genome.fa.s412.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold412
Parameters: 2 7 7 80 10 50 1000
Length:  4645160

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   

This is table  26  of  32  ( 3728 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3737592--3737637	21	2.2	20	81	11	58	32	19	4	43	1.71
3739324--3739403	38	2.0	40	83	9	103	35	5	23	36	1.77
3740026--3740051	13	2.0	13	100	0	52	38	15	15	30	1.88
3741392--3741452	9	6.8	9	79	5	54	3	1	9	85	0.78
3741389--3741452	24	2.8	23	84	13	87	3	1	9	85	0.76
3741389--3741452	13	5.4	12	75	16	62	3	1	9	85	0.76
3741413--3741449	15	2.5	14	91	8	56	2	0	8	89	0.58
3749335--3749359	13	1.9	13	100	0	50	36	16	16	32	1.90
3749424--3749448	13	1.9	13	100	0	50	32	16	16	36	1.90
3749402--3749468	33	2.0	33	88	0	98	40	13	11	34	1.81
3750267--3750661	171	2.3	171	94	1	691	36	14	24	24	1.93
3750338--3750496	49	3.1	49	76	6	147	35	15	23	24	1.94
3750575--3751440	49	17.7	49	84	6	1087	31	17	26	24	1.97
3750513--3751440	101	9.4	98	89	6	1265	31	17	26	24	1.97
3751433--3751572	34	4.5	31	85	8	171	14	17	38	29	1.89
3751433--3751571	31	4.5	32	87	9	175	14	17	38	28	1.89
3751574--3751775	105	2.0	99	82	9	246	35	12	33	19	1.89
3751574--3751828	33	7.7	33	79	13	249	33	12	34	19	1.89
3751743--3751802	27	2.2	27	84	0	75	30	15	36	18	1.91
3751811--3751847	19	1.9	19	94	0	65	13	13	48	24	1.78
3751776--3751882	54	2.0	54	83	7	137	28	12	38	21	1.89
3751838--3752031	35	5.4	35	86	6	289	33	10	32	22	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3751828--3752034	72	2.8	73	95	0	380	33	11	33	22	1.89
3752011--3752092	30	2.7	31	90	1	121	28	18	28	25	1.98
3753033--3753066	1	34.0	1	93	0	59	0	2	0	97	0.19
3753130--3753159	11	2.7	11	94	0	51	0	10	0	90	0.47
3759911--3759935	13	1.9	13	100	0	50	36	16	16	32	1.90
3760000--3760024	13	1.9	13	100	0	50	32	16	16	36	1.90
3759978--3760044	33	2.0	33	88	0	98	40	13	11	34	1.81
3760581--3760631	22	2.4	22	83	9	61	23	21	0	54	1.44
3762236--3762335	34	2.9	36	86	8	145	30	26	10	34	1.89
3767076--3767204	63	2.1	63	89	4	199	36	9	17	36	1.82
3767366--3767402	18	2.1	18	89	0	56	21	5	21	51	1.68
3767574--3767663	25	3.7	24	76	15	69	52	2	1	44	1.20
3771772--3771816	2	22.5	2	100	0	90	0	48	0	51	1.00
3772881--3772914	2	17.0	2	100	0	68	50	0	0	50	1.00
3773919--3773958	19	2.2	18	86	4	53	42	0	2	55	1.13
3774867--3774907	2	22.0	2	83	14	52	56	0	0	43	0.99
3774867--3774907	9	4.4	10	79	14	52	56	0	0	43	0.99
3774866--3774907	21	1.9	21	90	9	66	57	0	0	42	0.99
3774864--3774912	10	4.5	11	82	12	66	57	0	0	42	0.99
3775243--3775314	35	2.2	30	79	15	81	58	0	2	38	1.13
3775290--3775341	20	2.6	21	84	9	72	57	0	0	42	0.98
3775284--3775383	44	2.2	45	84	10	123	57	2	0	41	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3775780--3775808	2	14.5	2	100	0	58	51	0	0	48	1.00
3781438--3781472	16	2.1	17	89	5	54	51	2	8	37	1.47
3783429--3783760	168	2.0	162	92	3	547	37	5	17	39	1.72
3784515--3784585	3	24.0	3	94	2	126	66	1	0	32	1.01
3786645--3786728	38	2.2	38	82	2	98	25	9	15	50	1.74
3786659--3786742	38	2.2	38	80	2	98	26	13	17	42	1.86
3786863--3786908	17	2.8	17	78	15	51	45	0	13	41	1.43
3790188--3790759	147	3.9	147	73	7	324	41	16	16	24	1.89
3792758--3793351	165	3.6	165	80	5	540	50	8	11	29	1.68
3797095--3797240	20	6.8	20	70	17	96	30	15	13	40	1.86
3797095--3797239	40	3.8	39	72	22	139	31	15	13	40	1.86
3797083--3797220	71	1.9	71	95	0	249	29	16	13	39	1.87
3799043--3799073	10	3.0	10	90	9	53	38	0	3	58	1.15
3800696--3801007	135	2.3	139	83	4	364	20	21	19	38	1.94
3800592--3801146	47	12.0	47	74	8	347	20	21	17	41	1.91
3801129--3801281	45	3.4	45	77	7	150	24	20	15	39	1.91
3802596--3802667	28	2.6	28	88	0	99	23	19	34	22	1.96
3802656--3802825	52	3.3	49	77	12	164	32	12	24	30	1.93
3802799--3802880	27	3.0	28	82	10	98	26	21	29	21	1.99
3805388--3805412	13	1.9	13	100	0	50	32	16	16	36	1.90
3805368--3805431	32	2.0	33	93	3	112	35	17	12	34	1.87
3805990--3809969	55	72.3	54	92	4	5960	20	20	30	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3806201--3806290	26	3.3	26	66	19	67	20	16	33	30	1.94
3806231--3806319	29	3.2	29	67	20	89	19	19	33	28	1.96
3806863--3806952	26	3.3	26	67	24	69	20	18	33	27	1.96
3807028--3807117	26	3.3	26	67	19	76	20	17	33	28	1.95
3807303--3807392	26	3.3	26	68	14	74	20	17	33	28	1.95
3807578--3807667	26	3.3	26	67	24	69	20	18	33	27	1.96
3807743--3807832	26	3.3	26	67	19	76	20	17	33	28	1.95
3808018--3808107	26	3.3	26	67	24	69	20	18	33	27	1.96
3808183--3808272	26	3.3	26	67	19	76	20	17	33	28	1.95
3808458--3808547	26	3.3	26	68	14	74	20	17	33	28	1.95
3808733--3808822	26	3.3	26	67	24	69	20	18	33	27	1.96
3808898--3808987	26	3.3	26	67	19	76	20	17	33	28	1.95
3809173--3809262	26	3.3	26	68	14	74	20	17	33	28	1.95
3809448--3809537	26	3.3	26	67	24	69	20	18	33	27	1.96
3809613--3809702	26	3.3	26	67	19	76	20	17	33	28	1.95
3810952--3811002	1	51.0	1	80	0	57	0	3	5	90	0.56
3823539--3823610	28	2.6	28	88	0	99	23	19	34	22	1.96
3823599--3823768	52	3.3	49	77	12	164	32	12	24	30	1.93
3823742--3823823	27	3.0	28	82	10	98	26	21	29	21	1.99
3826243--3826268	13	2.0	13	100	0	52	38	15	15	30	1.88
3826222--3826288	33	2.0	33	88	0	98	43	16	14	25	1.86
3826330--3826354	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3826311--3826373	32	2.0	32	96	0	117	36	15	12	34	1.86
3826308--3826376	19	3.9	19	78	21	87	39	14	11	34	1.82
3826431--3826487	21	2.7	21	97	0	105	36	19	10	33	1.86
3826492--3826534	1	43.0	1	92	0	59	4	2	0	93	0.43
3826490--3826537	16	3.1	16	85	8	73	12	4	0	83	0.79
3827078--3829561	55	45.1	53	92	4	3639	20	20	30	28	1.98
3827289--3827378	26	3.3	26	66	19	67	20	16	33	30	1.94
3827319--3827407	29	3.2	29	67	20	89	19	19	33	28	1.96
3827951--3828040	26	3.3	26	67	24	69	20	18	33	27	1.96
3828116--3828205	26	3.3	26	67	19	76	20	17	33	28	1.95
3828391--3828480	26	3.3	26	68	14	74	20	17	33	28	1.95
3828666--3828755	26	3.3	26	67	24	69	20	18	33	27	1.96
3828831--3828920	26	3.3	26	67	19	76	20	17	33	28	1.95
3829106--3829195	26	3.3	26	68	14	74	20	17	33	28	1.95
3829136--3829224	29	3.2	29	67	20	89	19	19	33	28	1.96
3829381--3829470	26	3.3	26	67	24	69	20	18	33	27	1.96
3829411--3829499	29	3.2	29	68	26	91	19	20	33	26	1.96
3835040--3835168	52	2.5	52	96	0	231	29	17	17	35	1.93
3835040--3835188	52	2.9	51	89	4	219	30	16	18	34	1.93
3835177--3835201	13	1.9	13	100	0	50	36	16	16	32	1.90
3836790--3836822	9	3.7	9	91	0	57	0	12	0	87	0.53
3837136--3837165	15	2.0	15	93	0	51	76	3	0	20	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3840223--3840247	12	2.1	12	100	0	50	56	0	16	28	1.41
3840685--3840729	21	2.1	22	91	4	74	28	15	2	53	1.54
3841828--3841887	20	2.9	21	82	5	86	50	15	10	25	1.74
3845233--3845276	13	3.5	12	87	3	61	84	2	13	0	0.73
3845236--3845282	21	2.2	22	77	7	53	78	2	17	2	0.94
3846413--3846741	92	3.6	91	79	8	355	28	25	13	32	1.94
3847622--3847709	20	4.8	19	72	21	80	29	15	12	42	1.84
3847622--3847689	33	2.1	33	94	0	118	27	16	13	42	1.85
3847640--3847670	13	2.4	13	94	0	53	32	16	12	38	1.86
3850023--3850244	79	2.8	79	87	2	322	28	27	13	30	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32