53	48	0	0	51	1.00
679759--679847	33	2.7	35	78	15	100	56	0	0	43	0.99
679774--679847	22	3.4	22	75	14	73	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
679789--679841	16	3.2	16	73	21	56	58	0	0	41	0.98
682267--682316	2	25.0	2	87	0	73	0	44	0	56	0.99
692988--693016	13	2.2	13	100	0	58	31	0	0	68	0.89
693876--693922	19	2.8	16	79	17	58	40	0	2	57	1.11
693887--693929	19	2.3	18	96	4	77	39	0	0	60	0.97
693885--693937	7	8.2	6	80	19	54	37	1	0	60	1.08
693885--693937	13	4.1	12	77	22	54	37	1	0	60	1.08
696923--696998	28	2.6	29	85	8	100	51	5	6	36	1.51
697437--697462	5	5.2	5	100	0	52	80	0	0	19	0.71
697596--697626	8	4.0	8	95	4	55	90	0	9	0	0.46
698914--698954	21	2.0	19	86	13	55	60	2	0	36	1.10
699137--699172	2	18.0	2	100	0	72	50	0	0	50	1.00
700218--700242	2	12.5	2	100	0	50	48	0	0	52	1.00
701167--701206	18	2.3	18	95	4	73	80	5	5	10	1.02
702877--702909	7	4.7	7	100	0	66	54	0	0	45	0.99
703305--703396	46	2.0	46	81	8	107	50	0	0	50	1.00
706839--706863	2	12.5	2	100	0	50	52	0	0	48	1.00
708498--708572	14	5.3	14	80	6	71	41	9	10	38	1.72
708498--708672	29	6.1	29	73	12	103	41	10	10	37	1.74
708523--708615	14	6.5	14	71	13	64	39	8	10	40	1.71
708511--708592	28	2.9	27	79	12	85	39	7	9	43	1.65
708598--708749	29	5.3	29	72	9	105	42	12	12	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
708553--708805	115	2.2	115	76	12	250	42	11	10	35	1.75
709529--709599	33	2.3	30	83	11	81	43	1	8	46	1.42
709785--709849	31	2.1	30	82	2	76	52	1	4	41	1.31
710898--710944	17	2.8	17	83	3	60	63	0	0	36	0.94
711079--711137	19	3.2	19	79	13	61	47	0	0	52	1.00
711099--711140	22	1.9	22	90	0	66	42	0	0	57	0.99
711529--711567	6	6.2	6	82	11	51	38	0	0	61	0.96
711531--711578	13	3.7	13	86	5	53	45	0	0	54	0.99
711506--711565	26	2.3	27	83	11	72	38	1	1	58	1.18
711556--711616	25	2.5	24	76	10	61	54	1	1	42	1.20
717665--717704	20	2.0	20	95	4	73	50	15	0	35	1.44
724147--724244	42	2.3	42	80	13	112	55	0	0	44	0.99
724222--724277	17	3.4	16	76	16	60	50	0	0	50	1.00
724736--724807	37	1.9	37	100	0	144	37	25	8	29	1.85
726351--726376	12	2.2	12	100	0	52	53	23	15	7	1.67
728400--728476	15	4.7	17	70	15	56	57	0	1	41	1.07
728416--728513	21	4.5	22	68	24	64	53	0	1	45	1.07
728416--728519	32	3.1	33	83	12	106	51	0	0	47	1.07
732639--732677	2	19.5	2	100	0	78	51	0	0	48	1.00
738124--738165	16	2.6	16	78	14	50	35	0	2	61	1.09
738983--739029	21	2.2	21	77	7	51	70	0	0	29	0.88
740283--740350	10	6.9	10	74	15	61	48	1	1	48	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
741290--741341	18	2.8	18	78	16	54	63	3	0	32	1.12
741380--741421	16	2.6	16	88	11	59	42	0	0	57	0.99
742170--742217	20	2.3	21	79	17	55	39	0	4	56	1.19
742156--742267	8	12.6	8	69	23	57	36	0	2	60	1.11
742211--742271	11	5.5	11	77	11	63	31	0	1	67	1.01
742156--742248	28	3.4	27	78	8	82	36	0	3	60	1.13
742181--742261	20	3.9	22	73	18	75	34	0	3	61	1.14
742369--742393	2	12.5	2	100	0	50	48	0	52	0	1.00
742589--742650	25	2.5	23	78	14	63	43	1	0	54	1.09
749387--749442	2	28.0	2	92	0	85	44	0	3	51	1.18
757318--757343	12	2.2	12	100	0	52	84	0	15	0	0.62
758205--758284	3	26.7	3	81	5	72	1	41	0	57	1.07
758205--758284	18	4.4	18	82	6	90	1	41	0	57	1.07
758209--758290	24	3.4	24	86	0	110	1	41	0	57	1.06
767486--767520	13	2.6	13	90	4	52	2	0	88	8	0.61
767484--767522	11	3.5	11	89	6	53	2	0	87	10	0.65
767819--767871	16	3.3	16	71	7	54	37	0	7	54	1.29
767876--767904	12	2.4	12	100	0	58	51	0	13	34	1.42
770052--770125	9	8.0	9	73	8	51	37	0	2	59	1.12
770081--770138	14	4.3	14	73	20	52	29	0	6	63	1.20
775080--775256	59	3.0	59	94	0	300	27	20	18	33	1.96
777676--777702	9	3.0	9	100	0	54	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
777835--777900	20	3.3	20	79	12	73	48	1	0	50	1.10
777863--777909	21	2.3	20	81	3	58	48	2	0	48	1.13
777970--778012	18	2.4	18	80	0	50	32	0	2	65	1.06
779042--779091	25	2.0	26	84	4	66	48	2	6	44	1.39
784189--784234	17	2.7	17	75	21	51	28	2	2	67	1.14
784282--784316	18	2.0	18	94	5	63	42	0	0	57	0.99
784318--784365	21	2.4	21	86	10	66	54	0	0	45	0.99
784332--784433	26	3.7	27	69	20	77	53	0	0	45	1.06
784327--784448	57	2.1	57	81	11	144	53	0	3	43	1.17
784656--784705	21	2.3	22	83	10	59	52	4	0	44	1.20
785367--785470	15	6.9	15	69	18	74	39	0	0	60	0.97
785344--785451	30	3.6	30	83	8	114	40	0	0	59	0.98
785375--785470	28	3.6	25	75	20	70	40	0	0	59	0.97
785728--785769	18	2.3	18	80	8	50	42	0	0	57	0.99
785707--785796	20	4.3	20	64	16	58	50	0	0	50	1.00
785923--785960	20	1.9	20	88	0	58	50	5	0	44	1.24
786291--786371	34	2.4	34	90	8	123	45	0	3	50	1.19
786291--786374	17	5.1	16	76	12	73	44	0	3	52	1.18
786316--786374	16	3.6	16	76	15	66	38	0	3	57	1.15
790863--790895	16	2.0	17	88	5	50	48	39	3	9	1.50
794873--795006	67	2.0	67	98	0	259	36	16	14	32	1.89
797905--797931	12	2.2	12	100	0	54	33	18	25	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
798694--798746	16	3.1	19	70	30	64	49	0	0	50	1.00
801678--801715	15	2.4	16	83	16	53	65	0	0	34	0.93
801683--801719	14	2.5	16	87	12	53	64	0	0	35	0.94
802545--802603	4	13.8	4	86	13	66	28	0	0	71	0.87
803195--803252	17	3.6	16	70	22	50	48	0	0	51	1.00
803188--803308	30	3.9	31	71	19	83	51	0	0	47	1.06
804061--804098	19	2.0	19	100	0	76	47	10	15	26	1.78
804381--804409	3	9.7	3	100	0	58	31	0	0	68	0.89
805144--805181	15	2.5	15	80	16	51	52	0	0	47	1.00
805365--805403	18	2.2	18	85	0	51	46	2	0	51	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32